Cow genome map

Conread name: rspl25_i21.y1

Conread position: 1-150
Cow position: chr20:40423817-40423961 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 1-162
Cow position: chr20:35036868-35037025 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 1-183
Cow position: chr20:5077465-5077290 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 81

Conread position: 1-268
Cow position: chr20:14877570-14877296 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 145, 50

Conread position: 1-292
Cow position: chr20:20935625-20935918 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 185, 74

Conread position: 1-299
Cow position: chr20:33246801-33247100 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 203, 25

Conread position: 1-302
Cow position: chr20:28165354-28165051 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 131, 80

Conread position: 1-325
Cow position: chr20:11331162-11331495 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-327
Cow position: chr20:40256174-40255841 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 158, 82

Conread position: 1-334
Cow position: chr20:3782191-3782534 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 77

Conread position: 1-350
Cow position: chr20:9589290-9588925 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 249
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 151, 95

Conread position: 1-367
Cow position: chr20:10405206-10404829 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 255
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:5503235-5503616 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:6550486-6550867 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:7597350-7597726 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 163, 20

Conread position: 1-368
Cow position: chr20:9223364-9222983 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:10921414-10921791 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:13303786-13304167 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:15295529-15295151 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 53

Conread position: 1-368
Cow position: chr20:16559020-16559401 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:17657720-17658101 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 80

Conread position: 1-368
Cow position: chr20:22048878-22048497 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:23466138-23466519 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 26

Conread position: 1-368
Cow position: chr20:24399353-24399734 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 77

Conread position: 1-368
Cow position: chr20:26738289-26737908 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr20:27876995-27876612 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 158, 47

Conread position: 1-369
Cow position: chr20:12567808-12568186 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-371
Cow position: chr20:13653830-13654202 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 257
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 203, 14

Conread position: 1-371
Cow position: chr20:19364372-19364752 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 85

Conread position: 1-372
Cow position: chr20:4205161-4204780 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 78

Conread position: 1-373
Cow position: chr20:14756744-14757144 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 281
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 78, 53

Conread position: 1-375
Cow position: chr20:753953-753565 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr20:6135479-6135866 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr20:8445924-8445537 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 79

Conread position: 1-376
Cow position: chr20:10035238-10035610 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 203, 72

Conread position: 1-376
Cow position: chr20:12333187-12332808 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 132, 52

Conread position: 1-376
Cow position: chr20:12434888-12435274 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr20:13660833-13661221 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 258
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 9, 42

Conread position: 1-376
Cow position: chr20:14925130-14925518 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr20:15068330-15067938 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 276
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 24, 66

Conread position: 1-376
Cow position: chr20:19017900-19018280 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 140, 74

Conread position: 1-376
Cow position: chr20:20439457-20439846 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr20:21398329-21397943 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 89

Conread position: 1-376
Cow position: chr20:22060665-22061053 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr20:24567760-24568145 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr20:24904032-24904420 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 82

Conread position: 1-376
Cow position: chr20:25658511-25658899 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 73

Conread position: 1-376
Cow position: chr20:26052841-26053229 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr20:27994013-27994402 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 88

Conread position: 1-376
Cow position: chr20:30146943-30146559 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 78

Conread position: 1-376
Cow position: chr20:30384733-30385121 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 35

Conread position: 1-376
Cow position: chr20:30431791-30431396 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 79, 313

Conread position: 1-376
Cow position: chr20:31504845-31504454 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr20:34231358-34231732 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 80

Conread position: 1-376
Cow position: chr20:35159079-35159458 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 80

Conread position: 1-376
Cow position: chr20:37154454-37154843 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 3-162
Cow position: chr20:33731263-33731109 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 3-286
Cow position: chr20:27000005-26999714 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 165, 80

Conread position: 3-309
Cow position: chr20:32084930-32085259 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 3-322
Cow position: chr20:28113492-28113172 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 147, 80

Conread position: 3-368
Cow position: chr20:30479619-30479240 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 78

Conread position: 3-369
Cow position: chr20:12047989-12047624 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 256
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 201, 80

Conread position: 3-375
Cow position: chr20:13050048-13050447 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 272
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 154, 60

Conread position: 3-375
Cow position: chr20:14210868-14211253 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 256
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 378

Conread position: 3-375
Cow position: chr20:28443839-28444223 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 144, 78

Conread position: 3-376
Cow position: chr20:775168-774782 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 78

Conread position: 3-376
Cow position: chr20:7568463-7568841 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 265
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 131, 70

Conread position: 3-376
Cow position: chr20:7592949-7593328 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 263
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 131, 87

Conread position: 3-376
Cow position: chr20:13955134-13954754 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 270
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 129, 61

Conread position: 4-252
Cow position: chr20:18322055-18322299 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 143, 57

Conread position: 7-310
Cow position: chr20:7995037-7995349 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 152, 71

Conread position: 8-246
Cow position: chr20:26076061-26075820 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 137, 81

Conread position: 8-368
Cow position: chr20:30689378-30689006 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 263
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 139, 71

Conread position: 12-376
Cow position: chr20:20731759-20731383 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 147, 66

Conread position: 15-376
Cow position: chr20:34643507-34643141 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 66

Conread position: 26-368
Cow position: chr20:5085850-5086206 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 55

Conread position: 27-376
Cow position: chr20:13506076-13506434 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 120, 54

Conread position: 31-373
Cow position: chr20:34968465-34968108 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 245
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 116, 51

Conread position: 37-376
Cow position: chr20:3808297-3808649 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 44

Conread position: 38-375
Cow position: chr20:6053877-6054230 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 252
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 58, 131

Conread position: 39-368
Cow position: chr20:30579337-30578994 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 248
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 120, 42

Conread position: 70-368
Cow position: chr20:13024884-13025198 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 209
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 23

Conread position: 73-371
Cow position: chr20:9410809-9410492 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 65

Conread position: 75-367
Cow position: chr20:9996981-9996666 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 22, 47

Conread position: 76-374
Cow position: chr20:39284602-39284308 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 32, 44

Conread position: 76-376
Cow position: chr20:35093979-35093662 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 217
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 18, 154

Conread position: 77-376
Cow position: chr20:8970452-8970769 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 17, 309

Conread position: 84-327
Cow position: chr20:12155927-12156178 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 12, 230

Conread position: 93-368
Cow position: chr20:10790878-10790587 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 71, 54

Conread position: 93-376
Cow position: chr20:7810418-7810716 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 54, 146

Show alignments to all cow chromosomes.