Cow genome map
| Conread name: | rspl25_i21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr18:51580242-51580399 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-188 |
| Cow position: | chr18:45905331-45905519 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 141, 62 |
| Conread position: | 1-198 |
| Cow position: | chr18:29059278-29059476 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 1-215 |
| Cow position: | chr18:55699976-55700194 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 146, 77 |
| Conread position: | 1-247 |
| Cow position: | chr18:45978919-45978675 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 203, 80 |
| Conread position: | 1-254 |
| Cow position: | chr18:16025114-16025373 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 146, 77 |
| Conread position: | 1-287 |
| Cow position: | chr18:31139292-31139000 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 163, 19 |
| Conread position: | 1-291 |
| Cow position: | chr18:19461823-19461524 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-295 |
| Cow position: | chr18:41837547-41837850 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 164, 80 |
| Conread position: | 1-298 |
| Cow position: | chr18:51690340-51690034 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-301 |
| Cow position: | chr18:36770991-36771298 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 50 |
| Conread position: | 1-311 |
| Cow position: | chr18:29079280-29078961 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-313 |
| Cow position: | chr18:16857328-16857010 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-322 |
| Cow position: | chr18:3190287-3189977 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 80 |
| Conread position: | 1-327 |
| Cow position: | chr18:44261608-44261277 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 1-359 |
| Cow position: | chr18:13508525-13508885 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 1-368 |
| Cow position: | chr18:6733422-6733800 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:13270453-13270072 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:17670428-17670796 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 129, 82 |
| Conread position: | 1-368 |
| Cow position: | chr18:23701260-23701636 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:23802566-23802185 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 147, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:25923913-25923548 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 65 |
| Conread position: | 1-368 |
| Cow position: | chr18:26242916-26243296 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:28968746-28969127 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:30607239-30606858 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 79 |
| Conread position: | 1-368 |
| Cow position: | chr18:36512174-36511796 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 57 |
| Conread position: | 1-368 |
| Cow position: | chr18:37509505-37509131 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:38157999-38158380 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:51602122-51602503 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:52656337-52655969 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr18:54033251-54032880 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 193, 80 |
| Conread position: | 1-369 |
| Cow position: | chr18:16094428-16094046 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-369 |
| Cow position: | chr18:16471652-16472017 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 72 |
| Conread position: | 1-369 |
| Cow position: | chr18:33522761-33522388 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 78 |
| Conread position: | 1-369 |
| Cow position: | chr18:35057568-35057185 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 153, 82 |
| Conread position: | 1-369 |
| Cow position: | chr18:54047422-54047032 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-370 |
| Cow position: | chr18:51698183-51697806 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 1-371 |
| Cow position: | chr18:28929896-28930254 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 1-374 |
| Cow position: | chr18:6103861-6104246 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 1-376 |
| Cow position: | chr18:602921-603309 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:10292274-10291886 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:11870030-11869642 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:16463107-16463491 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 20 |
| Conread position: | 1-376 |
| Cow position: | chr18:18215470-18215861 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:23688715-23688327 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:24037303-24037691 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:24619966-24619584 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 78 |
| Conread position: | 1-376 |
| Cow position: | chr18:29071960-29071577 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 18 |
| Conread position: | 1-376 |
| Cow position: | chr18:36776819-36776431 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:37733232-37732845 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:47745296-47744908 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:48548366-48547994 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 244, 34 |
| Conread position: | 1-376 |
| Cow position: | chr18:50092901-50093289 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:51654138-51653755 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 80 |
| Conread position: | 1-376 |
| Cow position: | chr18:52574644-52574271 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 79 |
| Conread position: | 1-376 |
| Cow position: | chr18:55554794-55554406 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 78 |
| Conread position: | 3-293 |
| Cow position: | chr18:17944051-17943755 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 3-309 |
| Cow position: | chr18:21304045-21303727 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 3-309 |
| Cow position: | chr18:26335623-26335922 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 140, 55 |
| Conread position: | 3-366 |
| Cow position: | chr18:15172388-15172020 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 54 |
| Conread position: | 3-366 |
| Cow position: | chr18:25972525-25972897 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 128, 80 |
| Conread position: | 3-368 |
| Cow position: | chr18:14127746-14128122 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 144, 43 |
| Conread position: | 3-376 |
| Cow position: | chr18:2853247-2853635 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 80 |
| Conread position: | 3-376 |
| Cow position: | chr18:32164390-32164776 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 76 |
| Conread position: | 7-311 |
| Cow position: | chr18:970305-969999 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 144, 36 |
| Conread position: | 7-327 |
| Cow position: | chr18:53872430-53872101 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 7-369 |
| Cow position: | chr18:40342311-40342673 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 56 |
| Conread position: | 7-376 |
| Cow position: | chr18:10890285-10889929 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 7-376 |
| Cow position: | chr18:40195649-40195268 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 157, 74 |
| Conread position: | 7-376 |
| Cow position: | chr18:54065538-54065911 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 157, 20 |
| Conread position: | 8-283 |
| Cow position: | chr18:33406844-33406559 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 139, 71 |
| Conread position: | 9-284 |
| Cow position: | chr18:33851064-33850780 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 69 |
| Conread position: | 9-324 |
| Cow position: | chr18:30035196-30035499 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 138, 12 |
| Conread position: | 9-374 |
| Cow position: | chr18:17335206-17335578 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 157, 69 |
| Conread position: | 16-297 |
| Cow position: | chr18:36912861-36913133 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 228, 62 |
| Conread position: | 16-298 |
| Cow position: | chr18:36908332-36908605 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 228, 62 |
| Conread position: | 27-315 |
| Cow position: | chr18:10221167-10221464 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 120, 54 |
| Conread position: | 67-301 |
| Cow position: | chr18:14965769-14965519 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 76-337 |
| Cow position: | chr18:56483193-56483467 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 76-368 |
| Cow position: | chr18:37582985-37583295 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 76-368 |
| Cow position: | chr18:50834912-50835225 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 76-376 |
| Cow position: | chr18:32436629-32436946 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 78-368 |
| Cow position: | chr18:27539901-27539594 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 16 |
| Conread position: | 100-291 |
| Cow position: | chr18:19468980-19468776 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.