Cow genome map

Conread name: rspl25_i21.y1

Conread position: 1-159
Cow position: chr24:11940296-11940142 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 1-159
Cow position: chr24:17544409-17544563 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 1-172
Cow position: chr24:27762780-27762605 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 146, 82

Conread position: 1-194
Cow position: chr24:39482701-39482511 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 146, 77

Conread position: 1-204
Cow position: chr24:29064434-29064639 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 146, 78

Conread position: 1-238
Cow position: chr24:39067333-39067575 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 146, 78

Conread position: 1-240
Cow position: chr24:30870434-30870677 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 163, 80

Conread position: 1-262
Cow position: chr24:12696588-12696858 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 163, 80

Conread position: 1-263
Cow position: chr24:2948094-2947824 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 163, 80

Conread position: 1-282
Cow position: chr24:32823587-32823877 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 151, 82

Conread position: 1-283
Cow position: chr24:9900906-9900615 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 163, 80

Conread position: 1-286
Cow position: chr24:32853747-32853453 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 146, 80

Conread position: 1-287
Cow position: chr24:38296591-38296296 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 163, 80

Conread position: 1-298
Cow position: chr24:5279747-5279441 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 163, 80

Conread position: 1-303
Cow position: chr24:7959981-7960291 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 163, 80

Conread position: 1-308
Cow position: chr24:14250049-14250364 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 131, 80

Conread position: 1-308
Cow position: chr24:36308111-36307799 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 163, 20

Conread position: 1-325
Cow position: chr24:13496819-13496486 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 163, 80

Conread position: 1-326
Cow position: chr24:19675352-19675025 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 224
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 129, 33

Conread position: 1-327
Cow position: chr24:31357125-31356802 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 82

Conread position: 1-333
Cow position: chr24:40428159-40428500 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-334
Cow position: chr24:26847071-26847410 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 228
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 93, 62

Conread position: 1-337
Cow position: chr24:15667214-15667555 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 231
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 163, 76

Conread position: 1-342
Cow position: chr24:11104617-11104967 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-349
Cow position: chr24:22047534-22047894 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 146, 79

Conread position: 1-362
Cow position: chr24:29179895-29179522 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 68

Conread position: 1-363
Cow position: chr24:17161443-17161819 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-367
Cow position: chr24:13235800-13235424 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 163, 80

Conread position: 1-367
Cow position: chr24:15372307-15371935 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 27

Conread position: 1-367
Cow position: chr24:16908832-16908459 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 244
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 127, 60

Conread position: 1-368
Cow position: chr24:1841337-1841718 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr24:6413013-6412632 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr24:8607864-8607483 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr24:9549797-9549419 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 63

Conread position: 1-368
Cow position: chr24:11208072-11208453 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr24:17188739-17189120 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr24:22954097-22953716 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 80

Conread position: 1-368
Cow position: chr24:40272378-40272001 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 25

Conread position: 1-369
Cow position: chr24:28497600-28497980 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 77

Conread position: 1-369
Cow position: chr24:36036296-36036673 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 146, 55

Conread position: 1-371
Cow position: chr24:17105341-17105726 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 56

Conread position: 1-371
Cow position: chr24:20283677-20284059 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-371
Cow position: chr24:26412582-26412202 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-373
Cow position: chr24:14352887-14352501 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-373
Cow position: chr24:45003950-45003577 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 63

Conread position: 1-374
Cow position: chr24:28688946-28688579 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 77

Conread position: 1-374
Cow position: chr24:45087058-45086677 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 266
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 49, 79

Conread position: 1-375
Cow position: chr24:3851130-3850743 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-375
Cow position: chr24:12202982-12203361 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 258
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 138, 60

Conread position: 1-376
Cow position: chr24:207461-207858 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr24:3163005-3162617 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr24:3794017-3793631 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr24:5929314-5928926 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr24:5990652-5991036 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr24:6020543-6020931 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 12

