Cow genome map

Conread name: rspc031_h17.y1

Conread position: 2-245
Cow position: chr6:13275888-13276123 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 9

Conread position: 2-375
Cow position: chr6:10559312-10558968 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 266
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 10

Conread position: 2-384
Cow position: chr6:11278392-11278014 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 115

Conread position: 2-384
Cow position: chr6:12093554-12093173 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 88

Conread position: 3-237
Cow position: chr6:47958386-47958615 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 39, 16

Conread position: 3-377
Cow position: chr6:28062621-28063023 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 107

Conread position: 3-378
Cow position: chr6:39907426-39907832 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 276
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 313

Conread position: 3-379
Cow position: chr6:40314185-40314585 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 47, 52

Conread position: 3-381
Cow position: chr6:3489093-3488713 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 126

Conread position: 3-381
Cow position: chr6:38231568-38231958 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 128

Conread position: 3-381
Cow position: chr6:65822827-65822454 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 249
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 122

Conread position: 3-382
Cow position: chr6:68026052-68026461 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 279
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 121

Conread position: 3-383
Cow position: chr6:912930-913313 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 126

Conread position: 3-384
Cow position: chr6:2553980-2554389 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 272
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 310

Conread position: 3-384
Cow position: chr6:6477146-6476770 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 33

Conread position: 3-384
Cow position: chr6:15141866-15141493 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 22

Conread position: 3-384
Cow position: chr6:36525345-36525724 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 3-384
Cow position: chr6:47044135-47043750 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 136

Conread position: 3-384
Cow position: chr6:50498150-50497771 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 106

Conread position: 3-384
Cow position: chr6:65880159-65880548 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 57

Conread position: 7-191
Cow position: chr6:65926987-65927174 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 74

Conread position: 7-384
Cow position: chr6:3278646-3278269 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 121

Conread position: 10-384
Cow position: chr6:2111641-2111275 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 15

Conread position: 11-382
Cow position: chr6:66231129-66231495 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 114

Conread position: 16-384
Cow position: chr6:65900599-65900228 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 108

Conread position: 17-382
Cow position: chr6:42926720-42927060 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 250
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 101

Conread position: 17-384
Cow position: chr6:19453259-19453610 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 19-383
Cow position: chr6:7180340-7179984 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 246
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 23, 106

Conread position: 20-382
Cow position: chr6:10053961-10054293 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 19, 97

Conread position: 20-384
Cow position: chr6:20561780-20561427 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 105

Conread position: 22-305
Cow position: chr6:4904728-4904449 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 18, 61

Conread position: 27-220
Cow position: chr6:29310694-29310880 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 125

Conread position: 27-297
Cow position: chr6:62829570-62829305 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 23, 53

Conread position: 27-381
Cow position: chr6:30275843-30275504 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 251
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 23, 98

Conread position: 27-381
Cow position: chr6:39436965-39437322 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 89

Conread position: 27-383
Cow position: chr6:1823912-1823565 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr6:52185-51835 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr6:5951908-5951555 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr6:15281216-15280861 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 98

Conread position: 27-384
Cow position: chr6:21686229-21686577 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 79

Conread position: 27-384
Cow position: chr6:24238378-24238729 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr6:27468598-27468940 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 8

Conread position: 27-384
Cow position: chr6:27530668-27530317 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr6:28274319-28274670 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 98

Conread position: 27-384
Cow position: chr6:34893680-34893328 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 98

Conread position: 27-384
Cow position: chr6:55545000-55544645 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 78

Conread position: 27-384
Cow position: chr6:65840915-65841271 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 23, 125

Conread position: 28-223
Cow position: chr6:17045294-17045477 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 29-384
Cow position: chr6:8201061-8201414 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 96

Conread position: 30-372
Cow position: chr6:62489384-62489043 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 226
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 119, 11

Conread position: 37-381
Cow position: chr6:3890150-3889808 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 88

Conread position: 38-272
Cow position: chr6:2401607-2401833 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 112, 78

Conread position: 38-384
Cow position: chr6:21971017-21971355 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 86

Conread position: 38-384
Cow position: chr6:30478425-30478781 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 87

Conread position: 44-373
Cow position: chr6:37477579-37477912 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 73

Conread position: 50-271
Cow position: chr6:8762099-8761885 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 186, 73

Conread position: 50-381
Cow position: chr6:40555258-40554932 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 73

Conread position: 50-384
Cow position: chr6:35877364-35877035 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 100, 73

Conread position: 50-384
Cow position: chr6:43795368-43795027 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 231
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 100, 42

Conread position: 50-384
Cow position: chr6:64712906-64713230 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 186, 70

Conread position: 50-384
Cow position: chr6:64714473-64714797 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 186, 70

Conread position: 58-384
Cow position: chr6:13318325-13318005 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 59

Conread position: 59-332
Cow position: chr6:476457-476723 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 181, 65

Conread position: 102-375
Cow position: chr6:52735799-52736074 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 22

Conread position: 118-383
Cow position: chr6:21836700-21836421 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 67, 29

Conread position: 151-383
Cow position: chr6:13276010-13276240 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 41

Conread position: 154-380
Cow position: chr6:45671713-45671947 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 135

Conread position: 154-384
Cow position: chr6:6935681-6935443 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 9, 135

Conread position: 154-384
Cow position: chr6:41757540-41757304 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 125

Conread position: 158-384
Cow position: chr6:34126799-34127033 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 139

Conread position: 158-384
Cow position: chr6:40274706-40274940 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 136

Conread position: 161-308
Cow position: chr6:33794870-33794718 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 76, 118

Conread position: 161-370
Cow position: chr6:734629-734835 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 179, 74

Conread position: 161-378
Cow position: chr6:332026-331797 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 70, 197

Conread position: 161-380
Cow position: chr6:2374163-2374389 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 131

Conread position: 161-380
Cow position: chr6:17598828-17598604 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 70, 18

Conread position: 161-381
Cow position: chr6:1405774-1405554 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 68, 77

Conread position: 161-383
Cow position: chr6:7142012-7141789 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 101

Conread position: 161-383
Cow position: chr6:26671412-26671178 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 137

Conread position: 161-384
Cow position: chr6:13103512-13103740 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position: chr6:27169029-27169258 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 70, 126

Conread position: 161-384
Cow position: chr6:28492058-28491832 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 35

Conread position: 161-384
Cow position: chr6:43617168-43617395 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position: chr6:57870551-57870322 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 60, 130

Conread position: 169-384
Cow position: chr6:10640263-10640472 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 84, 7

Conread position: 169-384
Cow position: chr6:44028518-44028732 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 120

Conread position: 182-384
Cow position: chr6:65908907-65909115 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 109

Conread position: 184-381
Cow position: chr6:68362818-68362636 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 158, 54

Conread position: 187-384
Cow position: chr6:42723435-42723238 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 34

Conread position: 203-370
Cow position: chr6:2885741-2885915 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 27, 17

Conread position: 206-384
Cow position: chr6:6566110-6566294 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 25, 81

Conread position: 214-383
Cow position: chr6:28106255-28106084 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 23, 73

Conread position: 215-381
Cow position: chr6:17045570-17045743 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 76

Conread position: 215-384
Cow position: chr6:29311001-29311177 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 25, 77

Conread position: 221-378
Cow position: chr6:33388337-33388499 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 65

Conread position: 232-384
Cow position: chr6:701481-701635 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 55

Show alignments to all cow chromosomes.