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Cow genome map

           
Conread name:
           
rspl40_a19.y1
        

               
Conread position:
               
1-142
               

               
Cow position:
               
chr1:38692660-38692518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:90413376-90413211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
5, 41
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr1:13195426-13195602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:77132600-77132396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
5, 99
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr1:53540384-53540163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:85411574-85411342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 80
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr1:64189494-64189264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr1:51836566-51836327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 155
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:30413588-30413330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 131
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:8869666-8869922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
5, 99
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:21679148-21678882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:80973610-80973887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 162
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:97100323-97100586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr1:22777550-22777837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:33986516-33986804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:54162811-54163096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 141
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr1:81913161-81913425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr1:43703398-43703242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chr1:20544287-20544126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
4-168
               

               
Cow position:
               
chr1:50345534-50345375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
4-171
               

               
Cow position:
               
chr1:63362868-63363027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr1:8192741-8192904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr1:765576-765770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr1:58825533-58825340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr1:69415721-69415946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chr1:85596933-85596708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 100
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr1:20288113-20287878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr1:14528204-14528443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr1:91066162-91066402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr1:21954240-21954473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr1:77658059-77657811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr1:81355716-81355958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr1:56635088-56634841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
4-266
               

               
Cow position:
               
chr1:71136141-71135887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 92
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr1:3323857-3323593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 111
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr1:18223881-18224144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr1:73196242-73196509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
159, 75
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:16972850-16973115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
216, 95
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr1:10719489-10719757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 87
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr1:35170326-35170061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
125, 49
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:31390600-31390858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
4-310
               

               
Cow position:
               
chr1:49131122-49131435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 309
               

               
Conread position:
               
5-129
               

               
Cow position:
               
chr1:22387953-22388072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
5-146
               

               
Cow position:
               
chr1:85596055-85596200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
5-148
               

               
Cow position:
               
chr1:46205809-46205666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-152
               

               
Cow position:
               
chr1:101771894-101771753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
5-161
               

               
Cow position:
               
chr1:57782996-57782845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
5-166
               

               
Cow position:
               
chr1:75347613-75347451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chr1:38525580-38525419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chr1:45638478-45638305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr1:2997937-2997758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr1:89548182-89548000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 113
               

               
Conread position:
               
5-192
               

               
Cow position:
               
chr1:69004386-69004201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
5-194
               

               
Cow position:
               
chr1:89443490-89443670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chr1:45673700-45673494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
78, 84
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr1:30441946-30441730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
186, 47
               

               
Conread position:
               
5-229
               

               
Cow position:
               
chr1:79278457-79278670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr1:9443857-9444094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr1:5162056-5162299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 170
               

               
Conread position:
               
5-247
               

               
Cow position:
               
chr1:32244407-32244645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 195
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr1:7142857-7143099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
5-251
               

               
Cow position:
               
chr1:74947129-74947367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
5-253
               

               
Cow position:
               
chr1:80764547-80764787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chr1:29975611-29975852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chr1:61737086-61736848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chr1:81161991-81161762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chr1:94526490-94526239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chr1:99807729-99807977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 178
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chr1:86113414-86113669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
78, 146
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr1:46839593-46839336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr1:93110629-93110900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr1:56643598-56643902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr1:101812285-101812583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 152
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr1:56408608-56408295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 74
               

               
Conread position:
               
5-337
               

               
Cow position:
               
chr1:82370732-82370414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr1:41697047-41696815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
6-256
               

               
Cow position:
               
chr1:22448596-22448839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
7-247
               

               
Cow position:
               
chr1:95765101-95765335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr1:35843947-35844187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
7-273
               

               
Cow position:
               
chr1:97619847-97620111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
8-201
               

               
Cow position:
               
chr1:15333872-15333677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 116
               

               
Conread position:
               
8-247
               

               
Cow position:
               
chr1:70533952-70534180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
8-251
               

               
Cow position:
               
chr1:74084204-74084439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr1:23099887-23099643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
169, 96
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:43380040-43380284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr1:78791319-78791567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
217, 15
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr1:91816787-91817047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr1:84235345-84235516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
9-188
               

