Cow genome map
| Conread name: | rspl25_i21.y1 |
| Conread position: | 1-149 |
| Cow position: | chr17:3197310-3197454 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:16505427-16505581 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-230 |
| Cow position: | chr17:8450030-8449800 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 1-247 |
| Cow position: | chr17:2521120-2521370 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-251 |
| Cow position: | chr17:21716782-21716528 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-253 |
| Cow position: | chr17:11913429-11913685 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 133, 74 |
| Conread position: | 1-253 |
| Cow position: | chr17:29041583-29041835 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 146, 52 |
| Conread position: | 1-264 |
| Cow position: | chr17:39823874-39824146 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-265 |
| Cow position: | chr17:3780970-3780710 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 133, 78 |
| Conread position: | 1-273 |
| Cow position: | chr17:38992072-38991792 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-283 |
| Cow position: | chr17:8994020-8994307 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 188, 80 |
| Conread position: | 1-317 |
| Cow position: | chr17:29471750-29471434 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 163, 36 |
| Conread position: | 1-322 |
| Cow position: | chr17:36284587-36284257 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-325 |
| Cow position: | chr17:1672617-1672287 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 163, 38 |
| Conread position: | 1-325 |
| Cow position: | chr17:6955959-6955635 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-327 |
| Cow position: | chr17:2583707-2583377 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 162, 74 |
| Conread position: | 1-327 |
| Cow position: | chr17:22563464-22563130 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 148, 81 |
| Conread position: | 1-359 |
| Cow position: | chr17:20225922-20225550 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-362 |
| Cow position: | chr17:33792392-33792040 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 1-366 |
| Cow position: | chr17:16854777-16855156 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 79 |
| Conread position: | 1-368 |
| Cow position: | chr17:1883563-1883199 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 240, 42 |
| Conread position: | 1-368 |
| Cow position: | chr17:1970471-1970090 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 79 |
| Conread position: | 1-368 |
| Cow position: | chr17:5806169-5806550 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr17:6612342-6611961 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr17:11083815-11084196 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr17:13910297-13910672 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 182, 82 |
| Conread position: | 1-368 |
| Cow position: | chr17:14243146-14242769 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-368 |
| Cow position: | chr17:15328601-15328220 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr17:15708673-15709054 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr17:20084491-20084872 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 146, 63 |
| Conread position: | 1-368 |
| Cow position: | chr17:20391094-20390713 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr17:25739616-25739243 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 78 |
| Conread position: | 1-368 |
| Cow position: | chr17:29950532-29950154 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 79 |
| Conread position: | 1-368 |
| Cow position: | chr17:40811063-40810690 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 152, 33 |
| Conread position: | 1-369 |
| Cow position: | chr17:4211249-4210867 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 163, 82 |
| Conread position: | 1-369 |
| Cow position: | chr17:15439111-15438731 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 80 |
| Conread position: | 1-371 |
| Cow position: | chr17:18099754-18100138 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-373 |
| Cow position: | chr17:15854055-15853668 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-374 |
| Cow position: | chr17:26829424-26829810 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-374 |
| Cow position: | chr17:29156693-29156314 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 1-375 |
| Cow position: | chr17:3305910-3305508 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 400 |
| Conread position: | 1-375 |
| Cow position: | chr17:16447162-16447545 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 163, 63 |
| Conread position: | 1-375 |
| Cow position: | chr17:23321100-23321483 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 80 |
| Conread position: | 1-375 |
| Cow position: | chr17:31232990-31232612 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 203, 78 |
| Conread position: | 1-375 |
| Cow position: | chr17:43471271-43471657 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:184467-184079 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:1311443-1311830 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 163, 78 |
| Conread position: | 1-376 |
| Cow position: | chr17:2265508-2265127 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 1-376 |
| Cow position: | chr17:2839338-2838965 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 48 |
| Conread position: | 1-376 |
| Cow position: | chr17:5638568-5638957 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 1-376 |
| Cow position: | chr17:5672196-5672585 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 1-376 |
| Cow position: | chr17:8223025-8222637 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:15118137-15117749 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:16869977-16870335 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 327, 63 |
| Conread position: | 1-376 |
| Cow position: | chr17:17221632-17221249 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 158, 41 |
| Conread position: | 1-376 |
| Cow position: | chr17:17957917-17957536 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:18777512-18777898 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 33 |
| Conread position: | 1-376 |
| Cow position: | chr17:20546457-20546069 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:21771000-21770612 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 79 |
| Conread position: | 1-376 |
| Cow position: | chr17:24785510-24785122 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:29075055-29075413 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 203, 56 |
| Conread position: | 1-376 |
| Cow position: | chr17:34235931-34236319 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr17:37528652-37529040 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 3-298 |
| Cow position: | chr17:21666317-21666018 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 137, 78 |
| Conread position: | 3-299 |
| Cow position: | chr17:18123358-18123658 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 201, 74 |
| Conread position: | 3-315 |
| Cow position: | chr17:44482165-44481842 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 3-334 |
| Cow position: | chr17:20091305-20091627 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 147, 61 |
| Conread position: | 3-362 |
| Cow position: | chr17:37415574-37415943 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 144, 58 |
| Conread position: | 3-376 |
| Cow position: | chr17:144889-145261 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 201, 55 |
| Conread position: | 3-376 |
| Cow position: | chr17:27978421-27978043 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 161, 50 |
| Conread position: | 7-349 |
| Cow position: | chr17:20078361-20078709 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 179, 75 |
| Conread position: | 7-369 |
| Cow position: | chr17:36790380-36790009 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 7-373 |
| Cow position: | chr17:9753099-9752724 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 55 |
| Conread position: | 7-376 |
| Cow position: | chr17:5043278-5043661 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 54 |
| Conread position: | 8-325 |
| Cow position: | chr17:50792-51111 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 157, 49 |
| Conread position: | 8-372 |
| Cow position: | chr17:21304602-21304227 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 75 |
| Conread position: | 8-376 |
| Cow position: | chr17:33289660-33290028 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 9-376 |
| Cow position: | chr17:22248940-22249319 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 72 |
| Conread position: | 16-375 |
| Cow position: | chr17:13921536-13921179 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 26-376 |
| Cow position: | chr17:453140-452784 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 103, 28 |
| Conread position: | 26-376 |
| Cow position: | chr17:14871978-14871603 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 138, 55 |
| Conread position: | 38-376 |
| Cow position: | chr17:15140056-15140406 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 126, 43 |
| Conread position: | 79-376 |
| Cow position: | chr17:18591667-18591355 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 106 |
| Conread position: | 95-376 |
| Cow position: | chr17:14932637-14932935 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 69, 290 |
Show alignments to all cow chromosomes.