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Cow genome map

           
Conread name:
           
rspl22_e17.y1
        

               
Conread position:
               
1-134
               

               
Cow position:
               
chr28:25334054-25333927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr28:5767724-5767879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr28:14891778-14891940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr28:8381872-8382074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:2122496-2122712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr28:22040583-22040357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr28:34083720-34083496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr28:12952034-12952303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
238, 100
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr28:12407388-12407078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr28:12936586-12936247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 85
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr28:5569196-5569552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 66
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr28:1165060-1164702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr28:25761722-25762073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 99
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr28:1215005-1214552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr28:15033253-15032797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr28:7829332-7829799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr28:12154667-12155164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr28:30305183-30304670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr28:1812134-1811632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr28:2088398-2088922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr28:785491-786021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr28:4045045-4045552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 85
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr28:12217464-12216937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr28:15604436-15605001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr28:13880348-13880925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 100
               

               
Conread position:
               
1-561
               

               
Cow position:
               
chr28:20967844-20967280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-564
               

               
Cow position:
               
chr28:1507701-1508264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-564
               

               
Cow position:
               
chr28:3189206-3188625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-564
               

               
Cow position:
               
chr28:17600157-17599593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
1-564
               

               
Cow position:
               
chr28:22230504-22229941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 78
               

               
Conread position:
               
1-568
               

               
Cow position:
               
chr28:21568731-21569288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 100
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:482883-482311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:2644540-2645111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:3626839-3627411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:3645272-3645833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:4958678-4958108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 10
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:5111893-5111325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:5210947-5211519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:5636876-5637448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:5748881-5748308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:5816477-5817019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:5824660-5825248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:5940311-5940884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:6472612-6472042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:6478045-6478616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:6535971-6535400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:6777179-6776605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 86
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:6959058-6959627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:7004852-7005425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 40
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:7335814-7336381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 102
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:10302665-10303236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 104
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:11544657-11544111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:12650055-12650616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:13462789-13463361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:14665972-14666543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 99
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:15917700-15917129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:16181193-16181766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:17391240-17391831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:17664141-17663551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 15
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:18517319-18516748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 77
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:20935588-20935014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:21379328-21379891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:21896120-21896680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:24302514-24301967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
142, 29
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:24885686-24886258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:26420175-26419603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:30097703-30098274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:30534236-30533662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:32786596-32786029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 10
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:33255147-33255719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 77
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:33639395-33639966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr28:34597072-34597642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 31
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr28:22255373-22254801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 85
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr28:34879675-34879841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
2-233
               

               
Cow position:
               
chr28:34408691-34408468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr28:25563234-25563527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 99
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr28:1384638-1384348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 31
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr28:25595729-25596091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 98
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr28:10458268-10457741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 61
               

               
Conread position:
               
2-512
               

               
Cow position:
               
chr28:10294626-10295156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 172
               

               
Conread position:
               
2-562
               

               
Cow position:
               
chr28:10279680-10280233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 99
               

               
Conread position:
               
2-570
               

               
Cow position:
               
chr28:957706-958258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 96
               

               
Conread position:
               
2-570
               

               
Cow position:
               
chr28:6230861-6230297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 55
               

               
Conread position:
               
2-570
               

               
Cow position:
               
chr28:6474420-6473858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 30
               

               
Conread position:
               
2-570
               

               
Cow position:
               
chr28:29435960-29435409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 97
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr28:23794733-23794231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
3-564
               

               
Cow position:
               
chr28:16041826-16041272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
3-568
               

               
Cow position:
               
chr28:3004692-3004122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 24
               

               
Conread position:
               
3-570
               

               
Cow position:
               
chr28:11502403-11501824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 525
               

               
Conread position:
               
3-570
               

               
Cow position:
               
chr28:29823015-29823583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 81
               

               
Conread position:
               
4-570
               

               
Cow position:
               
chr28:10480043-10479499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 23
               

               
Conread position:
               
5-173
               

               
Cow position:
               
chr28:21105274-21105112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
5-506
               

               
Cow position:
               
chr28:15600908-15600394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
5-512
               

               
Cow position:
               
chr28:3067720-3068240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
5-512
               

               
Cow position:
               
chr28:10643659-10643173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
5-512
               

               
Cow position:
               
chr28:30960383-30960896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
5-568
               

               
Cow position:
               
chr28:7654789-7654236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr28:23466751-23467085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
173, 5
               

               
Conread position:
               
6-570
               

               
Cow position:
               
chr28:1025499-1024935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 63
               

               
Conread position:
               
6-570
               

               
Cow position:
               
chr28:15428500-15429068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
7-183
               

