Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-131
Cow position:
Alignm length: 132
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 84

Conread position: 1-205
Cow position:
Alignm length: 205
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 1-213
Cow position:
Alignm length: 214
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 102, 23

Conread position: 1-229
Cow position:
Alignm length: 229
Alignm identity: 175
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 0

Conread position: 1-256
Cow position:
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 129

Conread position: 1-256
Cow position:
Alignm length: 257
Alignm identity: 180
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 14, 43

Conread position: 1-273
Cow position:
Alignm length: 275
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 66

Conread position: 1-275
Cow position:
Alignm length: 278
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 94

Conread position: 1-289
Cow position:
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 98

Conread position: 1-343
Cow position:
Alignm length: 354
Alignm identity: 254
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 121

Conread position: 2-255
Cow position:
Alignm length: 258
Alignm identity: 179
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 91

Conread position: 3-229
Cow position:
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 98

Conread position: 3-240
Cow position:
Alignm length: 240
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 67

Conread position: 3-251
Cow position:
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 133

Conread position: 3-277
Cow position:
Alignm length: 277
Alignm identity: 193
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 204, 16

Conread position: 3-290
Cow position:
Alignm length: 290
Alignm identity: 204
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 255, 39

Conread position: 4-224
Cow position:
Alignm length: 222
Alignm identity: 163
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 212, 85

Conread position: 4-228
Cow position:
Alignm length: 228
Alignm identity: 173
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 100, 38

Conread position: 4-229
Cow position:
Alignm length: 226
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 81, 0

Conread position: 4-236
Cow position:
Alignm length: 234
Alignm identity: 167
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 79, 14

Conread position: 4-240
Cow position:
Alignm length: 242
Alignm identity: 172
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 79, 18

Conread position: 4-240
Cow position:
Alignm length: 238
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 78, 89

Conread position: 4-247
Cow position:
Alignm length: 245
Alignm identity: 184
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 17, 66

Conread position: 4-252
Cow position:
Alignm length: 249
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 4-254
Cow position:
Alignm length: 252
Alignm identity: 183
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 14, 68

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 40

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 79, 21

Conread position: 4-256
Cow position:
Alignm length: 258
Alignm identity: 185
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 88, 18

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 19

Conread position: 4-257
Cow position:
Alignm length: 263
Alignm identity: 189
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 23, 55

Conread position: 4-270
Cow position:
Alignm length: 270
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 95, 19

Conread position: 4-270
Cow position:
Alignm length: 275
Alignm identity: 194
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 20, 57

Conread position: 4-270
Cow position:
Alignm length: 274
Alignm identity: 193
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 59, 14

Conread position: 5-122
Cow position:
Alignm length: 121
Alignm identity: 100
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 5-153
Cow position:
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 95

Conread position: 5-168
Cow position:
Alignm length: 165
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 16, 67

Conread position: 5-198
Cow position:
Alignm length: 195
Alignm identity: 161
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 49

Conread position: 5-199
Cow position:
Alignm length: 196
Alignm identity: 154
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 130, 27

Conread position: 5-199
Cow position:
Alignm length: 196
Alignm identity: 154
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 130, 27

Conread position: 5-225
Cow position:
Alignm length: 226
Alignm identity: 167
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 116, 65

Conread position: 5-238
Cow position:
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 195, 48

Conread position: 5-240
Cow position:
Alignm length: 237
Alignm identity: 181
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 12, 60

Conread position: 5-256
Cow position:
Alignm length: 256
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 49

Conread position: 5-256
Cow position:
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 13

Conread position: 5-256
Cow position:
Alignm length: 256
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 22

Conread position: 5-256
Cow position:
Alignm length: 253
Alignm identity: 176
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 211, 150

Conread position: 5-257
Cow position:
Alignm length: 255
Alignm identity: 186
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 157

Conread position: 5-265
Cow position:
Alignm length: 263
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 14

