Cow genome map
| Conread name: | rspl25_i21.y1 |
| Conread position: | 1-131 |
| Cow position: | chr25:16308974-16309100 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:4522579-4522826 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 142, 78 |
| Conread position: | 1-268 |
| Cow position: | chr25:29357780-29358056 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-287 |
| Cow position: | chr25:28275436-28275729 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-294 |
| Cow position: | chr25:39386597-39386899 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 139, 80 |
| Conread position: | 1-295 |
| Cow position: | chr25:18486691-18486395 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 82 |
| Conread position: | 1-298 |
| Cow position: | chr25:11124998-11124692 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-306 |
| Cow position: | chr25:40389504-40389815 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 152, 42 |
| Conread position: | 1-324 |
| Cow position: | chr25:19923753-19923427 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 79 |
| Conread position: | 1-327 |
| Cow position: | chr25:27231587-27231256 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 163, 29 |
| Conread position: | 1-328 |
| Cow position: | chr25:2516230-2515902 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 52 |
| Conread position: | 1-351 |
| Cow position: | chr25:35589309-35588946 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-352 |
| Cow position: | chr25:34164330-34164690 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 80 |
| Conread position: | 1-359 |
| Cow position: | chr25:32610188-32610550 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-366 |
| Cow position: | chr25:2594999-2594625 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 1-367 |
| Cow position: | chr25:35039647-35040031 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 62 |
| Conread position: | 1-368 |
| Cow position: | chr25:7223200-7223580 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:17904872-17904491 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:18886252-18886630 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 1-368 |
| Cow position: | chr25:19139340-19139721 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:23394097-23393724 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 128, 63 |
| Conread position: | 1-368 |
| Cow position: | chr25:24654942-24655318 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:26282256-26281876 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 1-368 |
| Cow position: | chr25:26705650-26706031 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:28863104-28862722 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:29525635-29526010 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:31073364-31073745 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:34502990-34503371 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-368 |
| Cow position: | chr25:41121236-41120860 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 158, 59 |
| Conread position: | 1-370 |
| Cow position: | chr25:32577430-32577813 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-374 |
| Cow position: | chr25:10137046-10136669 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 1-374 |
| Cow position: | chr25:14756183-14756563 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 18 |
| Conread position: | 1-374 |
| Cow position: | chr25:34508950-34509333 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 146, 72 |
| Conread position: | 1-375 |
| Cow position: | chr25:11665895-11665520 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 133, 82 |
| Conread position: | 1-375 |
| Cow position: | chr25:18490297-18489909 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 152, 82 |
| Conread position: | 1-376 |
| Cow position: | chr25:9647190-9646808 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 128, 78 |
| Conread position: | 1-376 |
| Cow position: | chr25:12938975-12939363 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr25:13429880-13430263 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 1-376 |
| Cow position: | chr25:25826682-25826298 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 135, 63 |
| Conread position: | 1-376 |
| Cow position: | chr25:26780854-26781238 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr25:26914462-26914081 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 146, 63 |
| Conread position: | 1-376 |
| Cow position: | chr25:33262860-33262464 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 1-376 |
| Cow position: | chr25:35567654-35568040 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr25:36350970-36350584 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 3-303 |
| Cow position: | chr25:7800247-7799945 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 3-358 |
| Cow position: | chr25:6955297-6954929 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 161, 15 |
| Conread position: | 3-368 |
| Cow position: | chr25:13787204-13786826 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 161, 78 |
| Conread position: | 3-376 |
| Cow position: | chr25:18474428-18474050 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 76 |
| Conread position: | 3-376 |
| Cow position: | chr25:34673356-34673727 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 131, 78 |
| Conread position: | 3-376 |
| Cow position: | chr25:35553898-35553514 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 4-362 |
| Cow position: | chr25:20495773-20495425 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 167, 71 |
| Conread position: | 4-369 |
| Cow position: | chr25:26353557-26353934 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 42 |
| Conread position: | 5-376 |
| Cow position: | chr25:19367471-19367850 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 7-368 |
| Cow position: | chr25:18072451-18072087 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 140, 76 |
| Conread position: | 7-375 |
| Cow position: | chr25:26931322-26930941 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 153, 76 |
| Conread position: | 7-376 |
| Cow position: | chr25:17585796-17586176 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 157, 74 |
| Conread position: | 9-225 |
| Cow position: | chr25:9054886-9054674 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 202, 62 |
| Conread position: | 26-333 |
| Cow position: | chr25:35372406-35372722 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 138, 55 |
| Conread position: | 27-376 |
| Cow position: | chr25:20772128-20772482 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 137, 53 |
| Conread position: | 38-368 |
| Cow position: | chr25:10633814-10634155 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 68-372 |
| Cow position: | chr25:449623-449942 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 186 |
| Conread position: | 73-317 |
| Cow position: | chr25:33838549-33838290 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 73-376 |
| Cow position: | chr25:28420538-28420855 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 186 |
| Conread position: | 76-246 |
| Cow position: | chr25:24228176-24228352 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 81-369 |
| Cow position: | chr25:24204973-24205261 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 93-368 |
| Cow position: | chr25:35571963-35571671 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 71, 99 |
| Conread position: | 94-322 |
| Cow position: | chr25:30811067-30810832 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 44 |
Show alignments to all cow chromosomes.