Cow genome map

Conread name: rspc031_h17.y1

Conread position: 1-262
Cow position:
Alignm length: 269
Alignm identity: 196
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 18, 116

Conread position: 1-384
Cow position:
Alignm length: 392
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 125

Conread position: 2-331
Cow position:
Alignm length: 338
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 117

Conread position: 2-380
Cow position:
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 56

Conread position: 2-382
Cow position:
Alignm length: 396
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 9

Conread position: 2-384
Cow position:
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 2-384
Cow position:
Alignm length: 388
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 9

Conread position: 2-384
Cow position:
Alignm length: 385
Alignm identity: 269
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 8, 16

Conread position: 2-384
Cow position:
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 10

Conread position: 2-384
Cow position:
Alignm length: 400
Alignm identity: 277
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 17, 196

Conread position: 2-384
Cow position:
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 11

Conread position: 2-384
Cow position:
Alignm length: 401
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 67

Conread position: 2-384
Cow position:
Alignm length: 390
Alignm identity: 277
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 17, 8

Conread position: 3-367
Cow position:
Alignm length: 375
Alignm identity: 250
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 21, 124

Conread position: 3-374
Cow position:
Alignm length: 404
Alignm identity: 274
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 100

Conread position: 3-378
Cow position:
Alignm length: 411
Alignm identity: 271
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 314

Conread position: 3-381
Cow position:
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 105

Conread position: 3-381
Cow position:
Alignm length: 406
Alignm identity: 263
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 118

Conread position: 3-383
Cow position:
Alignm length: 384
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 22

Conread position: 3-384
Cow position:
Alignm length: 389
Alignm identity: 253
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 123

Conread position: 3-384
Cow position:
Alignm length: 395
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 123

Conread position: 3-384
Cow position:
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 126

Conread position: 3-384
Cow position:
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 289

Conread position: 4-381
Cow position:
Alignm length: 396
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 127

Conread position: 4-384
Cow position:
Alignm length: 385
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 122

Conread position: 5-381
Cow position:
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 23

Conread position: 6-282
Cow position:
Alignm length: 285
Alignm identity: 214
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 16, 91

Conread position: 6-368
Cow position:
Alignm length: 373
Alignm identity: 240
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 71

Conread position: 6-381
Cow position:
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 11

Conread position: 6-383
Cow position:
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 132

Conread position: 6-384
Cow position:
Alignm length: 388
Alignm identity: 257
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 12, 70

Conread position: 7-380
Cow position:
Alignm length: 409
Alignm identity: 274
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 226

Conread position: 7-384
Cow position:
Alignm length: 391
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 10

Conread position: 10-380
Cow position:
Alignm length: 383
Alignm identity: 265
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 9, 62

Conread position: 17-240
Cow position:
Alignm length: 226
Alignm identity: 166
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 27, 101

Conread position: 17-377
Cow position:
Alignm length: 369
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 108

Conread position: 19-312
Cow position:
Alignm length: 301
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 64

Conread position: 19-378
Cow position:
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 29

Conread position: 19-378
Cow position:
Alignm length: 364
Alignm identity: 255
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 47

Conread position: 19-384
Cow position:
Alignm length: 376
Alignm identity: 266
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 24, 45

Conread position: 21-384
Cow position:
Alignm length: 373
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 106

Conread position: 21-384
Cow position:
Alignm length: 374
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 78

Conread position: 27-268
Cow position:
Alignm length: 250
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 8

Conread position: 27-328
Cow position:
Alignm length: 310
Alignm identity: 218
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 23, 53

Conread position: 27-332
Cow position:
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 99

Conread position: 27-342
Cow position:
Alignm length: 324
Alignm identity: 235
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 20, 98

Conread position: 27-342
Cow position:
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-376
Cow position:
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 98

Conread position: 27-381
Cow position:
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-383
Cow position:
Alignm length: 362
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 99

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 66

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 257
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 98

Conread position: 27-384
Cow position:
Alignm length: 363
Alignm identity: 257
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 23, 63

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 77

Conread position: 27-384
Cow position:
Alignm length: 365
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 365
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 48

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 71

Conread position: 27-384
Cow position:
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 28

Conread position: 27-384
Cow position:
Alignm length: 363
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 28-384
Cow position:
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 97

Conread position: 33-384
Cow position:
Alignm length: 359
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 90

Conread position: 38-375
Cow position:
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 79

Conread position: 41-283
Cow position:
Alignm length: 249
Alignm identity: 182
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 109, 44

Conread position: 41-384
Cow position:
Alignm length: 350
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 76

Conread position: 41-384
Cow position:
Alignm length: 348
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 40

Conread position: 43-262
Cow position:
Alignm length: 227
Alignm identity: 164
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 41, 75

Conread position: 50-380
Cow position:
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 100

Conread position: 50-381
Cow position:
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 73

Conread position: 50-384
Cow position:
Alignm length: 353
Alignm identity: 247
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 100, 73

Conread position: 50-384
Cow position:
Alignm length: 352
Alignm identity: 249
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 102, 57

Conread position: 53-383
Cow position:
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 76

Conread position: 60-384
Cow position:
Alignm length: 331
Alignm identity: 222
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 90, 63

Conread position: 78-384
Cow position:
Alignm length: 315
Alignm identity: 226
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 162, 45

Conread position: 118-382
Cow position:
Alignm length: 275
Alignm identity: 193
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 113, 29

Conread position: 119-384
Cow position:
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 112, 28

Conread position: 154-372
Cow position:
Alignm length: 228
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 135

Conread position: 161-342
Cow position:
Alignm length: 188
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 130

Conread position: 161-377
Cow position:
Alignm length: 225
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 131

Conread position: 161-378
Cow position:
Alignm length: 225
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 76, 130

Conread position: 161-378
Cow position:
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 126

Conread position: 161-380
Cow position:
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 66, 130

Conread position: 161-381
Cow position:
Alignm length: 229
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 129

Conread position: 161-382
Cow position:
Alignm length: 230
Alignm identity: 165
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 70, 132

Conread position: 161-382
Cow position:
Alignm length: 230
Alignm identity: 160
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 60, 129

Conread position: 161-382
Cow position:
Alignm length: 230
Alignm identity: 161
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 131

Conread position: 161-383
Cow position:
Alignm length: 231
Alignm identity: 170
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 63, 129

Conread position: 161-384
Cow position:
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 66, 129

Conread position: 161-384
Cow position:
Alignm length: 231
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 70, 130

Conread position: 180-377
Cow position:
Alignm length: 202
Alignm identity: 148
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 10, 14

Conread position: 186-384
Cow position:
Alignm length: 206
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 51, 105

Conread position: 236-383
Cow position:
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 107, 49

Conread position: 258-383
Cow position:
Alignm length: 127
Alignm identity: 100
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 84, 27

Show alignments to all cow chromosomes.