Cow genome map

Conread name: rspc031_h17.y1

Conread position: 2-238
Cow position: chr5:13607600-13607371 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 23, 117

Conread position: 2-324
Cow position: chr5:25207625-25207328 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 17, 9

Conread position: 2-383
Cow position: chr5:32734055-32733704 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 265
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 35, 10

Conread position: 2-384
Cow position: chr5:2913607-2913990 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 127

Conread position: 2-384
Cow position: chr5:3505080-3504707 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 76

Conread position: 2-384
Cow position: chr5:23716790-23716405 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 82

Conread position: 2-384
Cow position: chr5:41963771-41963392 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 124

Conread position: 2-384
Cow position: chr5:52804517-52804874 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 9

Conread position: 3-214
Cow position: chr5:45699193-45699406 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 42, 14

Conread position: 3-275
Cow position: chr5:49123670-49123396 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 126

Conread position: 3-374
Cow position: chr5:61274009-61273631 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 124

Conread position: 3-382
Cow position: chr5:46006267-46005893 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 17, 81

Conread position: 3-383
Cow position: chr5:1342637-1342257 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 125

Conread position: 3-384
Cow position: chr5:4384386-4384769 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 103

Conread position: 3-384
Cow position: chr5:10777117-10776713 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 275
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 231

Conread position: 3-384
Cow position: chr5:24097812-24098187 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 70

Conread position: 3-384
Cow position: chr5:32674577-32674188 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 3-384
Cow position: chr5:34695742-34696124 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 127

Conread position: 3-384
Cow position: chr5:47831966-47831554 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 276
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 18, 314

Conread position: 5-384
Cow position: chr5:41530411-41530030 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 114

Conread position: 6-374
Cow position: chr5:51162065-51162443 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 255
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 132

Conread position: 6-382
Cow position: chr5:27000368-27000739 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 113

Conread position: 7-384
Cow position: chr5:27910138-27909728 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 280
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 312

Conread position: 7-384
Cow position: chr5:32945047-32945420 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 120

Conread position: 9-329
Cow position: chr5:46658867-46659194 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 111

Conread position: 11-342
Cow position: chr5:29456795-29457119 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 25

Conread position: 11-378
Cow position: chr5:12682335-12681967 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 109

Conread position: 11-382
Cow position: chr5:55150101-55149758 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 263
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 8, 97

Conread position: 11-384
Cow position: chr5:10844738-10844335 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 279
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 304

Conread position: 11-384
Cow position: chr5:34202137-34202487 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 58

Conread position: 13-377
Cow position: chr5:24151245-24151607 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 256
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 5, 106

Conread position: 17-245
Cow position: chr5:39165594-39165376 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 100

Conread position: 17-292
Cow position: chr5:41551722-41551459 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 102

Conread position: 17-372
Cow position: chr5:29008561-29008889 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 252
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 27, 101

Conread position: 17-373
Cow position: chr5:28006405-28006759 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 108

Conread position: 17-380
Cow position: chr5:26768997-26769349 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 17-382
Cow position: chr5:58747065-58747429 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 251
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 100

Conread position: 17-384
Cow position: chr5:24329492-24329837 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 31, 44

Conread position: 17-384
Cow position: chr5:28030690-28031033 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 101

Conread position: 17-384
Cow position: chr5:49181482-49181826 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 95

Conread position: 17-384
Cow position: chr5:49594300-49593919 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 66

Conread position: 19-373
Cow position: chr5:27060894-27060547 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 14, 39

Conread position: 19-374
Cow position: chr5:46631222-46630884 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 23, 47

Conread position: 21-384
Cow position: chr5:48809530-48809174 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 21, 105

Conread position: 21-384
Cow position: chr5:54793435-54793078 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 54

Conread position: 27-235
Cow position: chr5:25916886-25917083 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 98

Conread position: 27-246
Cow position: chr5:14500962-14500751 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 23, 78

Conread position: 27-283
Cow position: chr5:12184428-12184682 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 98

Conread position: 27-329
Cow position: chr5:27652766-27652478 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 56

Conread position: 27-381
Cow position: chr5:7273056-7273403 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 66

Conread position: 27-382
Cow position: chr5:30578511-30578860 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 78

Conread position: 27-383
Cow position: chr5:416535-416180 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr5:2430946-2430592 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 78

Conread position: 27-384
Cow position: chr5:3785000-3785351 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 27-384
Cow position: chr5:4068179-4068530 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 66

Conread position: 27-384
Cow position: chr5:10917989-10918337 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr5:37731530-37731885 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr5:46739416-46739045 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 263
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr5:55627191-55627544 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 58

Conread position: 27-384
Cow position: chr5:59281947-59282302 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr5:64782828-64782477 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 57

Conread position: 28-384
Cow position: chr5:49120091-49119738 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 98

Conread position: 38-381
Cow position: chr5:6158994-6158657 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 196, 78

Conread position: 38-382
Cow position: chr5:23688281-23687933 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 78

Conread position: 38-383
Cow position: chr5:56858504-56858164 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 230
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 190, 46

Conread position: 38-384
Cow position: chr5:57483343-57483007 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 113

Conread position: 38-384
Cow position: chr5:76124348-76124011 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 85, 28

Conread position: 86-381
Cow position: chr5:46643951-46644246 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 37, 11

Conread position: 106-382
Cow position: chr5:6519161-6519435 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 17

Conread position: 154-308
Cow position: chr5:21456580-21456419 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 127

Conread position: 154-342
Cow position: chr5:4088173-4088366 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 133

Conread position: 154-381
Cow position: chr5:37755837-37755602 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 135

Conread position: 154-384
Cow position: chr5:24576216-24576452 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 134

Conread position: 154-384
Cow position: chr5:26079916-26079679 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 115

Conread position: 154-384
Cow position: chr5:48468970-48468735 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 132

Conread position: 158-347
Cow position: chr5:54936203-54936006 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 12, 137

Conread position: 161-378
Cow position: chr5:3963790-3964011 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 128

Conread position: 161-378
Cow position: chr5:14379479-14379703 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 70, 131

Conread position: 161-378
Cow position: chr5:45182781-45182561 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 70, 128

Conread position: 161-378
Cow position: chr5:46775403-46775626 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 73, 131

Conread position: 161-378
Cow position: chr5:59059929-59060152 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 60, 131

Conread position: 161-381
Cow position: chr5:2530587-2530811 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 112

Conread position: 161-381
Cow position: chr5:46663316-46663542 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 130

Conread position: 161-382
Cow position: chr5:10443891-10443663 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 132

Conread position: 161-382
Cow position: chr5:23960797-23960571 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 131

Conread position: 161-382
Cow position: chr5:58195313-58195539 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 131

Conread position: 161-384
Cow position: chr5:4019887-4019659 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 117

Conread position: 161-384
Cow position: chr5:18663558-18663787 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 130

Conread position: 161-384
Cow position: chr5:31705888-31706114 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 70, 126

Conread position: 161-384
Cow position: chr5:32771793-32772021 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 66, 121

Conread position: 161-384
Cow position: chr5:53714567-53714796 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 70, 131

Conread position: 184-384
Cow position: chr5:73489992-73489786 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 56, 107

Conread position: 186-384
Cow position: chr5:29437620-29437418 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 101

Conread position: 239-384
Cow position: chr5:39165403-39165258 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 103, 46

Conread position: 252-384
Cow position: chr5:45699689-45699820 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 30

Show alignments to all cow chromosomes.