Cow genome map
| Conread name: | rspc031_h17.y1 |
| Conread position: | 2-174 |
| Cow position: | chr4:11617540-11617715 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 2-293 |
| Cow position: | chr4:47718490-47718196 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-384 |
| Cow position: | chr4:21338923-21338535 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 2-384 |
| Cow position: | chr4:28830111-28830484 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 94 |
| Conread position: | 3-381 |
| Cow position: | chr4:46663263-46663646 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 68 |
| Conread position: | 3-384 |
| Cow position: | chr4:1931561-1931175 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 3-384 |
| Cow position: | chr4:3960658-3961040 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 3-384 |
| Cow position: | chr4:41330502-41330885 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 3-384 |
| Cow position: | chr4:57978487-57978862 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 26, 124 |
| Conread position: | 5-374 |
| Cow position: | chr4:51044813-51044447 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 144, 14 |
| Conread position: | 5-384 |
| Cow position: | chr4:15193086-15193461 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 6-342 |
| Cow position: | chr4:21358737-21359065 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 11, 122 |
| Conread position: | 7-384 |
| Cow position: | chr4:16358973-16359337 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 8-382 |
| Cow position: | chr4:34185783-34185407 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 17-371 |
| Cow position: | chr4:1371904-1371560 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 58 |
| Conread position: | 17-375 |
| Cow position: | chr4:60631155-60630802 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 17-375 |
| Cow position: | chr4:60672988-60673351 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 77 |
| Conread position: | 17-384 |
| Cow position: | chr4:40825170-40824800 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 17-384 |
| Cow position: | chr4:66925096-66925450 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 19-384 |
| Cow position: | chr4:54955039-54955418 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 27-376 |
| Cow position: | chr4:4905245-4905590 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-381 |
| Cow position: | chr4:18515979-18516338 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 27-381 |
| Cow position: | chr4:43880201-43880552 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-383 |
| Cow position: | chr4:355006-355359 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr4:24446106-24445754 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 27-384 |
| Cow position: | chr4:25600510-25600155 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr4:33074290-33073939 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 27-384 |
| Cow position: | chr4:36895464-36895819 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr4:41118217-41118572 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr4:43320546-43320191 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 27-384 |
| Cow position: | chr4:45050205-45049850 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr4:46713242-46712896 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 28-235 |
| Cow position: | chr4:17927451-17927253 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 37-384 |
| Cow position: | chr4:3357831-3358170 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 86 |
| Conread position: | 38-384 |
| Cow position: | chr4:6491242-6490901 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 38-384 |
| Cow position: | chr4:48025509-48025847 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 85 |
| Conread position: | 43-235 |
| Cow position: | chr4:4168594-4168785 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 50-381 |
| Cow position: | chr4:1050508-1050178 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 50-381 |
| Cow position: | chr4:10407876-10408182 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 292, 66 |
| Conread position: | 50-384 |
| Cow position: | chr4:29532599-29532269 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 73 |
| Conread position: | 53-384 |
| Cow position: | chr4:13491691-13492021 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 70 |
| Conread position: | 53-384 |
| Cow position: | chr4:33492929-33493256 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 70 |
| Conread position: | 53-384 |
| Cow position: | chr4:44724210-44724528 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 40 |
| Conread position: | 64-379 |
| Cow position: | chr4:31668461-31668757 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 278, 12 |
| Conread position: | 134-384 |
| Cow position: | chr4:11617628-11617883 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 154-384 |
| Cow position: | chr4:9311445-9311679 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 9, 134 |
| Conread position: | 154-384 |
| Cow position: | chr4:23114968-23114731 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 63 |
| Conread position: | 154-384 |
| Cow position: | chr4:65224327-65224089 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 161-342 |
| Cow position: | chr4:157745-157930 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 52 |
| Conread position: | 161-342 |
| Cow position: | chr4:528211-528395 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 129 |
| Conread position: | 161-365 |
| Cow position: | chr4:30308217-30308007 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 161-368 |
| Cow position: | chr4:32211346-32211560 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 67, 130 |
| Conread position: | 161-378 |
| Cow position: | chr4:5879402-5879624 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 161-381 |
| Cow position: | chr4:6269405-6269182 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 130 |
| Conread position: | 161-384 |
| Cow position: | chr4:101712-101484 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 161-384 |
| Cow position: | chr4:602213-602442 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 161-384 |
| Cow position: | chr4:3124997-3125226 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 161-384 |
| Cow position: | chr4:41954011-41954239 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 161-384 |
| Cow position: | chr4:47764954-47764728 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 64, 131 |
| Conread position: | 162-384 |
| Cow position: | chr4:16055811-16056039 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 129 |
| Conread position: | 170-382 |
| Cow position: | chr4:47718345-47718148 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 215-384 |
| Cow position: | chr4:12241944-12241775 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 70 |
| Conread position: | 224-382 |
| Cow position: | chr4:60265501-60265345 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 231-373 |
| Cow position: | chr4:54190168-54190308 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 17 |
| Conread position: | 248-384 |
| Cow position: | chr4:17926945-17926809 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 36 |
Show alignments to all cow chromosomes.