Conread position: 1-376
Cow position: chr24:6325837-6326224 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 79

Conread position: 1-376
Cow position: chr24:9071312-9071694 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 81

Conread position: 1-376
Cow position: chr24:12090515-12090126 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 70

Conread position: 1-376
Cow position: chr24:12347859-12348247 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 133, 78

Conread position: 1-376
Cow position: chr24:14146633-14147018 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 267
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 37, 80

Conread position: 1-376
Cow position: chr24:16266987-16266610 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 104

Conread position: 1-376
Cow position: chr24:16646399-16646761 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 263
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 21, 65

Conread position: 1-376
Cow position: chr24:19643823-19643440 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 141, 62

Conread position: 1-376
Cow position: chr24:20367898-20367514 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 54

Conread position: 1-376
Cow position: chr24:22795093-22794706 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr24:22975342-22974954 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 80

Conread position: 1-376
Cow position: chr24:25372637-25372250 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr24:32361325-32361698 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 266
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 165, 30

Conread position: 1-376
Cow position: chr24:32608846-32608453 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 82

Conread position: 1-376
Cow position: chr24:36779805-36779418 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 65

Conread position: 1-376
Cow position: chr24:41062989-41062602 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 77

Conread position: 2-368
Cow position: chr24:35823671-35824047 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 78

Conread position: 3-287
Cow position: chr24:17368391-17368685 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 147, 78

Conread position: 3-287
Cow position: chr24:40036421-40036715 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 149, 75

Conread position: 3-297
Cow position: chr24:11462474-11462781 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 126, 24

Conread position: 3-327
Cow position: chr24:7749153-7748826 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 144, 46

Conread position: 3-350
Cow position: chr24:9088587-9088932 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 183, 61

Conread position: 3-368
Cow position: chr24:16558752-16559125 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 268
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 161, 72

Conread position: 3-368
Cow position: chr24:17764070-17764445 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 252
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 74

Conread position: 3-369
Cow position: chr24:18112988-18112610 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 130, 78

Conread position: 3-371
Cow position: chr24:7466780-7467146 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 241
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 127, 80

Conread position: 3-371
Cow position: chr24:40120567-40120941 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 127, 88

Conread position: 3-376
Cow position: chr24:14760426-14760040 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 273
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 69, 61

Conread position: 3-376
Cow position: chr24:15296648-15296262 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 77

Conread position: 3-376
Cow position: chr24:30893335-30893708 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 252
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 56

Conread position: 3-376
Cow position: chr24:31381920-31381547 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 267
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 201, 80

Conread position: 3-376
Cow position: chr24:36726685-36726303 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 262
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 129, 12

Conread position: 4-303
Cow position: chr24:6415694-6415388 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 130, 79

Conread position: 7-239
Cow position: chr24:31758763-31758995 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 189, 76

Conread position: 7-350
Cow position: chr24:17566373-17566024 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 152, 76

Conread position: 7-373
Cow position: chr24:42938432-42938809 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 254
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 91, 9

Conread position: 8-272
Cow position: chr24:28336534-28336802 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 182
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 124, 13

Conread position: 8-374
Cow position: chr24:14745888-14745513 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 253
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 160, 55

Conread position: 12-376
Cow position: chr24:17365455-17365833 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 131, 67

Conread position: 26-376
Cow position: chr24:7597049-7597412 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 55

Conread position: 31-362
Cow position: chr24:29181857-29181532 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 65, 22

Conread position: 39-246
Cow position: chr24:36404815-36404608 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 39

Conread position: 77-298
Cow position: chr24:40519139-40519373 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 206

Conread position: 78-363
Cow position: chr24:6544038-6543744 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 193
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 87, 168

Conread position: 78-367
Cow position: chr24:24249038-24249346 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 207

Conread position: 78-370
Cow position: chr24:39501130-39501441 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 109

Conread position: 79-304
Cow position: chr24:17406542-17406320 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 160, 15

Show alignments to all cow chromosomes.