Cow genome map

Conread name: rspc031_h17.y1

Conread position: 1-384
Cow position:
Alignm length: 414
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 119

Conread position: 1-384
Cow position:
Alignm length: 390
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 11

Conread position: 2-174
Cow position:
Alignm length: 180
Alignm identity: 133
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 17, 9

Conread position: 2-241
Cow position:
Alignm length: 246
Alignm identity: 187
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 17, 116

Conread position: 2-372
Cow position:
Alignm length: 382
Alignm identity: 259
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 41, 22

Conread position: 2-378
Cow position:
Alignm length: 389
Alignm identity: 261
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 118

Conread position: 2-381
Cow position:
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 10

Conread position: 2-384
Cow position:
Alignm length: 417
Alignm identity: 273
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 316

Conread position: 2-384
Cow position:
Alignm length: 394
Alignm identity: 259
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 31, 6

Conread position: 2-384
Cow position:
Alignm length: 388
Alignm identity: 268
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 10

Conread position: 2-384
Cow position:
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 10

Conread position: 3-186
Cow position:
Alignm length: 189
Alignm identity: 133
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 116

Conread position: 3-239
Cow position:
Alignm length: 238
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 33

Conread position: 3-339
Cow position:
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 106

Conread position: 3-372
Cow position:
Alignm length: 402
Alignm identity: 264
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 81

Conread position: 3-381
Cow position:
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 126

Conread position: 3-381
Cow position:
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 125

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 125

Conread position: 3-382
Cow position:
Alignm length: 415
Alignm identity: 277
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 315

Conread position: 3-382
Cow position:
Alignm length: 412
Alignm identity: 277
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 313

Conread position: 3-382
Cow position:
Alignm length: 393
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 59

Conread position: 3-382
Cow position:
Alignm length: 400
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 3-382
Cow position:
Alignm length: 414
Alignm identity: 274
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 316

Conread position: 3-382
Cow position:
Alignm length: 415
Alignm identity: 277
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 296

Conread position: 3-383
Cow position:
Alignm length: 413
Alignm identity: 281
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 17, 97

Conread position: 3-384
Cow position:
Alignm length: 393
Alignm identity: 255
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 22, 123

Conread position: 3-384
Cow position:
Alignm length: 394
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 56

Conread position: 3-384
Cow position:
Alignm length: 413
Alignm identity: 278
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 15, 302

Conread position: 3-384
Cow position:
Alignm length: 391
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 3-384
Cow position:
Alignm length: 392
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 124

Conread position: 3-384
Cow position:
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 126

Conread position: 5-383
Cow position:
Alignm length: 383
Alignm identity: 257
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 64

Conread position: 5-384
Cow position:
Alignm length: 408
Alignm identity: 271
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 16, 47

Conread position: 6-384
Cow position:
Alignm length: 385
Alignm identity: 259
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 36, 120

Conread position: 7-369
Cow position:
Alignm length: 400
Alignm identity: 269
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 15, 102

Conread position: 7-375
Cow position:
Alignm length: 379
Alignm identity: 241
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 11

Conread position: 7-382
Cow position:
Alignm length: 397
Alignm identity: 266
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 14, 297

Conread position: 12-380
Cow position:
Alignm length: 375
Alignm identity: 256
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 13, 107

Conread position: 12-384
Cow position:
Alignm length: 401
Alignm identity: 272
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 9, 90

Conread position: 12-384
Cow position:
Alignm length: 381
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 64

Conread position: 17-214
Cow position:
Alignm length: 203
Alignm identity: 160
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 102

Conread position: 17-237
Cow position:
Alignm length: 223
Alignm identity: 170
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 27, 7

Conread position: 17-342
Cow position:
Alignm length: 330
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 23

Conread position: 17-381
Cow position:
Alignm length: 372
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 228

Conread position: 17-384
Cow position:
Alignm length: 392
Alignm identity: 272
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 25, 58

Conread position: 18-384
Cow position:
Alignm length: 375
Alignm identity: 240
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 24, 76

