Cow genome map
| Conread name: | rspl04_e9.y1 |
| Conread position: | 1-475 |
| Cow position: | chr18:42790639-42791116 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 127 |
| Conread position: | 49-475 |
| Cow position: | chr18:1417641-1418070 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 68-448 |
| Cow position: | chr18:40086111-40085726 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 200-456 |
| Cow position: | chr18:44398476-44398222 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 201-467 |
| Cow position: | chr18:41198125-41198391 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 201-474 |
| Cow position: | chr18:42791178-42791451 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 201-475 |
| Cow position: | chr18:50271592-50271865 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 257, 14 |
| Conread position: | 203-475 |
| Cow position: | chr18:41197959-41198231 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 69 |
| Conread position: | 204-456 |
| Cow position: | chr18:44398138-44397886 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 206-447 |
| Cow position: | chr18:40324749-40324508 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 147, 140 |
| Conread position: | 207-449 |
| Cow position: | chr18:42675100-42674859 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 7 |
| Conread position: | 214-442 |
| Cow position: | chr18:42675010-42674782 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 214-447 |
| Cow position: | chr18:41948869-41948636 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 214-447 |
| Cow position: | chr18:43168019-43168252 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 214-448 |
| Cow position: | chr18:42744154-42743920 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 88, 69 |
| Conread position: | 214-448 |
| Cow position: | chr18:42985165-42984931 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 214-448 |
| Cow position: | chr18:43175045-43174811 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 214-448 |
| Cow position: | chr18:44397960-44397726 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 214-453 |
| Cow position: | chr18:43119844-43119605 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 214-456 |
| Cow position: | chr18:52447755-52447997 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 214-469 |
| Cow position: | chr18:41949289-41949034 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 215-447 |
| Cow position: | chr18:41198391-41198623 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 159, 144 |
| Conread position: | 215-447 |
| Cow position: | chr18:43093274-43093042 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 215-451 |
| Cow position: | chr18:42985332-42985096 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 215-469 |
| Cow position: | chr18:43168188-43168442 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 80 |
| Conread position: | 216-447 |
| Cow position: | chr18:50083930-50084162 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 91 |
| Conread position: | 216-448 |
| Cow position: | chr18:44184573-44184341 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 216-448 |
| Cow position: | chr18:44397874-44397642 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 216-474 |
| Cow position: | chr18:43093609-43093351 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 217-447 |
| Cow position: | chr18:41198477-41198707 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 217-456 |
| Cow position: | chr18:50848733-50848972 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-475 |
| Cow position: | chr18:41197805-41198063 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-457 |
| Cow position: | chr18:50083681-50083920 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 218-475 |
| Cow position: | chr18:42827635-42827892 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 58 |
| Conread position: | 219-447 |
| Cow position: | chr18:42792540-42792768 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 219-447 |
| Cow position: | chr18:43093522-43093294 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 219-448 |
| Cow position: | chr18:41949200-41948971 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 219-448 |
| Cow position: | chr18:44398291-44398062 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 220-438 |
| Cow position: | chr18:51812231-51812013 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 220-448 |
| Cow position: | chr18:43022838-43022610 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 220-469 |
| Cow position: | chr18:42792037-42792286 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 220-475 |
| Cow position: | chr18:41197556-41197811 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 220-475 |
| Cow position: | chr18:42791617-42791872 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 220-475 |
| Cow position: | chr18:42792121-42792376 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 220-475 |
| Cow position: | chr18:43174955-43174700 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 220-475 |
| Cow position: | chr18:50848484-50848739 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-448 |
| Cow position: | chr18:42792290-42792517 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 221-469 |
| Cow position: | chr18:50271779-50272027 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 221-475 |
| Cow position: | chr18:42744231-42743977 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-475 |
| Cow position: | chr18:42791876-42792124 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 232-441 |
| Cow position: | chr18:33064274-33064064 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 236-468 |
| Cow position: | chr18:41198076-41198308 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-475 |
| Cow position: | chr18:43093337-43093098 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 236-475 |
| Cow position: | chr18:50059290-50059051 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-449 |
| Cow position: | chr18:49032877-49032668 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-474 |
| Cow position: | chr18:1418003-1418237 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 241-447 |
| Cow position: | chr18:42744715-42744509 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 241-475 |
| Cow position: | chr18:43093992-43093758 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 242-469 |
| Cow position: | chr18:41949345-41949118 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 259-441 |
| Cow position: | chr18:1418274-1418456 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-447 |
| Cow position: | chr18:50246601-50246789 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 259-448 |
| Cow position: | chr18:43175588-43175399 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-474 |
| Cow position: | chr18:41197679-41197894 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 259-475 |
| Cow position: | chr18:42827508-42827724 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 261-467 |
| Cow position: | chr18:50848441-50848647 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 40 |
| Conread position: | 264-447 |
| Cow position: | chr18:44398330-44398147 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 265-448 |
| Cow position: | chr18:40324186-40324003 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-475 |
| Cow position: | chr18:43167987-43168196 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-474 |
| Cow position: | chr18:1418235-1418405 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 305-475 |
| Cow position: | chr18:42791870-42792040 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.