Cow genome map
| Conread name: | rspl37_l12.y1 |
| Conread position: | 1-226 |
| Cow position: | chr23:24654181-24654406 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 1-232 |
| Cow position: | chr23:24535645-24535413 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 1-267 |
| Cow position: | chr23:24546930-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 1-267 |
| Cow position: | chr23:25723979-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 1-278 |
| Cow position: | chr23:24535729-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-289 |
| Cow position: | chr23:24626456-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 147, 154 |
| Conread position: | 1-326 |
| Cow position: | chr23:24626372-24626697 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 149, 154 |
| Conread position: | 1-429 |
| Cow position: | chr23:24547098-24546670 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 336 |
| Conread position: | 1-448 |
| Cow position: | chr23:25698508-25698061 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 149, 158 |
| Conread position: | 1-450 |
| Cow position: | chr23:24560574-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 337 |
| Conread position: | 1-466 |
| Cow position: | chr23:24639616-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 84 |
| Conread position: | 1-481 |
| Cow position: | chr23:24522336-24521854 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 248 |
| Conread position: | 1-485 |
| Cow position: | chr23:24522669-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 309, 67 |
| Conread position: | 1-485 |
| Cow position: | chr23:25660215-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 178 |
| Conread position: | 1-488 |
| Cow position: | chr23:25626094-25626581 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 245 |
| Conread position: | 1-491 |
| Cow position: | chr23:24547182-24546692 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 1-492 |
| Cow position: | chr23:24547266-24546775 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 1-492 |
| Cow position: | chr23:24639364-24639855 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 1-492 |
| Cow position: | chr23:25626595-25627087 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 1-497 |
| Cow position: | chr23:24639280-24639776 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 1-498 |
| Cow position: | chr23:24560658-24560161 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 408 |
| Conread position: | 1-498 |
| Cow position: | chr23:25698592-25698095 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 311 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 150, 160 |
| Conread position: | 1-510 |
| Cow position: | chr23:24639532-24640041 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 154 |
| Conread position: | 1-510 |
| Cow position: | chr23:25626262-25626768 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 259 |
| Conread position: | 2-493 |
| Cow position: | chr23:24639197-24639688 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 311 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 148, 159 |
| Conread position: | 6-310 |
| Cow position: | chr23:24654102-24654406 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 164, 157 |
| Conread position: | 6-327 |
| Cow position: | chr23:25724058-25723737 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-492 |
| Cow position: | chr23:24535976-24535490 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 73 |
| Conread position: | 6-498 |
| Cow position: | chr23:24560821-24560329 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 324 |
| Conread position: | 16-450 |
| Cow position: | chr23:24626303-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 0 |
| Conread position: | 16-471 |
| Cow position: | chr23:24536050-24535595 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 16-510 |
| Cow position: | chr23:25660146-25660640 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 17-510 |
| Cow position: | chr23:24547334-24546841 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 18-492 |
| Cow position: | chr23:25625945-25626417 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 302 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 286, 18 |
| Conread position: | 20-401 |
| Cow position: | chr23:24522569-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 306, 316 |
| Conread position: | 21-510 |
| Cow position: | chr23:24560890-24560401 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 22-509 |
| Cow position: | chr23:24522814-24522332 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 244, 27 |
| Conread position: | 25-481 |
| Cow position: | chr23:24560718-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-384 |
| Cow position: | chr23:24654043-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 37-427 |
| Cow position: | chr23:24535861-24535471 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 288 |
| Conread position: | 44-510 |
| Cow position: | chr23:24536106-24535640 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 292 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 85-492 |
| Cow position: | chr23:25698676-25698269 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 336, 319 |
| Conread position: | 90-451 |
| Cow position: | chr23:25724058-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 234 |
| Conread position: | 91-460 |
| Cow position: | chr23:24654017-24654388 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 92-498 |
| Cow position: | chr23:24522828-24522427 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 99-498 |
| Cow position: | chr23:24626302-24626701 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 99-498 |
| Cow position: | chr23:25660145-25660544 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 101-510 |
| Cow position: | chr23:25724131-25723722 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 189-498 |
| Cow position: | chr23:24639216-24639525 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 165, 173 |
| Conread position: | 204-509 |
| Cow position: | chr23:24654048-24654353 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 131, 126 |
| Conread position: | 204-510 |
| Cow position: | chr23:25625961-25626267 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 209-488 |
| Cow position: | chr23:25724107-25723828 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 264-485 |
| Cow position: | chr23:24560899-24560678 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 76 |
Show alignments to all cow chromosomes.