Cow genome map
| Conread name: | rspl37_l12.y1 |
| Conread position: | 1-173 |
| Cow position: | chr19:23614926-23615098 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-279 |
| Cow position: | chr19:23650208-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 1-299 |
| Cow position: | chr19:23597431-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 1-311 |
| Cow position: | chr19:23597347-23597657 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 1-323 |
| Cow position: | chr19:23614758-23615080 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 1-360 |
| Cow position: | chr19:14959176-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 1-363 |
| Cow position: | chr19:23650124-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 1-398 |
| Cow position: | chr19:20635483-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 71, 53 |
| Conread position: | 1-452 |
| Cow position: | chr19:43570242-43569791 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 1-467 |
| Cow position: | chr19:14940390-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 169 |
| Conread position: | 1-467 |
| Cow position: | chr19:43570158-43569694 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 1-470 |
| Cow position: | chr19:23613414-23613883 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 1-471 |
| Cow position: | chr19:14940138-14940608 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 247 |
| Conread position: | 1-476 |
| Cow position: | chr19:23614422-23614897 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 399 |
| Conread position: | 1-477 |
| Cow position: | chr19:23613918-23614393 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 160 |
| Conread position: | 1-481 |
| Cow position: | chr19:14960241-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 93 |
| Conread position: | 1-481 |
| Cow position: | chr19:23613498-23613978 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 1-485 |
| Cow position: | chr19:23597095-23597579 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 84 |
| Conread position: | 1-485 |
| Cow position: | chr19:23649452-23649936 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 240 |
| Conread position: | 1-490 |
| Cow position: | chr19:14948484-14947996 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 309 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 169, 78 |
| Conread position: | 1-491 |
| Cow position: | chr19:14940558-14941048 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-492 |
| Cow position: | chr19:23649536-23650027 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 263 |
| Conread position: | 1-498 |
| Cow position: | chr19:23596930-23597424 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 155, 103 |
| Conread position: | 1-498 |
| Cow position: | chr19:23613666-23614163 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 324 |
| Conread position: | 1-498 |
| Cow position: | chr19:23649872-23650369 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 1-499 |
| Cow position: | chr19:14940222-14940720 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 337 |
| Conread position: | 1-500 |
| Cow position: | chr19:14940054-14940552 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 161 |
| Conread position: | 1-500 |
| Cow position: | chr19:14960325-14959829 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 160 |
| Conread position: | 1-500 |
| Cow position: | chr19:23614506-23615004 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 1-504 |
| Cow position: | chr19:23614338-23614842 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 482 |
| Conread position: | 1-509 |
| Cow position: | chr19:23614170-23614678 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 156 |
| Conread position: | 1-510 |
| Cow position: | chr19:14940306-14940815 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 84 |
| Conread position: | 1-510 |
| Cow position: | chr19:14940474-14940983 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 176 |
| Conread position: | 1-510 |
| Cow position: | chr19:14960409-14959902 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 1-510 |
| Cow position: | chr19:23613750-23614259 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 154 |
| Conread position: | 1-510 |
| Cow position: | chr19:23614086-23614595 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 317 |
| Conread position: | 1-510 |
| Cow position: | chr19:23649788-23650297 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 246 |
| Conread position: | 2-481 |
| Cow position: | chr19:23614005-23614482 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 2-481 |
| Cow position: | chr19:43570398-43569930 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 299 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 85, 5 |
| Conread position: | 4-436 |
| Cow position: | chr19:14959257-14958831 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 379, 137 |
| Conread position: | 4-510 |
| Cow position: | chr19:23596849-23597352 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 202, 184 |
| Conread position: | 5-326 |
| Cow position: | chr19:14940730-14941051 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 6-305 |
| Cow position: | chr19:20678442-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 265, 0 |
| Conread position: | 6-399 |
| Cow position: | chr19:14960154-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 328, 322 |
| Conread position: | 6-479 |
| Cow position: | chr19:20635646-20635173 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 304 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 6-479 |
| Cow position: | chr19:20678190-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 253, 242 |
| Conread position: | 7-443 |
| Cow position: | chr19:14940648-14941084 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 321, 329 |
| Conread position: | 7-481 |
| Cow position: | chr19:20677687-20678161 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 301 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 141, 170 |
| Conread position: | 7-486 |
| Cow position: | chr19:20677855-20678333 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 160, 150 |
| Conread position: | 11-492 |
| Cow position: | chr19:23597189-23597670 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-488 |
| Cow position: | chr19:23649379-23649855 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 325 |
| Conread position: | 13-279 |
| Cow position: | chr19:23614854-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 136, 143 |
| Conread position: | 13-280 |
| Cow position: | chr19:14959575-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 157, 146 |
| Conread position: | 13-479 |
| Cow position: | chr19:20678281-20678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 159 |
| Conread position: | 13-480 |
| Cow position: | chr19:20677609-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 13-481 |
| Cow position: | chr19:20635555-20635087 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 126 |
| Conread position: | 13-506 |
| Cow position: | chr19:20677945-20678438 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 312, 322 |
| Conread position: | 15-481 |
| Cow position: | chr19:20677359-20677825 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 16-481 |
| Cow position: | chr19:20677528-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 17-509 |
| Cow position: | chr19:14960477-14959987 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 19-498 |
| Cow position: | chr19:14939988-14940467 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 19-510 |
| Cow position: | chr19:23649302-23649793 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 312 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 20-481 |
| Cow position: | chr19:20635715-20635255 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 20-481 |
| Cow position: | chr19:20678120-20678581 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 21-510 |
| Cow position: | chr19:23613350-23613839 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 23-498 |
| Cow position: | chr19:43570459-43569997 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 25-486 |
| Cow position: | chr19:20677453-20677914 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 206, 211 |
| Conread position: | 43-448 |
| Cow position: | chr19:14959711-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 274, 60 |
| Conread position: | 81-491 |
| Cow position: | chr19:23597091-23597501 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 256 |
| Conread position: | 88-481 |
| Cow position: | chr19:14959257-14958870 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 70 |
| Conread position: | 96-481 |
| Cow position: | chr19:14948471-14948089 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 98-497 |
| Cow position: | chr19:23649297-23649696 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 107-507 |
| Cow position: | chr19:20635713-20635313 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-491 |
| Cow position: | chr19:14948486-14948163 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 161, 81 |
| Conread position: | 182-510 |
| Cow position: | chr19:23649297-23649625 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 125, 131 |
| Conread position: | 196-510 |
| Cow position: | chr19:14939999-14940311 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 7 |
Show alignments to all cow chromosomes.