Cow genome map

Conread name: rspl25_i21.y1

Conread position: 1-158
Cow position: chr29:17794462-17794310 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 1-175
Cow position: chr29:18365162-18365339 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 82

Conread position: 1-213
Cow position: chr29:10297404-10297616 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 146, 75

Conread position: 1-228
Cow position: chr29:35736282-35736051 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 163, 80

Conread position: 1-229
Cow position: chr29:4875679-4875903 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 141, 63

Conread position: 1-237
Cow position: chr29:35076584-35076344 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 158, 80

Conread position: 1-246
Cow position: chr29:960661-960412 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 163, 81

Conread position: 1-247
Cow position: chr29:5785954-5785704 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 168
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 146, 80

Conread position: 1-247
Cow position: chr29:10032194-10032444 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 163, 80

Conread position: 1-247
Cow position: chr29:19524679-19524929 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 163, 80

Conread position: 1-253
Cow position: chr29:7290004-7289753 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 63

Conread position: 1-273
Cow position: chr29:13128857-13128588 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 203, 80

Conread position: 1-273
Cow position: chr29:16097272-16096991 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 163, 80

Conread position: 1-285
Cow position: chr29:32316529-32316237 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 131, 80

Conread position: 1-295
Cow position: chr29:27259423-27259728 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 163, 82

Conread position: 1-298
Cow position: chr29:11119252-11119558 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 163, 80

Conread position: 1-306
Cow position: chr29:26263082-26262768 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 1-313
Cow position: chr29:34851214-34850897 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 140, 80

Conread position: 1-325
Cow position: chr29:24983111-24983440 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 163, 80

Conread position: 1-327
Cow position: chr29:5961463-5961130 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 132, 80

Conread position: 1-333
Cow position: chr29:16185319-16185660 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-334
Cow position: chr29:9639069-9639412 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 240
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 158, 77

Conread position: 1-366
Cow position: chr29:40618395-40618769 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 257
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 163, 89

Conread position: 1-367
Cow position: chr29:12798043-12797664 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 83

Conread position: 1-368
Cow position: chr29:2103302-2102926 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 80

Conread position: 1-368
Cow position: chr29:2837876-2838257 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:3330052-3329671 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:8623748-8624117 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:10820255-10820636 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:15072021-15072402 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:18011035-18010654 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:19619809-19620189 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:20254624-20254246 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:21474609-21474228 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-368
Cow position: chr29:22279832-22279453 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 66

Conread position: 1-368
Cow position: chr29:22746360-22745979 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 80

Conread position: 1-368
Cow position: chr29:23980170-23979790 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-368
Cow position: chr29:24806915-24806534 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:28696919-28697299 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 80

Conread position: 1-368
Cow position: chr29:32515788-32515407 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 79

Conread position: 1-368
Cow position: chr29:32543597-32543217 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 67

Conread position: 1-368
Cow position: chr29:34794399-34794784 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 1-368
Cow position: chr29:35002214-35002578 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:38349902-38350276 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 80

Conread position: 1-368
Cow position: chr29:40157204-40156823 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:40294767-40294386 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-368
Cow position: chr29:42255518-42255899 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-369
Cow position: chr29:6218351-6218728 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 262
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 131, 46

Conread position: 1-374
Cow position: chr29:7847852-7847463 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-375
Cow position: chr29:32556284-32556671 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr29:607188-607565 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr29:727189-726801 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr29:1478911-1478524 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr29:2307461-2307074 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 151, 78

Conread position: 1-376
Cow position: chr29:4864780-4864397 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 73

Conread position: 1-376
Cow position: chr29:6934943-6934564 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 80

Conread position: 1-376
Cow position: chr29:7427682-7428070 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr29:9079337-9079728 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 158, 78

Conread position: 1-376
Cow position: chr29:13623914-13624302 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr29:16347671-16347278 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 270
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 77, 14

Conread position: 1-376
Cow position: chr29:17153696-17153317 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 73

Conread position: 1-376
Cow position: chr29:21227435-21227048 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 80

Conread position: 1-376
Cow position: chr29:27702537-27702149 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr29:28656908-28657296 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 1-376
Cow position: chr29:31184836-31184448 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 89

Conread position: 1-376
Cow position: chr29:31765499-31765112 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 17

Conread position: 1-376
Cow position: chr29:32289844-32289463 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 263
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 131, 77

Conread position: 1-376
Cow position: chr29:32962765-32962386 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 49

Conread position: 1-376
Cow position: chr29:35265377-35264989 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 1-376
Cow position: chr29:36209154-36208769 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 52

Conread position: 1-376
Cow position: chr29:36633899-36634278 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 203, 63

Conread position: 1-376
Cow position: chr29:39076258-39076646 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 42, 81

Conread position: 1-376
Cow position: chr29:45462691-45462305 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 80

Conread position: 2-264
Cow position: chr29:24951928-24951658 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 188
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 150, 51

Conread position: 2-352
Cow position: chr29:20999670-20999332 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 256
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 145, 73

Conread position: 3-159
Cow position: chr29:8589284-8589436 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 64

Conread position: 3-207
Cow position: chr29:19761516-19761312 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 144, 63

Conread position: 3-328
Cow position: chr29:37451534-37451222 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 91, 59

Conread position: 3-369
Cow position: chr29:15941568-15941948 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 140, 92

Conread position: 3-369
Cow position: chr29:21255409-21255040 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 129, 80

Conread position: 3-369
Cow position: chr29:21535465-21535835 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 233
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 151, 108

Conread position: 3-369
Cow position: chr29:32807818-32807459 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 261
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 160, 61

Conread position: 3-373
Cow position: chr29:24578110-24577726 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 59

Conread position: 3-376
Cow position: chr29:6860275-6860661 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 256
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 135, 55

Conread position: 3-376
Cow position: chr29:11786461-11786075 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 263
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 33, 81

Conread position: 3-376
Cow position: chr29:32292052-32291665 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 78

Conread position: 3-376
Cow position: chr29:35273581-35273967 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 78

Conread position: 3-376
Cow position: chr29:38409655-38409265 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 144, 78

Conread position: 3-376
Cow position: chr29:45651087-45651478 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 270
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 156, 48

Conread position: 7-368
Cow position: chr29:15943802-15943432 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 239
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 127, 76

Conread position: 7-375
Cow position: chr29:16035963-16036344 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 74

Conread position: 7-376
Cow position: chr29:3169419-3169783 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 243
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 56

Conread position: 9-367
Cow position: chr29:38229459-38229087 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 72

Conread position: 9-372
Cow position: chr29:35739249-35739614 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 258
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 150, 74

Conread position: 9-374
Cow position: chr29:2298867-2299229 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 254
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 121, 69

Conread position: 12-298
Cow position: chr29:40116761-40116458 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 18-368
Cow position: chr29:16101675-16102038 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 145, 63

Conread position: 26-359
Cow position: chr29:27976570-27976916 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 55

Conread position: 26-376
Cow position: chr29:21429425-21429788 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 55

Conread position: 31-376
Cow position: chr29:17408556-17408204 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 101, 31

Conread position: 73-325
Cow position: chr29:5977927-5978191 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 78-373
Cow position: chr29:34331041-34331355 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 94-322
Cow position: chr29:18523053-18523286 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 40

Conread position: 94-368
Cow position: chr29:407903-408185 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 110, 66

Show alignments to all cow chromosomes.