Cow genome map

Conread name: rspl25_i21.y1

Conread position: 1-131
Cow position: chr28:24644949-24644823 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 1-159
Cow position: chr28:12156168-12156014 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 1-159
Cow position: chr28:19194008-19193854 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 1-214
Cow position: chr28:7981474-7981687 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 146, 27

Conread position: 1-236
Cow position: chr28:16211846-16212079 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 208, 82

Conread position: 1-245
Cow position: chr28:15715460-15715213 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 153, 78

Conread position: 1-275
Cow position: chr28:23868727-23868445 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 163, 76

Conread position: 1-292
Cow position: chr28:29222796-29223096 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 146, 77

Conread position: 1-295
Cow position: chr28:5770508-5770221 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 206, 82

Conread position: 1-295
Cow position: chr28:25828884-25828581 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 163, 80

Conread position: 1-298
Cow position: chr28:32589188-32588882 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 163, 80

Conread position: 1-306
Cow position: chr28:12429693-12429383 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 162, 23

Conread position: 1-317
Cow position: chr28:29806952-29807275 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 163, 82

Conread position: 1-333
Cow position: chr28:1943807-1944147 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 240
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 146, 78

Conread position: 1-333
Cow position: chr28:8786805-8786460 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 57

Conread position: 1-350
Cow position: chr28:30870563-30870198 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 253
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 153, 82

Conread position: 1-351
Cow position: chr28:15054645-15054281 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-355
Cow position: chr28:3001370-3001735 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 83

Conread position: 1-358
Cow position: chr28:1198684-1198313 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 80

Conread position: 1-359
Cow position: chr28:24992976-24992604 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-365
Cow position: chr28:15687780-15687412 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 251
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 149, 63

Conread position: 1-367
Cow position: chr28:8717464-8717844 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 262
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 95, 63

Conread position: 1-368
Cow position: chr28:1811495-1811856 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 63

Conread position: 1-368
Cow position: chr28:5111235-5111613 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 14

Conread position: 1-368
Cow position: chr28:5211610-5211230 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:5312463-5312082 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:5748217-5748598 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:5940975-5940594 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 80

Conread position: 1-368
Cow position: chr28:7059719-7059338 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:10194116-10194497 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:13323622-13323241 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:13463452-13463071 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:14150477-14150102 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 164, 82

Conread position: 1-368
Cow position: chr28:17391922-17391541 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 80

Conread position: 1-368
Cow position: chr28:20934923-20935304 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 80

Conread position: 1-368
Cow position: chr28:25070336-25069949 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 271
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 55, 66

Conread position: 1-368
Cow position: chr28:25850050-25849669 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:26419512-26419892 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 80

Conread position: 1-368
Cow position: chr28:29823674-29823294 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr28:33255809-33255429 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 26

Conread position: 1-368
Cow position: chr28:33640057-33639678 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 80

Conread position: 1-369
Cow position: chr28:5637539-5637158 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 266
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 146, 80

Conread position: 1-369
Cow position: chr28:21362997-21362621 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 158, 82

Conread position: 1-369
Cow position: chr28:28471508-28471132 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 260
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 163, 18

Conread position: 1-369
Cow position: chr28:29435318-29435687 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 261
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 163, 74

Conread position: 1-370
Cow position: chr28:5825338-5824943 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 146, 76

Conread position: 1-370
Cow position: chr28:21104490-21104865 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 258
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 240, 77

Conread position: 1-371
Cow position: chr28:5772897-5772527 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 254
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 140, 68

Conread position: 1-373
Cow position: chr28:34597734-34597347 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 81

Conread position: 1-375
Cow position: chr28:23309847-23310234 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr28:444897-444509 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr28:482220-482607 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 78

Conread position: 1-376
Cow position: chr28:2645202-2644816 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr28:3627502-3627114 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr28:6473767-6474151 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 260
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 163, 82

Conread position: 1-376
Cow position: chr28:6478707-6478320 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr28:6535309-6535697 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr28:7336472-7336084 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr28:7784734-7785119 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 49

Conread position: 1-376
Cow position: chr28:7907057-7907444 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr28:9182358-9181970 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 79

Conread position: 1-376
Cow position: chr28:9287904-9288292 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr28:10295288-10294911 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 253
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 133, 82

Conread position: 1-376
Cow position: chr28:10303326-10302939 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr28:10772565-10772184 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 76

Conread position: 1-376
Cow position: chr28:12650707-12650331 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr28:14666634-14666246 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 76

Conread position: 1-376
Cow position: chr28:16181857-16181469 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr28:21896770-21896383 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 12

Conread position: 1-376
Cow position: chr28:24886349-24885961 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr28:34082781-34083169 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 263
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 130, 76

Conread position: 1-376
Cow position: chr28:34731220-34730833 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 53

Conread position: 2-334
Cow position: chr28:23615632-23615290 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 243
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 145, 75

Conread position: 2-368
Cow position: chr28:7744586-7744211 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 162, 71

Conread position: 3-149
Cow position: chr28:1214294-1214436 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 3-266
Cow position: chr28:24997421-24997689 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 57, 65

Conread position: 3-327
Cow position: chr28:28723710-28723382 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 136, 78

Conread position: 3-369
Cow position: chr28:21569385-21569010 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 62

Conread position: 3-372
Cow position: chr28:1024846-1025230 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 258
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 144, 80

Conread position: 3-375
Cow position: chr28:26923142-26923528 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 266
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 144, 80

Conread position: 3-376
Cow position: chr28:4958020-4958403 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 24

Conread position: 3-376
Cow position: chr28:6776516-6776902 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 78

Conread position: 3-376
Cow position: chr28:11501735-11502115 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 156, 80

Conread position: 3-376
Cow position: chr28:15351637-15352019 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 252
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 165, 78

Conread position: 3-376
Cow position: chr28:21379981-21379607 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 259
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 62

Conread position: 3-376
Cow position: chr28:25701461-25701835 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 160, 27

Conread position: 3-376
Cow position: chr28:28357297-28357683 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 78

Conread position: 3-376
Cow position: chr28:30098363-30097979 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 78

Conread position: 3-376
Cow position: chr28:30966688-30966309 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 243
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 144, 68

Conread position: 4-298
Cow position: chr28:2222876-2223183 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 215
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 61

Conread position: 7-277
Cow position: chr28:23544106-23543830 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 186
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 84

Conread position: 7-368
Cow position: chr28:28934480-28934855 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 74

Conread position: 7-373
Cow position: chr28:5804749-5804374 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 76

Conread position: 7-374
Cow position: chr28:7685459-7685833 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 262
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 89, 44

Conread position: 7-376
Cow position: chr28:4214373-4213995 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 74

Conread position: 7-376
Cow position: chr28:10479417-10479787 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 253
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 152, 20

Conread position: 12-376
Cow position: chr28:6471962-6472336 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 69

Conread position: 26-376
Cow position: chr28:13523147-13522786 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 133, 56

Conread position: 71-369
Cow position: chr28:958284-957981 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 34, 186

Conread position: 73-367
Cow position: chr28:14492734-14492442 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 21, 136

Conread position: 76-368
Cow position: chr28:4929031-4929342 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 227
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 18, 117

Conread position: 77-368
Cow position: chr28:7443051-7443361 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 17, 116

Conread position: 78-311
Cow position: chr28:12170052-12169813 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 28

Conread position: 78-376
Cow position: chr28:4817185-4816879 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 64

Conread position: 97-376
Cow position: chr28:331503-331799 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 57

Conread position: 106-376
Cow position: chr28:12216901-12217188 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 58, 86

Show alignments to all cow chromosomes.