Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-116
Cow position:
Alignm length: 117
Alignm identity: 92
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 5, 54

Conread position: 1-143
Cow position:
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 6, 0

Conread position: 1-175
Cow position:
Alignm length: 175
Alignm identity: 135
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 22, 0

Conread position: 1-184
Cow position:
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 5, 120

Conread position: 1-216
Cow position:
Alignm length: 217
Alignm identity: 171
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 5, 23

Conread position: 1-247
Cow position:
Alignm length: 249
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 5, 51

Conread position: 1-247
Cow position:
Alignm length: 267
Alignm identity: 190
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 71, 237

Conread position: 1-251
Cow position:
Alignm length: 258
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 199

Conread position: 1-255
Cow position:
Alignm length: 258
Alignm identity: 184
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 5, 88

Conread position: 1-271
Cow position:
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 159

Conread position: 2-234
Cow position:
Alignm length: 233
Alignm identity: 172
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 31, 0

Conread position: 2-245
Cow position:
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 128

Conread position: 2-252
Cow position:
Alignm length: 255
Alignm identity: 183
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 5, 30

Conread position: 2-256
Cow position:
Alignm length: 262
Alignm identity: 185
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 137

Conread position: 3-239
Cow position:
Alignm length: 237
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 3-256
Cow position:
Alignm length: 254
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 79, 0

Conread position: 4-163
Cow position:
Alignm length: 162
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 14, 90

Conread position: 4-218
Cow position:
Alignm length: 227
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 149

Conread position: 4-220
Cow position:
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 79, 15

Conread position: 4-251
Cow position:
Alignm length: 249
Alignm identity: 164
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 101, 67

Conread position: 4-251
Cow position:
Alignm length: 253
Alignm identity: 172
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 79, 102

Conread position: 4-255
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 211, 78

Conread position: 4-255
Cow position:
Alignm length: 254
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 45

Conread position: 4-256
Cow position:
Alignm length: 254
Alignm identity: 170
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 144, 78

Conread position: 4-256
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 87

Conread position: 4-256
Cow position:
Alignm length: 256
Alignm identity: 173
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 17

Conread position: 4-256
Cow position:
Alignm length: 254
Alignm identity: 179
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 18

Conread position: 4-257
Cow position:
Alignm length: 257
Alignm identity: 184
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 79, 18

Conread position: 4-263
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 78, 51

Conread position: 4-266
Cow position:
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 4-291
Cow position:
Alignm length: 292
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 159

Conread position: 5-119
Cow position:
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 5-122
Cow position:
Alignm length: 118
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 5-134
Cow position:
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 5-150
Cow position:
Alignm length: 149
Alignm identity: 122
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 22, 95

Conread position: 5-160
Cow position:
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 96

Conread position: 5-178
Cow position:
Alignm length: 176
Alignm identity: 145
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 140, 19

Conread position: 5-180
Cow position:
Alignm length: 178
Alignm identity: 144
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 0

Conread position: 5-201
Cow position:
Alignm length: 199
Alignm identity: 154
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 13, 0

Conread position: 5-240
Cow position:
Alignm length: 239
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 118

Conread position: 5-240
Cow position:
Alignm length: 241
Alignm identity: 176
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 13, 47

Conread position: 5-247
Cow position:
Alignm length: 244
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 222, 14

Conread position: 5-253
Cow position:
Alignm length: 251
Alignm identity: 175
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 54

Conread position: 5-254
Cow position:
Alignm length: 258
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 171

Conread position: 5-255
Cow position:
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 135

Conread position: 5-256
Cow position:
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 5-256
Cow position:
Alignm length: 255
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 49

Conread position: 5-264
Cow position:
Alignm length: 261
Alignm identity: 190
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 12, 61

Conread position: 5-275
Cow position:
Alignm length: 272
Alignm identity: 193
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 17, 66

Conread position: 5-286
Cow position:
Alignm length: 284
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 98, 151

Conread position: 6-218
Cow position:
Alignm length: 214
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 16

Conread position: 6-254
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 6-256
Cow position:
Alignm length: 251
Alignm identity: 184
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 12, 0

Conread position: 6-256
Cow position:
Alignm length: 251
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 19, 0

Conread position: 6-256
Cow position:
Alignm length: 253
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 26

Conread position: 6-265
Cow position:
Alignm length: 265
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 65, 19

Conread position: 7-228
Cow position:
Alignm length: 222
Alignm identity: 159
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 7-246
Cow position:
Alignm length: 243
Alignm identity: 164
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 19

Conread position: 8-247
Cow position:
Alignm length: 241
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 126

Conread position: 8-251
Cow position:
Alignm length: 247
Alignm identity: 181
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 156

Conread position: 8-256
Cow position:
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 149

Conread position: 8-262
Cow position:
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 149

Conread position: 9-206
Cow position:
Alignm length: 198
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 9-213
Cow position:
Alignm length: 209
Alignm identity: 164
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 9, 165

Conread position: 9-218
Cow position:
Alignm length: 211
Alignm identity: 145
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 23

Conread position: 9-234
Cow position:
Alignm length: 229
Alignm identity: 154
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 74, 149

Conread position: 9-256
Cow position:
Alignm length: 249
Alignm identity: 181
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 96, 22

Conread position: 9-257
Cow position:
Alignm length: 250
Alignm identity: 179
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 155, 66

Conread position: 9-267
Cow position:
Alignm length: 261
Alignm identity: 184
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 67, 52

Conread position: 9-270
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 150

Conread position: 9-274
Cow position:
Alignm length: 271
Alignm identity: 192
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 52