               
Cow position:
               
chr28:14110902-14111072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
7-321
               

               
Cow position:
               
chr28:5337028-5336714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 77
               

               
Conread position:
               
7-416
               

               
Cow position:
               
chr28:24591705-24592111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 79
               

               
Conread position:
               
7-453
               

               
Cow position:
               
chr28:34582755-34583217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 79
               

               
Conread position:
               
7-512
               

               
Cow position:
               
chr28:28928667-28929184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 79
               

               
Conread position:
               
7-560
               

               
Cow position:
               
chr28:28470854-28471412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 79
               

               
Conread position:
               
7-561
               

               
Cow position:
               
chr28:444238-444797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
7-570
               

               
Cow position:
               
chr28:4929619-4929052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 79
               

               
Conread position:
               
7-570
               

               
Cow position:
               
chr28:7907713-7907148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 92
               

               
Conread position:
               
7-570
               

               
Cow position:
               
chr28:9181701-9182267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 80
               

               
Conread position:
               
7-570
               

               
Cow position:
               
chr28:28357952-28357386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 79
               

               
Conread position:
               
8-454
               

               
Cow position:
               
chr28:17249745-17249291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
236, 24
               

               
Conread position:
               
8-503
               

               
Cow position:
               
chr28:1196946-1197471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 78
               

               
Conread position:
               
8-561
               

               
Cow position:
               
chr28:6812482-6811943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
268, 13
               

               
Conread position:
               
8-570
               

               
Cow position:
               
chr28:26923796-26923231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 30
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr28:8787920-8788224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
243, 76
               

               
Conread position:
               
10-570
               

               
Cow position:
               
chr28:23310501-23309938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
11-275
               

               
Cow position:
               
chr28:13724706-13724960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
11-366
               

               
Cow position:
               
chr28:24734371-24734727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
11-472
               

               
Cow position:
               
chr28:32267003-32267464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
12-570
               

               
Cow position:
               
chr28:12997521-12998075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
15-555
               

               
Cow position:
               
chr28:10576177-10575635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 88
               

               
Conread position:
               
16-512
               

               
Cow position:
               
chr28:1956211-1956721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 70
               

               
Conread position:
               
16-570
               

               
Cow position:
               
chr28:4213733-4214288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 70
               

               
Conread position:
               
16-570
               

               
Cow position:
               
chr28:7443629-7443071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 70
               

               
Conread position:
               
16-570
               

               
Cow position:
               
chr28:29036812-29036254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 69
               

               
Conread position:
               
16-570
               

               
Cow position:
               
chr28:34730574-34731130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 83
               

               
Conread position:
               
18-348
               

               
Cow position:
               
chr28:25026721-25027047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
169, 83
               

               
Conread position:
               
18-491
               

               
Cow position:
               
chr28:10771928-10772412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 23
               

               
Conread position:
               
18-570
               

               
Cow position:
               
chr28:21362356-21362906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 68
               

               
Conread position:
               
22-570
               

               
Cow position:
               
chr28:4457172-4457731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
24-570
               

               
Cow position:
               
chr28:25069691-25070245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 8
               

               
Conread position:
               
25-570
               

               
Cow position:
               
chr28:17603175-17602643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 77
               

               
Conread position:
               
30-570
               

               
Cow position:
               
chr28:25849415-25849959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 56
               

               
Conread position:
               
32-265
               

               
Cow position:
               
chr28:30013054-30013285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
212, 54
               

               
Conread position:
               
32-318
               

               
Cow position:
               
chr28:7547592-7547876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 54
               

               
Conread position:
               
32-570
               

               
Cow position:
               
chr28:6046652-6047193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
38-431
               

               
Cow position:
               
chr28:5791653-5791240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
38-570
               

               
Cow position:
               
chr28:13606303-13606826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 63
               

               
Conread position:
               
38-570
               

               
Cow position:
               
chr28:28935101-28934565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 48
               

               
Conread position:
               
49-570
               

               
Cow position:
               
chr28:8718079-8717555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 51
               

               
Conread position:
               
51-366
               

               
Cow position:
               
chr28:3652122-3652428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 49
               

               
Conread position:
               
60-570
               

               
Cow position:
               
chr28:4376504-4376019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 49
               

               
Conread position:
               
61-493
               

               
Cow position:
               
chr28:24670679-24671130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 25
               

               
Conread position:
               
94-512
               

               
Cow position:
               
chr28:28184297-28184744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
94-570
               

               
Cow position:
               
chr28:5311886-5312372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 433
               

               
Conread position:
               
