Cow genome map

Conread name: rspl25_i21.y1

Conread position: 1-158
Cow position: chr13:2800118-2799965 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 1-159
Cow position: chr13:30241799-30241645 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 1-162
Cow position: chr13:34038325-34038481 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 1-164
Cow position: chr13:19638673-19638515 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 1-177
Cow position: chr13:46524437-46524251 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 1-229
Cow position: chr13:6343116-6342884 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 163, 80

Conread position: 1-236
Cow position: chr13:7870328-7870567 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 163, 80

Conread position: 1-239
Cow position: chr13:15525534-15525776 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 163, 80

Conread position: 1-240
Cow position: chr13:15446779-15447014 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 153, 26

Conread position: 1-247
Cow position: chr13:28130789-28131039 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 163, 80

Conread position: 1-264
Cow position: chr13:11822694-11822972 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 131, 82

Conread position: 1-272
Cow position: chr13:9537475-9537195 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 163, 80

Conread position: 1-272
Cow position: chr13:28414055-28414328 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 186
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 146, 80

Conread position: 1-274
Cow position: chr13:21134965-21134686 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 146, 64

Conread position: 1-294
Cow position: chr13:4663855-4663551 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 93, 52

Conread position: 1-298
Cow position: chr13:18945299-18945600 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 199
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 93, 63

Conread position: 1-299
Cow position: chr13:15280520-15280214 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 147, 17

Conread position: 1-299
Cow position: chr13:48945711-48945997 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 146, 82

Conread position: 1-307
Cow position: chr13:35540635-35540325 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 146, 19

Conread position: 1-308
Cow position: chr13:52085066-52085379 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 131, 60

Conread position: 1-310
Cow position: chr13:51298254-51298572 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 163, 80

Conread position: 1-327
Cow position: chr13:12618351-12618023 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 63

Conread position: 1-334
Cow position: chr13:19393890-19394226 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 75

Conread position: 1-351
Cow position: chr13:60465780-60466144 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-355
Cow position: chr13:19843699-19843338 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 37

Conread position: 1-362
Cow position: chr13:20778237-20778601 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 181, 41

Conread position: 1-368
Cow position: chr13:838173-838554 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr13:4944625-4944243 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 64

Conread position: 1-368
Cow position: chr13:6664894-6665275 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 79

Conread position: 1-368
Cow position: chr13:11390492-11390111 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 79

Conread position: 1-368
Cow position: chr13:14302753-14303130 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 163, 17

Conread position: 1-368
Cow position: chr13:15921226-15921604 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr13:18329891-18330272 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 269
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 95, 63

Conread position: 1-368
Cow position: chr13:19102443-19102820 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 19

Conread position: 1-368
Cow position: chr13:29055194-29055575 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr13:30652051-30652427 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 146, 77

Conread position: 1-368
Cow position: chr13:35760776-35760402 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr13:38612452-38612077 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr13:47357360-47357728 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 82

Conread position: 1-368
Cow position: chr13:53052070-53051689 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr13:55337971-55337596 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 80

Conread position: 1-368
Cow position: chr13:56692504-56692123 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-369
Cow position: chr13:5331569-5331190 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 23

Conread position: 1-369
Cow position: chr13:6718930-6719312 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-371
Cow position: chr13:32794109-32794487 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 162, 80

Conread position: 1-372
Cow position: chr13:22780754-22781137 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 262
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 67, 50

Conread position: 1-372
Cow position: chr13:31510380-31509995 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 80

Conread position: 1-374
Cow position: chr13:9570780-9571153 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 266
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 158, 73

Conread position: 1-374
Cow position: chr13:11254428-11254800 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 240, 80

Conread position: 1-376
Cow position: chr13:681285-680897 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 79

Conread position: 1-376
Cow position: chr13:2725573-2725964 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:2805048-2805436 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 77

Conread position: 1-376
Cow position: chr13:3657116-3657504 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:5229741-5230120 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 240, 80

Conread position: 1-376
Cow position: chr13:13332719-13333108 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:16248707-16249099 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 158, 77

Conread position: 1-376
Cow position: chr13:21905678-21906072 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 74

Conread position: 1-376
Cow position: chr13:26204225-26204612 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:28131740-28131352 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 273
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:32774118-32774499 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 74

Conread position: 1-376
Cow position: chr13:33522722-33523112 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 82

Conread position: 1-376
Cow position: chr13:33907528-33907907 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 267
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 126, 80

Conread position: 1-376
Cow position: chr13:34051853-34051468 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 79

Conread position: 1-376
Cow position: chr13:36936965-36936578 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr13:39911632-39911251 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 63

Conread position: 1-376
Cow position: chr13:42086896-42087282 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr13:46056176-46055789 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:49976904-49976516 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 80

Conread position: 1-376
Cow position: chr13:50189838-50190225 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:53157155-53157543 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr13:58313566-58313178 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr13:60646352-60646740 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 79

Conread position: 1-376
Cow position: chr13:61954476-61954089 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 268
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 151, 78

Conread position: 2-215
Cow position: chr13:60392768-60392550 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 64, 0

Conread position: 2-376
Cow position: chr13:44323732-44324115 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 76

Conread position: 3-253
Cow position: chr13:20561871-20562113 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 3-265
Cow position: chr13:15257120-15256849 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 61

Conread position: 3-358
Cow position: chr13:9048833-9048458 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 254
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 190

Conread position: 3-368
Cow position: chr13:31608205-31608586 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 77

Conread position: 3-368
Cow position: chr13:34345534-34345157 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 78

Conread position: 3-375
Cow position: chr13:28700052-28699669 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 268
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 156, 78

Conread position: 3-376
Cow position: chr13:2137946-2138332 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 270
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 162, 78

Conread position: 3-376
Cow position: chr13:16807821-16807443 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 267
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 161, 24

Conread position: 3-376
Cow position: chr13:17485820-17485437 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 262
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 127, 80

Conread position: 4-368
Cow position: chr13:43974722-43975098 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 60

Conread position: 4-376
Cow position: chr13:23266601-23266983 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 59

Conread position: 7-226
Cow position: chr13:30431344-30431140 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 7-366
Cow position: chr13:34376301-34376675 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 251
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 145, 76

Conread position: 7-368
Cow position: chr13:32733959-32734334 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 74

Conread position: 7-369
Cow position: chr13:6601893-6601534 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 244
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 87, 54

Conread position: 7-376
Cow position: chr13:22084999-22084622 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 76

Conread position: 15-376
Cow position: chr13:1442611-1442238 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 244
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 65

Conread position: 15-376
Cow position: chr13:18097402-18097776 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 22

Conread position: 18-376
Cow position: chr13:3001134-3001498 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 60

Conread position: 40-368
Cow position: chr13:45933946-45933604 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 124, 41

Conread position: 73-376
Cow position: chr13:20538377-20538697 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 23, 240

Conread position: 76-367
Cow position: chr13:13126551-13126861 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 76-368
Cow position: chr13:19566885-19566573 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 103

Conread position: 76-376
Cow position: chr13:504498-504180 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 18, 315

Conread position: 76-376
Cow position: chr13:31730407-31730725 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 18, 310

Conread position: 78-368
Cow position: chr13:58718712-58718410 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 18, 44

Conread position: 79-368
Cow position: chr13:46427880-46427574 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 87, 108

Conread position: 99-333
Cow position: chr13:47301765-47301518 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 65, 93

Show alignments to all cow chromosomes.