Conread position: 19-180
Cow position:
Alignm length: 167
Alignm identity: 138
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 100

Conread position: 19-276
Cow position:
Alignm length: 265
Alignm identity: 182
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 70

Conread position: 19-283
Cow position:
Alignm length: 270
Alignm identity: 190
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 128, 19

Conread position: 19-377
Cow position:
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 100

Conread position: 19-379
Cow position:
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 99

Conread position: 19-384
Cow position:
Alignm length: 373
Alignm identity: 253
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 15, 56

Conread position: 19-384
Cow position:
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 99

Conread position: 20-381
Cow position:
Alignm length: 372
Alignm identity: 260
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 26, 70

Conread position: 27-276
Cow position:
Alignm length: 258
Alignm identity: 176
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 53

Conread position: 27-372
Cow position:
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 62

Conread position: 27-375
Cow position:
Alignm length: 358
Alignm identity: 251
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 23, 95

Conread position: 27-376
Cow position:
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 97

Conread position: 27-380
Cow position:
Alignm length: 363
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 72

Conread position: 27-381
Cow position:
Alignm length: 364
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-381
Cow position:
Alignm length: 358
Alignm identity: 247
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 23, 98

Conread position: 27-381
Cow position:
Alignm length: 358
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 98

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 66

Conread position: 27-384
Cow position:
Alignm length: 368
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 126

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 90

Conread position: 27-384
Cow position:
Alignm length: 368
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 79

Conread position: 30-384
Cow position:
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 8

Conread position: 38-236
Cow position:
Alignm length: 202
Alignm identity: 151
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 112, 40

Conread position: 38-245
Cow position:
Alignm length: 213
Alignm identity: 155
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 113, 78

Conread position: 38-384
Cow position:
Alignm length: 362
Alignm identity: 246
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 111, 85

Conread position: 38-384
Cow position:
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 85

Conread position: 38-384
Cow position:
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 15

Conread position: 43-320
Cow position:
Alignm length: 282
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 73

Conread position: 43-377
Cow position:
Alignm length: 340
Alignm identity: 228
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 55

Conread position: 43-383
Cow position:
Alignm length: 345
Alignm identity: 243
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 107, 73

Conread position: 43-384
Cow position:
Alignm length: 346
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 73

Conread position: 49-243
Cow position:
Alignm length: 202
Alignm identity: 157
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 21, 69

Conread position: 50-384
Cow position:
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 76

Conread position: 50-384
Cow position:
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 53

Conread position: 50-384
Cow position:
Alignm length: 351
Alignm identity: 245
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 102, 74

Conread position: 53-384
Cow position:
Alignm length: 337
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 10

Conread position: 60-378
Cow position:
Alignm length: 331
Alignm identity: 241
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 90, 36

Conread position: 66-384
Cow position:
Alignm length: 332
Alignm identity: 235
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 22, 12

Conread position: 76-384
Cow position:
Alignm length: 316
Alignm identity: 194
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 164, 74

Conread position: 81-384
Cow position:
Alignm length: 307
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 35

Conread position: 89-383
Cow position:
Alignm length: 302
Alignm identity: 203
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 61, 34

Conread position: 96-384
Cow position:
Alignm length: 292
Alignm identity: 217
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 20

Conread position: 107-383
Cow position:
Alignm length: 290
Alignm identity: 214
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 43, 16

Conread position: 118-378
Cow position:
Alignm length: 269
Alignm identity: 183
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 120, 29

Conread position: 118-381
Cow position:
Alignm length: 275
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 113, 29

Conread position: 118-382
Cow position:
Alignm length: 276
Alignm identity: 190
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 39, 29

Conread position: 118-384
Cow position:
Alignm length: 276
Alignm identity: 186
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 113, 29

Conread position: 119-376
Cow position:
Alignm length: 265
Alignm identity: 180
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 112, 28

Conread position: 119-378
Cow position:
Alignm length: 268
Alignm identity: 178
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 112, 28

