Cow genome map
| Conread name: | rspl25_i21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr27:12239510-12239354 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-191 |
| Cow position: | chr27:1124184-1124380 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 148, 82 |
| Conread position: | 1-202 |
| Cow position: | chr27:9090081-9089885 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 130, 29 |
| Conread position: | 1-243 |
| Cow position: | chr27:25112603-25112359 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 1-247 |
| Cow position: | chr27:15866860-15867102 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 212, 63 |
| Conread position: | 1-286 |
| Cow position: | chr27:9970614-9970320 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-286 |
| Cow position: | chr27:30036314-30036024 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 158, 82 |
| Conread position: | 1-290 |
| Cow position: | chr27:2331946-2331648 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 162, 80 |
| Conread position: | 1-291 |
| Cow position: | chr27:15406064-15405772 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 1-298 |
| Cow position: | chr27:22647189-22647495 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-299 |
| Cow position: | chr27:13901567-13901260 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 1-326 |
| Cow position: | chr27:24239687-24240003 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 203, 73 |
| Conread position: | 1-327 |
| Cow position: | chr27:17565198-17565526 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 129, 55 |
| Conread position: | 1-328 |
| Cow position: | chr27:25792101-25792424 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 1-334 |
| Cow position: | chr27:29467371-29467033 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 163, 63 |
| Conread position: | 1-350 |
| Cow position: | chr27:15033448-15033811 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 79 |
| Conread position: | 1-367 |
| Cow position: | chr27:8201378-8201001 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:344487-344861 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:3232091-3232472 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:8959573-8959967 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:11481374-11480993 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 158, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:12006591-12006210 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:14380746-14380383 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 160, 75 |
| Conread position: | 1-368 |
| Cow position: | chr27:22797216-22797595 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:26330375-26329995 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 80 |
| Conread position: | 1-368 |
| Cow position: | chr27:29035939-29036307 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-369 |
| Cow position: | chr27:9333110-9332744 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 203, 80 |
| Conread position: | 1-369 |
| Cow position: | chr27:12282133-12281758 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 129, 62 |
| Conread position: | 1-374 |
| Cow position: | chr27:27930639-27930264 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 1-376 |
| Cow position: | chr27:165477-165864 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 36 |
| Conread position: | 1-376 |
| Cow position: | chr27:1501956-1501589 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 73 |
| Conread position: | 1-376 |
| Cow position: | chr27:2001288-2000900 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 80 |
| Conread position: | 1-376 |
| Cow position: | chr27:3653257-3653645 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 163, 89 |
| Conread position: | 1-376 |
| Cow position: | chr27:5983587-5983975 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr27:10579386-10579002 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 20 |
| Conread position: | 1-376 |
| Cow position: | chr27:11434610-11434231 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 158, 60 |
| Conread position: | 1-376 |
| Cow position: | chr27:13353749-13353361 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 1-376 |
| Cow position: | chr27:15375245-15374874 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 6 |
| Conread position: | 1-376 |
| Cow position: | chr27:16030954-16031342 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr27:19523266-19523654 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr27:20810859-20810476 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 78 |
| Conread position: | 1-376 |
| Cow position: | chr27:21451886-21451500 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 146, 79 |
| Conread position: | 1-376 |
| Cow position: | chr27:25800768-25801150 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 137, 80 |
| Conread position: | 1-376 |
| Cow position: | chr27:27291836-27291444 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 1-376 |
| Cow position: | chr27:27729048-27729433 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 159, 78 |
| Conread position: | 1-376 |
| Cow position: | chr27:30306826-30307213 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 1-376 |
| Cow position: | chr27:30783346-30782960 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 93, 60 |
| Conread position: | 2-376 |
| Cow position: | chr27:6523838-6524224 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 52 |
| Conread position: | 3-298 |
| Cow position: | chr27:16787857-16788154 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 156, 72 |
| Conread position: | 3-368 |
| Cow position: | chr27:3990359-3990738 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 78 |
| Conread position: | 3-371 |
| Cow position: | chr27:23317511-23317882 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 138, 80 |
| Conread position: | 3-372 |
| Cow position: | chr27:4824265-4823885 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 108, 71 |
| Conread position: | 7-368 |
| Cow position: | chr27:15272639-15273006 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 157, 57 |
| Conread position: | 7-369 |
| Cow position: | chr27:27557240-27556867 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 7-376 |
| Cow position: | chr27:8592823-8592454 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 292 |
| Conread position: | 8-367 |
| Cow position: | chr27:15349091-15348725 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 49 |
| Conread position: | 26-368 |
| Cow position: | chr27:13309062-13308706 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 55 |
| Conread position: | 70-238 |
| Cow position: | chr27:26644883-26645053 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 73-369 |
| Cow position: | chr27:26552018-26552320 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 77-376 |
| Cow position: | chr27:20001777-20001471 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 94-369 |
| Cow position: | chr27:28051431-28051722 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 139 |
Show alignments to all cow chromosomes.