Cow genome map

Conread name: rspc031_h17.y1

Conread position: 1-375
Cow position: chr9:6756805-6757172 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 257
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 18

Conread position: 2-262
Cow position: chr9:3155307-3155554 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 17, 9

Conread position: 2-381
Cow position: chr9:37130285-37129927 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 260
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 10

Conread position: 2-384
Cow position: chr9:31020039-31020417 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 17, 247

Conread position: 2-384
Cow position: chr9:59456366-59455988 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 116

Conread position: 2-384
Cow position: chr9:59483433-59483058 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 124

Conread position: 3-239
Cow position: chr9:4531423-4531655 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 126

Conread position: 3-247
Cow position: chr9:6249378-6249617 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 106

Conread position: 3-283
Cow position: chr9:59443059-59443344 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 55

Conread position: 3-384
Cow position: chr9:9012338-9012720 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 78

Conread position: 3-384
Cow position: chr9:10321054-10321433 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 128

Conread position: 3-384
Cow position: chr9:12401452-12401855 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 265
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 96

Conread position: 3-384
Cow position: chr9:16174997-16175379 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 3-384
Cow position: chr9:18510494-18510113 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 3-384
Cow position: chr9:37971981-37971596 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 127

Conread position: 3-384
Cow position: chr9:45872553-45872965 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 272
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 314

Conread position: 6-384
Cow position: chr9:832209-831820 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 170

Conread position: 10-316
Cow position: chr9:3802754-3803060 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 10, 74

Conread position: 10-373
Cow position: chr9:64118108-64118444 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 31, 14

Conread position: 10-384
Cow position: chr9:5003249-5003624 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 266
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 118

Conread position: 12-380
Cow position: chr9:4984021-4984387 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 250
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 75

Conread position: 17-220
Cow position: chr9:10314649-10314855 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 27, 101

Conread position: 17-383
Cow position: chr9:28626757-28626418 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 17-384
Cow position: chr9:8969788-8969432 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 17-384
Cow position: chr9:15071780-15072126 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 263
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 27, 95

Conread position: 17-384
Cow position: chr9:54359852-54360218 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 19-262
Cow position: chr9:13219612-13219857 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 100

Conread position: 19-277
Cow position: chr9:34107607-34107348 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 106

Conread position: 19-369
Cow position: chr9:20310468-20310119 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 93

Conread position: 25-384
Cow position: chr9:2170312-2170669 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 27-287
Cow position: chr9:22650180-22650438 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 98

Conread position: 27-375
Cow position: chr9:7001811-7002156 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 99

Conread position: 27-376
Cow position: chr9:6831285-6830941 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 96

Conread position: 27-378
Cow position: chr9:2488735-2488359 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 259
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 24, 98

Conread position: 27-381
Cow position: chr9:28020803-28021155 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 92

Conread position: 27-384
Cow position: chr9:418271-417920 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 28, 98

Conread position: 27-384
Cow position: chr9:6051781-6051429 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 251
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr9:10855455-10855811 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr9:29629491-29629136 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr9:30671627-30671981 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 99

Conread position: 27-384
Cow position: chr9:31806795-31807151 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 122

Conread position: 27-384
Cow position: chr9:37163549-37163197 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 68

Conread position: 27-384
Cow position: chr9:42308938-42309294 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr9:42568129-42568484 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr9:47001469-47001817 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr9:51183452-51183097 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 38-234
Cow position: chr9:7062871-7062686 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 38-378
Cow position: chr9:52289899-52290243 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 236
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 112, 79

Conread position: 38-384
Cow position: chr9:793203-792896 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 304, 43

Conread position: 38-384
Cow position: chr9:59174888-59174546 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 250
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 8, 16

Conread position: 41-384
Cow position: chr9:27033981-27034319 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 109

Conread position: 43-383
Cow position: chr9:651805-651483 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 17, 115

Conread position: 43-384
Cow position: chr9:34990942-34991260 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 250
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 57, 49

Conread position: 50-384
Cow position: chr9:1996627-1996309 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 185, 41

Conread position: 50-384
Cow position: chr9:2199397-2199722 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 174, 74

Conread position: 50-384
Cow position: chr9:3548889-3548559 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 73

Conread position: 50-384
Cow position: chr9:59535386-59535710 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 74

Conread position: 96-384
Cow position: chr9:164176-163879 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 194

Conread position: 151-384
Cow position: chr9:2500927-2500684 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 6, 142

Conread position: 154-384
Cow position: chr9:16267734-16267971 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 135

Conread position: 158-380
Cow position: chr9:50788947-50789178 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 136

Conread position: 161-329
Cow position: chr9:17065004-17064832 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 97

Conread position: 161-342
Cow position: chr9:3006890-3006704 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 76, 130

Conread position: 161-384
Cow position: chr9:781417-781190 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 124

Conread position: 161-384
Cow position: chr9:4671991-4672218 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 67, 129

Conread position: 161-384
Cow position: chr9:25483254-25483480 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 126

Conread position: 161-384
Cow position: chr9:25755824-25755592 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 74, 134

Conread position: 161-384
Cow position: chr9:27933476-27933705 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position: chr9:31194785-31194556 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position: chr9:33834889-33834662 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 67, 128

Conread position: 161-384
Cow position: chr9:34243216-34242987 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position: chr9:46626415-46626188 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 128

Conread position: 169-384
Cow position: chr9:1076807-1076588 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 122

Conread position: 193-382
Cow position: chr9:10314800-10314989 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 11

Conread position: 204-373
Cow position: chr9:2051885-2052056 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 87

Conread position: 215-384
Cow position: chr9:4531930-4532102 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 76

Conread position: 215-384
Cow position: chr9:60278587-60278411 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 22, 78

Conread position: 236-383
Cow position: chr9:59443318-59443465 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 106, 49

Conread position: 252-384
Cow position: chr9:7062627-7062495 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 90, 33

Show alignments to all cow chromosomes.