Cow genome map

Conread name: rspl25_i21.y1

Conread position: 1-203
Cow position: chr12:10988797-10988596 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 31

Conread position: 1-224
Cow position: chr12:6186707-6186931 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 149, 80

Conread position: 1-247
Cow position: chr12:22480567-22480317 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 165, 79

Conread position: 1-247
Cow position: chr12:34176997-34176747 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 146, 80

Conread position: 1-254
Cow position: chr12:31260967-31261223 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 146, 80

Conread position: 1-275
Cow position: chr12:29447248-29446969 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 191
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 131, 42

Conread position: 1-284
Cow position: chr12:13042799-13043091 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 146, 80

Conread position: 1-290
Cow position: chr12:15720124-15720418 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 140, 80

Conread position: 1-295
Cow position: chr12:36445828-36445527 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 163, 63

Conread position: 1-298
Cow position: chr12:10164523-10164824 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 208
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 127, 10

Conread position: 1-311
Cow position: chr12:2229013-2228695 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 163, 80

Conread position: 1-316
Cow position: chr12:22979451-22979773 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 164, 80

Conread position: 1-327
Cow position: chr12:24029040-24029372 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 162, 80

Conread position: 1-333
Cow position: chr12:10076100-10075763 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-333
Cow position: chr12:21452535-21452876 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-334
Cow position: chr12:15821163-15820831 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 224
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 244, 29

Conread position: 1-367
Cow position: chr12:41337790-41338170 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:61765-62146 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:249878-250251 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 67, 63

Conread position: 1-368
Cow position: chr12:259172-258791 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:5107500-5107119 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:7674344-7673963 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:11101690-11101310 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:16301896-16302277 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:19155419-19155798 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 43, 83

Conread position: 1-368
Cow position: chr12:21313989-21314368 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 257
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 131, 82

Conread position: 1-368
Cow position: chr12:21665578-21665197 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:21888600-21888981 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 78

Conread position: 1-368
Cow position: chr12:22202239-22202606 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 264
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:25148176-25148556 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-368
Cow position: chr12:27958083-27958464 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:27994543-27994162 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 263
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 163, 81

Conread position: 1-368
Cow position: chr12:31829007-31829388 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:32758138-32757758 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 12

Conread position: 1-368
Cow position: chr12:33925255-33925636 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr12:36287573-36287951 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-369
Cow position: chr12:21212225-21211844 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 265
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 146, 71

Conread position: 1-369
Cow position: chr12:21250872-21251251 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 261
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 162, 80

Conread position: 1-369
Cow position: chr12:22517412-22517791 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 80

Conread position: 1-371
Cow position: chr12:8841616-8841997 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 89

Conread position: 1-373
Cow position: chr12:10931528-10931142 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 81

Conread position: 1-374
Cow position: chr12:1408277-1407887 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 73, 275

Conread position: 1-375
Cow position: chr12:23137886-23138273 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-375
Cow position: chr12:48416300-48416689 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 272
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 109, 29

Conread position: 1-376
Cow position: chr12:1056066-1056453 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr12:1405889-1405503 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 78

Conread position: 1-376
Cow position: chr12:5110622-5111006 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 80

Conread position: 1-376
Cow position: chr12:5713409-5713018 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 72

Conread position: 1-376
Cow position: chr12:8839696-8839307 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr12:10359139-10358750 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 81

Conread position: 1-376
Cow position: chr12:12928468-12928852 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 80

Conread position: 1-376
Cow position: chr12:15925311-15925697 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr12:17718741-17718355 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 12

Conread position: 1-376
Cow position: chr12:21611045-21610658 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 56, 66

Conread position: 1-376
Cow position: chr12:22748658-22748269 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr12:31027378-31027766 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr12:32147187-32147573 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 77

Conread position: 1-376
Cow position: chr12:35547693-35548072 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 163, 19

Conread position: 1-376
Cow position: chr12:37562446-37562064 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 262
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 146, 53

Conread position: 1-376
Cow position: chr12:39930607-39930223 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 80

Conread position: 1-376
Cow position: chr12:46111675-46112063 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 80

Conread position: 2-286
Cow position: chr12:12177800-12178080 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 157, 81

Conread position: 2-334
Cow position: chr12:28571817-28571485 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 206, 64

Conread position: 2-368
Cow position: chr12:32339815-32340195 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 79

Conread position: 2-376
Cow position: chr12:42604743-42605121 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 25

Conread position: 3-327
Cow position: chr12:36213718-36213386 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 144, 78

Conread position: 3-362
Cow position: chr12:19198474-19198111 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 73

Conread position: 3-367
Cow position: chr12:27506209-27506587 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 78

Conread position: 3-368
Cow position: chr12:1007456-1007077 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 35

Conread position: 3-369
Cow position: chr12:21484842-21484472 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 252
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 183, 75

Conread position: 3-376
Cow position: chr12:8136548-8136934 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 257
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 65, 59

Conread position: 3-376
Cow position: chr12:8774104-8773720 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 56

Conread position: 3-376
Cow position: chr12:25313273-25313659 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 144, 80

Conread position: 3-376
Cow position: chr12:43681445-43681059 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 76

Conread position: 7-362
Cow position: chr12:3094186-3094564 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 110, 72

Conread position: 7-376
Cow position: chr12:9988251-9988632 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 267
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 135, 72

Conread position: 7-376
Cow position: chr12:32011341-32011724 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 266
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 157, 74

Conread position: 8-376
Cow position: chr12:2242555-2242930 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 262
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 151, 47

Conread position: 18-366
Cow position: chr12:27435736-27436081 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 245
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 146, 35

Conread position: 18-373
Cow position: chr12:19871639-19871271 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 99, 65

Conread position: 26-376
Cow position: chr12:14423767-14423404 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 55

Conread position: 35-334
Cow position: chr12:23378537-23378232 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 28

Conread position: 39-376
Cow position: chr12:27929387-27929737 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 18, 28

Conread position: 76-367
Cow position: chr12:35367772-35367468 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 77-376
Cow position: chr12:6105983-6106294 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 17, 134

Conread position: 83-376
Cow position: chr12:47803524-47803226 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 50

Conread position: 93-368
Cow position: chr12:8674712-8675004 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 0

Conread position: 93-368
Cow position: chr12:42232664-42232371 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 70, 0

Conread position: 94-369
Cow position: chr12:40306652-40306359 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.