Conread position: 5-285
Cow position:
Alignm length: 286
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 151

Conread position: 6-240
Cow position:
Alignm length: 236
Alignm identity: 168
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 183, 25

Conread position: 6-256
Cow position:
Alignm length: 252
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 7-239
Cow position:
Alignm length: 236
Alignm identity: 181
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 95, 16

Conread position: 8-117
Cow position:
Alignm length: 112
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 8-192
Cow position:
Alignm length: 186
Alignm identity: 148
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 8, 42

Conread position: 8-247
Cow position:
Alignm length: 244
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 8-250
Cow position:
Alignm length: 245
Alignm identity: 168
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 145

Conread position: 8-251
Cow position:
Alignm length: 244
Alignm identity: 188
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 62, 0

Conread position: 8-255
Cow position:
Alignm length: 261
Alignm identity: 195
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 136, 46

Conread position: 8-255
Cow position:
Alignm length: 248
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 8-256
Cow position:
Alignm length: 249
Alignm identity: 181
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 0

Conread position: 8-268
Cow position:
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 75

Conread position: 8-289
Cow position:
Alignm length: 284
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 72

Conread position: 8-306
Cow position:
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 57

Conread position: 9-199
Cow position:
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 17

Conread position: 9-213
Cow position:
Alignm length: 206
Alignm identity: 144
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 82, 15

Conread position: 9-217
Cow position:
Alignm length: 210
Alignm identity: 165
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 86, 20

Conread position: 9-231
Cow position:
Alignm length: 225
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 74, 163

Conread position: 9-250
Cow position:
Alignm length: 243
Alignm identity: 167
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 76

Conread position: 9-255
Cow position:
Alignm length: 248
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 9-256
Cow position:
Alignm length: 251
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 76, 95

Conread position: 9-256
Cow position:
Alignm length: 249
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 147

Conread position: 9-262
Cow position:
Alignm length: 258
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 15

Conread position: 9-270
Cow position:
Alignm length: 275
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 157

Conread position: 9-274
Cow position:
Alignm length: 270
Alignm identity: 195
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 66, 22

Conread position: 9-289
Cow position:
Alignm length: 283
Alignm identity: 201
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 53

Conread position: 10-130
Cow position:
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 10-152
Cow position:
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 110, 0

Conread position: 10-201
Cow position:
Alignm length: 193
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 13

Conread position: 10-210
Cow position:
Alignm length: 201
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 10-247
Cow position:
Alignm length: 239
Alignm identity: 171
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 21

Conread position: 10-251
Cow position:
Alignm length: 246
Alignm identity: 180
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 73, 0

Conread position: 10-256
Cow position:
Alignm length: 251
Alignm identity: 187
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 7, 16

Conread position: 10-262
Cow position:
Alignm length: 253
Alignm identity: 190
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 13, 0

Conread position: 10-262
Cow position:
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 210, 69

Conread position: 11-235
Cow position:
Alignm length: 228
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 146

Conread position: 12-157
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 12-229
Cow position:
Alignm length: 220
Alignm identity: 155
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 84, 70

Conread position: 12-251
Cow position:
Alignm length: 240
Alignm identity: 169
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 70, 0

Conread position: 12-251
Cow position:
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 13

Conread position: 12-255
Cow position:
Alignm length: 245
Alignm identity: 179
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 63, 130

Conread position: 12-256
Cow position:
Alignm length: 246
Alignm identity: 174
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 64, 93

Conread position: 12-256
Cow position:
Alignm length: 247
Alignm identity: 172
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 72

Conread position: 12-256
Cow position:
Alignm length: 250
Alignm identity: 186
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 93

Conread position: 12-287
Cow position:
Alignm length: 277
Alignm identity: 192
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 91, 13

Conread position: 12-290
Cow position:
Alignm length: 281
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 79

Conread position: 13-143
Cow position:
Alignm length: 136
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 66, 53

