Cow genome map
| Conread name: | rspl40_a19.y1 |
| Conread position: | 4-184 |
| Cow position: | chr12:3906419-3906240 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 4-195 |
| Cow position: | chr12:41642376-41642196 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 102, 45 |
| Conread position: | 4-218 |
| Cow position: | chr12:17702281-17702495 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 83 |
| Conread position: | 4-229 |
| Cow position: | chr12:48406064-48405858 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 4-245 |
| Cow position: | chr12:35706985-35707214 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 4-247 |
| Cow position: | chr12:23379523-23379283 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 4-251 |
| Cow position: | chr12:9914734-9914494 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 4-253 |
| Cow position: | chr12:27055552-27055311 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-270 |
| Cow position: | chr12:20312226-20312480 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 4-274 |
| Cow position: | chr12:27038808-27039084 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 4-275 |
| Cow position: | chr12:8868930-8869202 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 78 |
| Conread position: | 4-289 |
| Cow position: | chr12:33458094-33457820 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 5-209 |
| Cow position: | chr12:38484445-38484651 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 16, 172 |
| Conread position: | 5-227 |
| Cow position: | chr12:28559243-28559024 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 87 |
| Conread position: | 5-238 |
| Cow position: | chr12:18417516-18417281 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 5-247 |
| Cow position: | chr12:34103187-34103426 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 5-251 |
| Cow position: | chr12:12938976-12939225 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 230 |
| Conread position: | 5-256 |
| Cow position: | chr12:24559302-24559052 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 61 |
| Conread position: | 5-256 |
| Cow position: | chr12:31198711-31198468 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 5-256 |
| Cow position: | chr12:35807627-35807376 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 5-262 |
| Cow position: | chr12:47799878-47800120 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 5-264 |
| Cow position: | chr12:25619427-25619686 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 153 |
| Conread position: | 6-263 |
| Cow position: | chr12:5800978-5800732 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 7-186 |
| Cow position: | chr12:6117846-6117670 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 149 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 7-238 |
| Cow position: | chr12:32400143-32399914 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 7-256 |
| Cow position: | chr12:34385568-34385814 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 8-229 |
| Cow position: | chr12:34089785-34089559 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 185 |
| Conread position: | 8-241 |
| Cow position: | chr12:44438914-44439136 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 8-256 |
| Cow position: | chr12:2813168-2812927 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 8-256 |
| Cow position: | chr12:16851065-16851308 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 8-287 |
| Cow position: | chr12:18769129-18769407 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 148 |
| Conread position: | 9-135 |
| Cow position: | chr12:41093883-41094008 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 9-218 |
| Cow position: | chr12:3994898-3994687 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 74, 95 |
| Conread position: | 9-240 |
| Cow position: | chr12:1504964-1504743 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 9-247 |
| Cow position: | chr12:6164082-6164320 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 9-253 |
| Cow position: | chr12:11696623-11696397 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 8, 135 |
| Conread position: | 9-255 |
| Cow position: | chr12:39753811-39753562 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 10-237 |
| Cow position: | chr12:25320862-25320642 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 10-256 |
| Cow position: | chr12:11056814-11056576 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 11-250 |
| Cow position: | chr12:36012673-36012902 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 11-254 |
| Cow position: | chr12:9710270-9710502 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 12-240 |
| Cow position: | chr12:22047411-22047186 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 12-255 |
| Cow position: | chr12:31959827-31959594 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 12-256 |
| Cow position: | chr12:19866180-19865942 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 12-256 |
| Cow position: | chr12:30438181-30437951 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 13-178 |
| Cow position: | chr12:37394655-37394483 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 153 |
| Conread position: | 13-251 |
| Cow position: | chr12:5797615-5797839 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 13-251 |
| Cow position: | chr12:45541671-45541438 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 13-256 |
| Cow position: | chr12:30596406-30596163 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 13-256 |
| Cow position: | chr12:33323557-33323798 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 13-274 |
| Cow position: | chr12:245753-246011 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 13-284 |
| Cow position: | chr12:3757100-3757367 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 14-174 |
| Cow position: | chr12:27495947-27495787 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 14-249 |
| Cow position: | chr12:16543640-16543861 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 15-229 |
| Cow position: | chr12:35354723-35354511 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 15-256 |
| Cow position: | chr12:25312435-25312677 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 16-186 |
| Cow position: | chr12:35985073-35984901 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 143 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 16-274 |
| Cow position: | chr12:32987635-32987372 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 133 |
| Conread position: | 17-255 |
| Cow position: | chr12:41979364-41979598 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 178 |
| Conread position: | 17-262 |
| Cow position: | chr12:3212262-3212017 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 139 |
| Conread position: | 18-251 |
| Cow position: | chr12:40270159-40270381 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 67 |
| Conread position: | 19-256 |
| Cow position: | chr12:15622513-15622756 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 208 |
| Conread position: | 20-239 |
| Cow position: | chr12:18081619-18081826 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 20-256 |
| Cow position: | chr12:794490-794250 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 20-256 |
| Cow position: | chr12:1223412-1223642 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 57, 136 |
| Conread position: | 20-275 |
| Cow position: | chr12:37993792-37994042 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 21-177 |
| Cow position: | chr12:21861855-21862005 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 21-256 |
| Cow position: | chr12:21829017-21828784 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 97, 51 |
| Conread position: | 24-256 |
| Cow position: | chr12:24440745-24440512 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 135, 8 |
| Conread position: | 25-265 |
| Cow position: | chr12:42254593-42254350 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 132 |
| Conread position: | 26-251 |
| Cow position: | chr12:26868869-26869091 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 28-218 |
| Cow position: | chr12:42282910-42283099 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 32-254 |
| Cow position: | chr12:40158319-40158537 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 33-255 |
| Cow position: | chr12:30688260-30688039 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 38-210 |
| Cow position: | chr12:30064861-30064690 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 43-256 |
| Cow position: | chr12:5135053-5134839 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 60, 56 |
| Conread position: | 48-285 |
| Cow position: | chr12:44832839-44832620 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 49-287 |
| Cow position: | chr12:11498161-11498392 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 171, 19 |
| Conread position: | 58-251 |
| Cow position: | chr12:40824189-40824386 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 60-248 |
| Cow position: | chr12:7131705-7131885 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.