Conread position: 9-275
Cow position:
Alignm length: 271
Alignm identity: 194
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 14, 74

Conread position: 9-275
Cow position:
Alignm length: 270
Alignm identity: 189
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 81

Conread position: 9-304
Cow position:
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 131

Conread position: 10-251
Cow position:
Alignm length: 243
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 16

Conread position: 10-256
Cow position:
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 75

Conread position: 10-270
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 76, 21

Conread position: 10-274
Cow position:
Alignm length: 267
Alignm identity: 195
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 93, 72

Conread position: 10-274
Cow position:
Alignm length: 266
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 73

Conread position: 11-241
Cow position:
Alignm length: 234
Alignm identity: 171
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 76

Conread position: 11-275
Cow position:
Alignm length: 270
Alignm identity: 186
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 12, 70

Conread position: 12-212
Cow position:
Alignm length: 203
Alignm identity: 145
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 10, 79

Conread position: 12-256
Cow position:
Alignm length: 247
Alignm identity: 165
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 13

Conread position: 13-173
Cow position:
Alignm length: 164
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 130, 61

Conread position: 13-175
Cow position:
Alignm length: 163
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 13-247
Cow position:
Alignm length: 235
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 13-266
Cow position:
Alignm length: 260
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 70, 91

Conread position: 13-271
Cow position:
Alignm length: 261
Alignm identity: 192
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 70, 19

Conread position: 13-274
Cow position:
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 41

Conread position: 14-128
Cow position:
Alignm length: 116
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 14-218
Cow position:
Alignm length: 213
Alignm identity: 154
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 93

Conread position: 14-234
Cow position:
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 88

Conread position: 14-237
Cow position:
Alignm length: 226
Alignm identity: 158
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 69

Conread position: 14-238
Cow position:
Alignm length: 227
Alignm identity: 175
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 33, 141

Conread position: 14-240
Cow position:
Alignm length: 228
Alignm identity: 178
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 90, 65

Conread position: 14-246
Cow position:
Alignm length: 233
Alignm identity: 176
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 35, 0

Conread position: 14-247
Cow position:
Alignm length: 235
Alignm identity: 178
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 214, 125

Conread position: 14-256
Cow position:
Alignm length: 247
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 91

Conread position: 14-256
Cow position:
Alignm length: 243
Alignm identity: 180
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 65, 0

Conread position: 14-258
Cow position:
Alignm length: 246
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 12

Conread position: 14-315
Cow position:
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 101

Conread position: 15-240
Cow position:
Alignm length: 231
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 103

Conread position: 15-245
Cow position:
Alignm length: 232
Alignm identity: 163
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 90, 9

Conread position: 15-256
Cow position:
Alignm length: 242
Alignm identity: 173
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 0

Conread position: 15-262
Cow position:
Alignm length: 249
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 52

Conread position: 15-274
Cow position:
Alignm length: 263
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 68, 127

Conread position: 15-274
Cow position:
Alignm length: 263
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 10

Conread position: 15-289
Cow position:
Alignm length: 276
Alignm identity: 197
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 242, 106

Conread position: 16-218
Cow position:
Alignm length: 204
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 117

Conread position: 16-251
Cow position:
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 72

Conread position: 16-256
Cow position:
Alignm length: 245
Alignm identity: 174
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 83, 66

Conread position: 16-287
Cow position:
Alignm length: 275
Alignm identity: 190
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 82, 66

Conread position: 17-181
Cow position:
Alignm length: 165
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 17-251
Cow position:
Alignm length: 237
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 159, 9

Conread position: 18-154
Cow position:
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 19-250
Cow position:
Alignm length: 234
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 81

Conread position: 19-251
Cow position:
Alignm length: 235
Alignm identity: 176
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 13, 61

Conread position: 20-256
Cow position:
Alignm length: 241
Alignm identity: 170
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 63, 5

Conread position: 20-305
Cow position:
Alignm length: 288
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 135

Conread position: 21-178
Cow position:
Alignm length: 162
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 32

Conread position: 21-197
Cow position:
Alignm length: 177
Alignm identity: 141
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 21-214
Cow position:
Alignm length: 194
Alignm identity: 146
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 0

Conread position: 21-236
Cow position:
Alignm length: 219
Alignm identity: 148
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 64, 83

Conread position: 21-246
Cow position:
Alignm length: 227
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 62, 72

Conread position: 21-247
Cow position:
Alignm length: 235
Alignm identity: 178
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 63, 129

Conread position: 21-256
Cow position:
Alignm length: 237
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 120

Conread position: 22-194
Cow position:
Alignm length: 183
Alignm identity: 144
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 9, 135

Conread position: 24-229
Cow position:
Alignm length: 208
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 50

Conread position: 27-189
Cow position:
Alignm length: 163
Alignm identity: 134
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 0

Conread position: 28-251
Cow position:
Alignm length: 240
Alignm identity: 183
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 103, 0

Conread position: 29-253
Cow position:
Alignm length: 229
Alignm identity: 178
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 127, 21

Conread position: 29-255
Cow position:
Alignm length: 230
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 154

Conread position: 31-304
Cow position:
Alignm length: 276
Alignm identity: 185
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 139, 182

Conread position: 35-254
Cow position:
Alignm length: 221
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 44

Conread position: 36-245
Cow position:
Alignm length: 212
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 102, 119

Conread position: 58-253
Cow position:
Alignm length: 197
Alignm identity: 151
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 98

Conread position: 58-304
Cow position:
Alignm length: 262
Alignm identity: 193
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 160, 83

Show alignments to all cow chromosomes.