Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-190
Cow position: chr18:6157872-6157694 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 5, 91

Conread position: 1-250
Cow position: chr18:7322694-7322445 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 5, 55

Conread position: 1-251
Cow position: chr18:31724922-31725173 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 81

Conread position: 1-255
Cow position: chr18:23652666-23652906 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 5, 91

Conread position: 1-256
Cow position: chr18:16726605-16726351 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 80

Conread position: 1-256
Cow position: chr18:55697065-55697309 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 41

Conread position: 1-316
Cow position: chr18:50566830-50566523 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 75

Conread position: 2-208
Cow position: chr18:34021342-34021144 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 42

Conread position: 2-251
Cow position: chr18:50993317-50993559 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 0

Conread position: 2-256
Cow position: chr18:51500122-51500376 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 153, 38

Conread position: 2-289
Cow position: chr18:10101445-10101166 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 57

Conread position: 3-256
Cow position: chr18:45104490-45104740 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 21, 83

Conread position: 4-136
Cow position: chr18:23487979-23487847 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 4-174
Cow position: chr18:306113-306276 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 4-189
Cow position: chr18:36123492-36123306 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 151
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 71, 112

Conread position: 4-198
Cow position: chr18:51587592-51587781 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 19

Conread position: 4-221
Cow position: chr18:19363889-19363673 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 155

Conread position: 4-237
Cow position: chr18:9806371-9806135 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 4-256
Cow position: chr18:329323-329567 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 22, 96

Conread position: 4-256
Cow position: chr18:40759157-40758922 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 4-256
Cow position: chr18:56159412-56159171 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 95, 19

Conread position: 4-270
Cow position: chr18:16842110-16842374 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 87

Conread position: 5-153
Cow position: chr18:35749029-35749172 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 70, 48

Conread position: 5-192
Cow position: chr18:23714934-23715119 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 13, 116

Conread position: 5-200
Cow position: chr18:24855894-24856083 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 5-247
Cow position: chr18:36098154-36097916 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 83, 14

Conread position: 5-247
Cow position: chr18:36478152-36477913 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 12, 107

Conread position: 5-247
Cow position: chr18:51412320-51412089 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 188, 18

Conread position: 5-251
Cow position: chr18:29768867-29768625 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 13

Conread position: 5-256
Cow position: chr18:40202855-40203093 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 13, 87

Conread position: 5-259
Cow position: chr18:33299851-33299601 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 26

Conread position: 5-262
Cow position: chr18:22874823-22874572 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 26

Conread position: 5-270
Cow position: chr18:39185561-39185302 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 150

Conread position: 5-288
Cow position: chr18:21176139-21175857 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 250

Conread position: 6-153
Cow position: chr18:21930383-21930531 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 131

Conread position: 6-238
Cow position: chr18:46436813-46437029 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 220, 74

Conread position: 6-256
Cow position: chr18:2592219-2592467 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 77, 16

Conread position: 6-256
Cow position: chr18:21682030-21682264 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 19, 45

Conread position: 6-256
Cow position: chr18:22214432-22214192 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 67, 97

Conread position: 7-256
Cow position: chr18:3158652-3158895 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 149, 0

Conread position: 7-256
Cow position: chr18:26535561-26535810 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 89, 147

Conread position: 7-256
Cow position: chr18:43463459-43463701 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 11

Conread position: 7-256
Cow position: chr18:52635129-52635375 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 79, 160

Conread position: 8-227
Cow position: chr18:5571110-5570887 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 8-240
Cow position: chr18:34325004-34325236 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 224

Conread position: 8-251
Cow position: chr18:51298429-51298192 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 149

Conread position: 8-252
Cow position: chr18:38344754-38344514 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 143, 73

Conread position: 8-264
Cow position: chr18:23424868-23424625 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 230, 79

Conread position: 8-272
Cow position: chr18:50700629-50700356 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 259

Conread position: 9-246
Cow position: chr18:35797572-35797341 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 9-247
Cow position: chr18:33157763-33157536 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 108, 10

Conread position: 9-264
Cow position: chr18:4515976-4515726 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 44

Conread position: 9-287
Cow position: chr18:48290494-48290763 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 101, 62

Conread position: 9-288
Cow position: chr18:25970686-25970957 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 10, 77

Conread position: 10-206
Cow position: chr18:37382144-37382342 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 74

Conread position: 10-251
Cow position: chr18:35636401-35636639 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 158
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 10-251
Cow position: chr18:48036724-48036492 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 52

Conread position: 10-269
Cow position: chr18:4316256-4315999 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 15

Conread position: 11-218
Cow position: chr18:22411668-22411873 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 72

Conread position: 12-240
Cow position: chr18:4668552-4668772 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 62

Conread position: 12-256
Cow position: chr18:16227509-16227267 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 60

Conread position: 12-256
Cow position: chr18:21195400-21195633 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 216, 75

Conread position: 12-256
Cow position: chr18:28085516-28085281 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 72, 13

Conread position: 13-248
Cow position: chr18:4040122-4039893 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 13, 0

Conread position: 13-256
Cow position: chr18:29356683-29356923 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 90, 69

Conread position: 13-262
Cow position: chr18:39662723-39662484 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 80

Conread position: 14-119
Cow position: chr18:24364103-24364208 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 14-134
Cow position: chr18:37745752-37745628 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 14-218
Cow position: chr18:23360577-23360373 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 117

Conread position: 14-246
Cow position: chr18:26937666-26937448 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 14-255
Cow position: chr18:17334469-17334710 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 144

Conread position: 15-210
Cow position: chr18:26355083-26355281 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 145

Conread position: 15-263
Cow position: chr18:45961325-45961559 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 15, 58

Conread position: 16-229
Cow position: chr18:29796484-29796692 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 175, 66

Conread position: 16-256
Cow position: chr18:6609917-6610152 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 85, 126

Conread position: 17-247
Cow position: chr18:31562454-31562675 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 95

Conread position: 17-256
Cow position: chr18:19159032-19159258 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 17-264
Cow position: chr18:23807933-23808174 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 66, 76

Conread position: 19-256
Cow position: chr18:22120943-22121176 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 19-274
Cow position: chr18:21939300-21939040 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 10, 141

Conread position: 20-256
Cow position: chr18:56150713-56150950 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 83, 59

Conread position: 21-229
Cow position: chr18:4765342-4765540 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 165, 61

Conread position: 21-256
Cow position: chr18:13360000-13359768 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 61

Conread position: 21-268
Cow position: chr18:33275242-33275002 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 9

Conread position: 21-274
Cow position: chr18:17324653-17324398 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 238

Conread position: 23-246
Cow position: chr18:4578534-4578753 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 68, 0

Conread position: 27-218
Cow position: chr18:17669872-17670058 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 28-256
Cow position: chr18:50224308-50224532 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 7

Conread position: 31-255
Cow position: chr18:11233359-11233138 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 65

Conread position: 32-255
Cow position: chr18:47314364-47314587 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 63

Conread position: 53-216
Cow position: chr18:45720411-45720249 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 5

Show alignments to all cow chromosomes.