               
Cow position:
               
chr1:20581927-20581761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr1:84015863-84015653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
9-230
               

               
Cow position:
               
chr1:5062014-5061792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:94404198-94403977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr1:81277215-81277448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 124
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr1:2765398-2765169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
9-251
               

               
Cow position:
               
chr1:32341222-32341457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr1:6794937-6795190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr1:60907361-60907107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 96
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr1:666350-666105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr1:78092021-78091777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
9-262
               

               
Cow position:
               
chr1:97422311-97422559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
9-263
               

               
Cow position:
               
chr1:4291146-4290897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chr1:82337792-82338070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
10-119
               

               
Cow position:
               
chr1:67564872-67564976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
10-133
               

               
Cow position:
               
chr1:25610489-25610612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
10-139
               

               
Cow position:
               
chr1:6734450-6734322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
10-139
               

               
Cow position:
               
chr1:50045786-50045657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
10-238
               

               
Cow position:
               
chr1:73561664-73561887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
10-247
               

               
Cow position:
               
chr1:25184117-25183879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
10-247
               

               
Cow position:
               
chr1:53423668-53423432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
10-273
               

               
Cow position:
               
chr1:73522162-73522416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
230, 74
               

               
Conread position:
               
11-153
               

               
Cow position:
               
chr1:52449621-52449764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
11-225
               

               
Cow position:
               
chr1:15691318-15691113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chr1:24597641-24597414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
11-240
               

               
Cow position:
               
chr1:88529814-88530026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 56
               

               
Conread position:
               
11-250
               

               
Cow position:
               
chr1:68618948-68619186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
11-251
               

               
Cow position:
               
chr1:28567448-28567688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
11-268
               

               
Cow position:
               
chr1:12595919-12596167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 68
               

               
Conread position:
               
11-274
               

               
Cow position:
               
chr1:63504318-63504065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
241, 60
               

               
Conread position:
               
12-250
               

               
Cow position:
               
chr1:25793451-25793689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
12-251
               

               
Cow position:
               
chr1:9869863-9870106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
12-251
               

               
Cow position:
               
chr1:63434821-63435053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 68
               

               
Conread position:
               
12-255
               

               
Cow position:
               
chr1:58889308-58889549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 148
               

               
Conread position:
               
12-256
               

               
Cow position:
               
chr1:1878013-1877772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
12-256
               

               
Cow position:
               
chr1:7800597-7800357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
12-256
               

               
Cow position:
               
chr1:55357302-55357541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
12-277
               

               
Cow position:
               
chr1:1165586-1165324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
13-138
               

               
Cow position:
               
chr1:29657810-29657686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
13-218
               

               
Cow position:
               
chr1:64938958-64939160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 108
               

               
Conread position:
               
13-218
               

               
Cow position:
               
chr1:97786163-97785966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
13-229
               

               
Cow position:
               
chr1:18283466-18283269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 53
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr1:100512581-100512359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
13-254
               

               
Cow position:
               
chr1:71045738-71045502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 81
               

               
Conread position:
               
13-265
               

               
Cow position:
               
chr1:20422222-20422472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
13-275
               

               
Cow position:
               
chr1:40497553-40497310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
255, 36
               

               
Conread position:
               
14-128
               

               
Cow position:
               
chr1:44746846-44746734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
14-180
               

               
Cow position:
               
chr1:60532528-60532363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr1:78750705-78750921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 139
               

               
Conread position:
               
14-239
               

               
Cow position:
               
chr1:51770071-51769847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
14-240
               

               
Cow position:
               
chr1:99208693-99208912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr1:28176989-28176756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
14-251
               

               
Cow position:
               
chr1:24558890-24558661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
176, 84
               

               
Conread position:
               
14-251
               

               
Cow position:
               
chr1:90423102-90423336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
14-251
               

               
Cow position:
               
chr1:102647289-102647519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
14-256
               

               
Cow position:
               
chr1:23633929-23634155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
14-256
               

               
Cow position:
               
chr1:61661314-61661560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr1:50634420-50634675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 10
               