Conread position: 13-213
Cow position:
Alignm length: 202
Alignm identity: 139
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 69, 17

Conread position: 13-262
Cow position:
Alignm length: 251
Alignm identity: 182
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 245, 71

Conread position: 13-305
Cow position:
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 73

Conread position: 13-306
Cow position:
Alignm length: 303
Alignm identity: 209
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 90, 18

Conread position: 14-247
Cow position:
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 148

Conread position: 14-247
Cow position:
Alignm length: 234
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 14-250
Cow position:
Alignm length: 238
Alignm identity: 167
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 93, 68

Conread position: 14-251
Cow position:
Alignm length: 241
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 58

Conread position: 14-255
Cow position:
Alignm length: 242
Alignm identity: 163
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 14-256
Cow position:
Alignm length: 245
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 81, 47

Conread position: 14-256
Cow position:
Alignm length: 244
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 141

Conread position: 15-246
Cow position:
Alignm length: 233
Alignm identity: 166
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 8, 57

Conread position: 16-198
Cow position:
Alignm length: 184
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 72

Conread position: 16-229
Cow position:
Alignm length: 219
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 33

Conread position: 16-252
Cow position:
Alignm length: 241
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 6, 31

Conread position: 16-256
Cow position:
Alignm length: 243
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 141

Conread position: 16-257
Cow position:
Alignm length: 245
Alignm identity: 180
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 11, 78

Conread position: 16-289
Cow position:
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 131

Conread position: 17-241
Cow position:
Alignm length: 228
Alignm identity: 167
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 203, 65

Conread position: 17-254
Cow position:
Alignm length: 240
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 70, 15

Conread position: 18-246
Cow position:
Alignm length: 235
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 143

Conread position: 18-247
Cow position:
Alignm length: 232
Alignm identity: 178
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 172, 30

Conread position: 19-175
Cow position:
Alignm length: 159
Alignm identity: 128
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 16, 57

Conread position: 19-229
Cow position:
Alignm length: 212
Alignm identity: 167
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 167, 134

Conread position: 19-247
Cow position:
Alignm length: 230
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 165, 60

Conread position: 19-256
Cow position:
Alignm length: 238
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 19-261
Cow position:
Alignm length: 244
Alignm identity: 167
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 239, 0

Conread position: 20-256
Cow position:
Alignm length: 238
Alignm identity: 178
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 206, 62

Conread position: 20-256
Cow position:
Alignm length: 237
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 44, 0

Conread position: 20-266
Cow position:
Alignm length: 256
Alignm identity: 172
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 71, 22

Conread position: 20-286
Cow position:
Alignm length: 268
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 254, 111

Conread position: 21-210
Cow position:
Alignm length: 197
Alignm identity: 155
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 84, 58

Conread position: 21-247
Cow position:
Alignm length: 228
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 122, 10

Conread position: 21-256
Cow position:
Alignm length: 236
Alignm identity: 173
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 21-256
Cow position:
Alignm length: 236
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 66, 0

Conread position: 23-251
Cow position:
Alignm length: 232
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 60, 81

Conread position: 23-251
Cow position:
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 212

Conread position: 24-282
Cow position:
Alignm length: 262
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 234, 55

Conread position: 25-251
Cow position:
Alignm length: 227
Alignm identity: 162
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 28-273
Cow position:
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 50

Conread position: 28-274
Cow position:
Alignm length: 250
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 27

Conread position: 30-251
Cow position:
Alignm length: 222
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 30-268
Cow position:
Alignm length: 242
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 126

Conread position: 36-304
Cow position:
Alignm length: 269
Alignm identity: 190
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 119, 0

Conread position: 37-251
Cow position:
Alignm length: 215
Alignm identity: 162
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 39-256
Cow position:
Alignm length: 224
Alignm identity: 167
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 30, 161

Conread position: 44-247
Cow position:
Alignm length: 204
Alignm identity: 155
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 54-161
Cow position:
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.