94-570
               

               
Cow position:
               
chr28:15054072-15054554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 429
               

               
Conread position:
               
108-568
               

               
Cow position:
               
chr28:17371668-17371248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
128-567
               

               
Cow position:
               
chr28:601227-600788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 60
               

               
Conread position:
               
130-570
               

               
Cow position:
               
chr28:7059178-7059628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 397
               

               
Conread position:
               
138-570
               

               
Cow position:
               
chr28:14149951-14150386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
145-512
               

               
Cow position:
               
chr28:21768330-21767946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 331
               

               
Conread position:
               
148-570
               

               
Cow position:
               
chr28:13522653-13523081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
154-506
               

               
Cow position:
               
chr28:25701960-25701590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
154-570
               

               
Cow position:
               
chr28:7744075-7744495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 366
               

               
Conread position:
               
165-570
               

               
Cow position:
               
chr28:9288410-9287995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 362
               

               
Conread position:
               
179-507
               

               
Cow position:
               
chr28:21104972-21104627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
179-570
               

               
Cow position:
               
chr28:10194608-10194207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 348
               

               
Conread position:
               
179-570
               

               
Cow position:
               
chr28:13323130-13323531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 348
               

               
Conread position:
               
203-570
               

               
Cow position:
               
chr28:7685914-7685542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
210-557
               

               
Cow position:
               
chr28:23839047-23839414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 242
               

               
Conread position:
               
226-512
               

               
Cow position:
               
chr28:5772472-5772769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
229-570
               

               
Cow position:
               
chr28:34083222-34082874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
242-570
               

               
Cow position:
               
chr28:1198260-1198593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
115, 265
               

               
Conread position:
               
243-570
               

               
Cow position:
               
chr28:30870142-30870470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
251-570
               

               
Cow position:
               
chr28:7785149-7784824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
260-569
               

               
Cow position:
               
chr28:331821-331503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
17, 261
               

               
Conread position:
               
275-570
               

               
Cow position:
               
chr28:16597248-16597545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
82, 197
               

               
Conread position:
               
283-518
               

               
Cow position:
               
chr28:23025480-23025730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 226
               

               
Conread position:
               
284-570
               

               
Cow position:
               
chr28:1384348-1384055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 220
               

               
Conread position:
               
292-567
               

               
Cow position:
               
chr28:15687416-15687689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
47, 155
               

               
Conread position:
               
293-570
               

               
Cow position:
               
chr28:24992603-24992885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
64, 229
               

               
Conread position:
               
295-501
               

               
Cow position:
               
chr28:10473085-10473305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
62, 165
               

               
Conread position:
               
308-500
               

               
Cow position:
               
chr28:33688729-33688935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
317-570
               

               
Cow position:
               
chr28:10578941-10578698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
332-570
               

               
Cow position:
               
chr28:10590093-10589846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
360-570
               

               
Cow position:
               
chr28:23868439-23868636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
365-469
               

               
Cow position:
               
chr28:19834319-19834421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
365-505
               

               
Cow position:
               
chr28:5770240-5770380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 110
               

               
Conread position:
               
365-525
               

               
Cow position:
               
chr28:28723433-28723595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
142, 155
               

               
Conread position:
               
365-570
               

               
Cow position:
               
chr28:1944090-1943898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
365-570
               

               
Cow position:
               
chr28:12936069-12935876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
365-570
               

               
Cow position:
               
chr28:13373333-13373141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
365-570
               

               
Cow position:
               
chr28:23543831-23544020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
365-570
               

               
Cow position:
               
chr28:29223080-29222887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
365-570
               

               
Cow position:
               
chr28:32588904-32589097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
365-571
               

               
Cow position:
               
chr28:24488180-24487988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
366-570
               

               
Cow position:
               
chr28:29807233-29807043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
367-570
               

               
Cow position:
               
chr28:23615350-23615542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
88, 139
               

               
Conread position:
               
367-570
               

               
Cow position:
               
chr28:25828602-25828793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
370-570
               

               
Cow position:
               
chr28:25408846-25409033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
370-570
               

               
Cow position:
               
chr28:34879230-34879045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
372-512
               

               
Cow position:
               
chr28:31322406-31322546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
380-567
               

               
Cow position:
               
chr28:28340076-28340250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
380-570
               

               
Cow position:
               
chr28:19300275-19300448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
387-519
               

               
Cow position:
               
chr28:330510-330379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
387-570
               

               
Cow position:
               
chr28:10870317-10870487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
392-570
               

               
Cow position:
               
chr28:5768183-5768348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
407-570
               

               
Cow position:
               
chr28:26718199-26718359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               
Show alignments to all cow chromosomes.