               
Conread position:
               
14-274
               

               
Cow position:
               
chr1:69940983-69941241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 70
               

               
Conread position:
               
15-186
               

               
Cow position:
               
chr1:71303109-71302945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
15-238
               

               
Cow position:
               
chr1:21934195-21934409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr1:63905490-63905721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
15-255
               

               
Cow position:
               
chr1:67014361-67014130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
15-256
               

               
Cow position:
               
chr1:34000895-34000650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
15-256
               

               
Cow position:
               
chr1:44165063-44164824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
15-321
               

               
Cow position:
               
chr1:68826924-68827225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
300, 67
               

               
Conread position:
               
16-248
               

               
Cow position:
               
chr1:81319271-81319043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
119, 14
               

               
Conread position:
               
16-288
               

               
Cow position:
               
chr1:6941443-6941180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
266, 66
               

               
Conread position:
               
16-289
               

               
Cow position:
               
chr1:6958856-6958590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
241, 66
               

               
Conread position:
               
16-289
               

               
Cow position:
               
chr1:31871405-31871132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 241
               

               
Conread position:
               
16-305
               

               
Cow position:
               
chr1:48581113-48580827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
17-212
               

               
Cow position:
               
chr1:43872352-43872543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
17-240
               

               
Cow position:
               
chr1:62732555-62732336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
17-256
               

               
Cow position:
               
chr1:8595-8367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
17-256
               

               
Cow position:
               
chr1:69695013-69695264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
19-251
               

               
Cow position:
               
chr1:67995108-67994880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
19-255
               

               
Cow position:
               
chr1:20521714-20521936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
19-275
               

               
Cow position:
               
chr1:75443445-75443690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
19-288
               

               
Cow position:
               
chr1:15037303-15037045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
20-254
               

               
Cow position:
               
chr1:95215206-95215439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
79, 5
               

               
Conread position:
               
20-256
               

               
Cow position:
               
chr1:31934491-31934258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
20-256
               

               
Cow position:
               
chr1:82884413-82884640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr1:29916384-29916142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
99, 131
               

               
Conread position:
               
20-289
               

               
Cow position:
               
chr1:98613210-98612952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 34
               

               
Conread position:
               
21-223
               

               
Cow position:
               
chr1:102312890-102313089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
167, 63
               

               
Conread position:
               
21-247
               

               
Cow position:
               
chr1:31399250-31399472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
22-239
               

               
Cow position:
               
chr1:76096409-76096201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
22-292
               

               
Cow position:
               
chr1:53039727-53039989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
23-249
               

               
Cow position:
               
chr1:7657340-7657562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
202, 74
               

               
Conread position:
               
23-255
               

               
Cow position:
               
chr1:85783497-85783272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
23-256
               

               
Cow position:
               
chr1:66355743-66355964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
229, 62
               

               
Conread position:
               
23-274
               

               
Cow position:
               
chr1:41735651-41735898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
23-275
               

               
Cow position:
               
chr1:77118563-77118799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
24-256
               

               
Cow position:
               
chr1:26688503-26688733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
24-268
               

               
Cow position:
               
chr1:76850754-76850990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
26-275
               

               
Cow position:
               
chr1:56073491-56073736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
27-179
               

               
Cow position:
               
chr1:75199110-75198966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
27-255
               

               
Cow position:
               
chr1:3657396-3657621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
29-305
               

               
Cow position:
               
chr1:4385328-4385043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
125, 91
               

               
Conread position:
               
31-256
               

               
Cow position:
               
chr1:90864328-90864555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
32-234
               

               
Cow position:
               
chr1:20799849-20799639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
51, 122
               

               
Conread position:
               
32-240
               

               
Cow position:
               
chr1:70236324-70236532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
32-257
               

               
Cow position:
               
chr1:72011845-72012059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 61
               

               
Conread position:
               
34-157
               

               
Cow position:
               
chr1:73363709-73363829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
58-204
               

               
Cow position:
               
chr1:80438821-80438963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
59-236
               

               
Cow position:
               
chr1:92642504-92642676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 103
               
Show alignments to all cow chromosomes.