Conread position: 119-384
Cow position:
Alignm length: 274
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 111, 23

Conread position: 154-384
Cow position:
Alignm length: 240
Alignm identity: 168
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 135

Conread position: 154-384
Cow position:
Alignm length: 242
Alignm identity: 171
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 26

Conread position: 154-384
Cow position:
Alignm length: 242
Alignm identity: 171
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 26

Conread position: 154-384
Cow position:
Alignm length: 239
Alignm identity: 168
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 12, 134

Conread position: 154-384
Cow position:
Alignm length: 241
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 135

Conread position: 158-376
Cow position:
Alignm length: 227
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 73, 133

Conread position: 158-383
Cow position:
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 131

Conread position: 159-377
Cow position:
Alignm length: 228
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 120

Conread position: 159-384
Cow position:
Alignm length: 235
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 72, 132

Conread position: 161-331
Cow position:
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 70, 130

Conread position: 161-372
Cow position:
Alignm length: 219
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 126

Conread position: 161-376
Cow position:
Alignm length: 227
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 135

Conread position: 161-376
Cow position:
Alignm length: 224
Alignm identity: 163
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 72, 131

Conread position: 161-380
Cow position:
Alignm length: 227
Alignm identity: 159
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 70, 130

Conread position: 161-380
Cow position:
Alignm length: 227
Alignm identity: 157
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 72, 131

Conread position: 161-381
Cow position:
Alignm length: 231
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 133

Conread position: 161-382
Cow position:
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 67, 126

Conread position: 161-382
Cow position:
Alignm length: 225
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 77

Conread position: 161-382
Cow position:
Alignm length: 230
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 70, 130

Conread position: 161-382
Cow position:
Alignm length: 228
Alignm identity: 164
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 69, 127

Conread position: 161-383
Cow position:
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 76, 126

Conread position: 161-384
Cow position:
Alignm length: 233
Alignm identity: 167
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 70, 131

Conread position: 161-384
Cow position:
Alignm length: 231
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 66, 128

Conread position: 161-384
Cow position:
Alignm length: 226
Alignm identity: 159
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 69, 115

Conread position: 161-384
Cow position:
Alignm length: 231
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 130

Conread position: 161-384
Cow position:
Alignm length: 231
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 130

Conread position: 161-384
Cow position:
Alignm length: 234
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 128

Conread position: 161-384
Cow position:
Alignm length: 233
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position:
Alignm length: 232
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 131

Conread position: 161-384
Cow position:
Alignm length: 233
Alignm identity: 166
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 70, 118

Conread position: 161-384
Cow position:
Alignm length: 232
Alignm identity: 169
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 60, 131

Conread position: 161-384
Cow position:
Alignm length: 230
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 129

Conread position: 161-384
Cow position:
Alignm length: 233
Alignm identity: 166
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 67, 196

Conread position: 161-384
Cow position:
Alignm length: 232
Alignm identity: 165
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 76, 130

Conread position: 161-384
Cow position:
Alignm length: 234
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 133

Conread position: 169-378
Cow position:
Alignm length: 218
Alignm identity: 157
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 62, 123

Conread position: 169-384
Cow position:
Alignm length: 225
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 62, 123

Conread position: 169-384
Cow position:
Alignm length: 221
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 59, 121

Conread position: 169-384
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 59, 122

Conread position: 180-384
Cow position:
Alignm length: 206
Alignm identity: 156
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 162, 61

Conread position: 184-384
Cow position:
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 105

Conread position: 195-384
Cow position:
Alignm length: 196
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 96

Conread position: 215-384
Cow position:
Alignm length: 171
Alignm identity: 132
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 129, 70

Conread position: 239-376
Cow position:
Alignm length: 139
Alignm identity: 104
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 103, 46

Conread position: 248-384
Cow position:
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 96, 18

Conread position: 252-384
Cow position:
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 90, 33

Conread position: 259-384
Cow position:
Alignm length: 127
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 82, 26

Show alignments to all cow chromosomes.