Cow genome map
| Conread name: | rspl25_i21.y1 |
| Conread position: | 1-159 |
| Cow position: | chr23:39389511-39389357 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-159 |
| Cow position: | chr23:40553680-40553834 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-166 |
| Cow position: | chr23:39108378-39108538 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-236 |
| Cow position: | chr23:1321954-1322191 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 149, 82 |
| Conread position: | 1-246 |
| Cow position: | chr23:1535565-1535319 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 159, 78 |
| Conread position: | 1-247 |
| Cow position: | chr23:24098570-24098320 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-259 |
| Cow position: | chr23:29446507-29446763 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 203, 93 |
| Conread position: | 1-274 |
| Cow position: | chr23:20025376-20025094 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 142, 82 |
| Conread position: | 1-279 |
| Cow position: | chr23:3549753-3550039 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 163, 19 |
| Conread position: | 1-286 |
| Cow position: | chr23:40890213-40889925 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 131, 50 |
| Conread position: | 1-298 |
| Cow position: | chr23:671614-671308 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-302 |
| Cow position: | chr23:19493291-19492981 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-313 |
| Cow position: | chr23:27313287-27312966 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-315 |
| Cow position: | chr23:17404056-17403732 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 1-358 |
| Cow position: | chr23:1311128-1311499 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 1-362 |
| Cow position: | chr23:36027810-36028185 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-366 |
| Cow position: | chr23:2791331-2791702 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 80 |
| Conread position: | 1-366 |
| Cow position: | chr23:22143868-22144245 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-367 |
| Cow position: | chr23:2180407-2180784 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 164, 26 |
| Conread position: | 1-367 |
| Cow position: | chr23:30623059-30623435 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 79 |
| Conread position: | 1-367 |
| Cow position: | chr23:41015371-41014991 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:1048414-1048812 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 64, 206 |
| Conread position: | 1-368 |
| Cow position: | chr23:2761340-2760960 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:4636913-4637293 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:4892138-4891757 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:5624137-5624511 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 65 |
| Conread position: | 1-368 |
| Cow position: | chr23:10679391-10679772 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:11343939-11343558 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:14959515-14959888 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 63 |
| Conread position: | 1-368 |
| Cow position: | chr23:15529029-15528648 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:17846433-17846059 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 147, 76 |
| Conread position: | 1-368 |
| Cow position: | chr23:25351802-25351421 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:26828691-26828314 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 78 |
| Conread position: | 1-368 |
| Cow position: | chr23:27402576-27402198 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:30634152-30634533 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr23:39745302-39744925 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 80 |
| Conread position: | 1-369 |
| Cow position: | chr23:28222144-28221761 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 123, 80 |
| Conread position: | 1-369 |
| Cow position: | chr23:29459811-29460191 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 82 |
| Conread position: | 1-371 |
| Cow position: | chr23:14839746-14840116 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 208, 73 |
| Conread position: | 1-375 |
| Cow position: | chr23:1325873-1326259 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 163, 78 |
| Conread position: | 1-375 |
| Cow position: | chr23:5441359-5440973 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:771049-771437 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:954358-954742 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 79 |
| Conread position: | 1-376 |
| Cow position: | chr23:1338051-1338428 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 78 |
| Conread position: | 1-376 |
| Cow position: | chr23:1398788-1399157 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 1-376 |
| Cow position: | chr23:2320508-2320889 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 146, 42 |
| Conread position: | 1-376 |
| Cow position: | chr23:2408773-2409158 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 33 |
| Conread position: | 1-376 |
| Cow position: | chr23:5396137-5396526 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 1-376 |
| Cow position: | chr23:11070522-11070130 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 93 |
| Conread position: | 1-376 |
| Cow position: | chr23:11079827-11079438 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:11782228-11781838 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:15215395-15215780 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:19637464-19637827 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 151, 25 |
| Conread position: | 1-376 |
| Cow position: | chr23:20152778-20153167 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:25357788-25357400 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 1-376 |
| Cow position: | chr23:29043226-29042837 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:31704337-31703949 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr23:32007951-32008322 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 240, 76 |
| Conread position: | 2-376 |
| Cow position: | chr23:16495835-16496208 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 145, 77 |
| Conread position: | 3-286 |
| Cow position: | chr23:25554032-25553740 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 3-326 |
| Cow position: | chr23:6593495-6593816 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 3-326 |
| Cow position: | chr23:15180398-15180067 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 145, 74 |
| Conread position: | 3-333 |
| Cow position: | chr23:31833563-31833897 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 50 |
| Conread position: | 3-368 |
| Cow position: | chr23:1959567-1959189 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 78 |
| Conread position: | 3-368 |
| Cow position: | chr23:37199070-37199453 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 78 |
| Conread position: | 3-376 |
| Cow position: | chr23:345029-345401 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 206, 66 |
| Conread position: | 3-376 |
| Cow position: | chr23:4516973-4516595 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 74 |
| Conread position: | 3-376 |
| Cow position: | chr23:31605868-31605482 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 78 |
| Conread position: | 4-376 |
| Cow position: | chr23:14970515-14970897 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 74 |
| Conread position: | 7-350 |
| Cow position: | chr23:34468973-34469320 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 7-376 |
| Cow position: | chr23:7359893-7359515 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 8-281 |
| Cow position: | chr23:40773763-40773483 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 124, 73 |
| Conread position: | 8-323 |
| Cow position: | chr23:416362-416039 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 67 |
| Conread position: | 23-351 |
| Cow position: | chr23:25670364-25670692 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 26-368 |
| Cow position: | chr23:3877726-3878081 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 138, 55 |
| Conread position: | 31-282 |
| Cow position: | chr23:3167463-3167194 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 45-350 |
| Cow position: | chr23:29447852-29448169 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 114, 38 |
| Conread position: | 76-337 |
| Cow position: | chr23:3730213-3730486 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 76-376 |
| Cow position: | chr23:21277263-21277580 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 309 |
| Conread position: | 90-371 |
| Cow position: | chr23:26840311-26840021 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 93-367 |
| Cow position: | chr23:2720808-2720518 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 99-368 |
| Cow position: | chr23:21008256-21008543 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 65, 93 |
Show alignments to all cow chromosomes.