Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-185
Cow position: chr19:15936814-15936635 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 23

Conread position: 1-234
Cow position: chr19:36976934-36977167 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 161

Conread position: 1-237
Cow position: chr19:6880897-6881132 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 122

Conread position: 1-246
Cow position: chr19:2342460-2342213 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 1-246
Cow position: chr19:7029894-7029655 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 101, 50

Conread position: 1-247
Cow position: chr19:25637517-25637763 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 80

Conread position: 1-251
Cow position: chr19:33281335-33281103 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 5, 51

Conread position: 1-256
Cow position: chr19:19673393-19673146 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 156

Conread position: 1-289
Cow position: chr19:9703859-9704137 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 98

Conread position: 2-277
Cow position: chr19:31827074-31826817 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 4-244
Cow position: chr19:18242452-18242682 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 96

Conread position: 4-247
Cow position: chr19:19924626-19924860 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 4-251
Cow position: chr19:42694968-42694720 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 14, 97

Conread position: 4-254
Cow position: chr19:31595273-31595028 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 77, 21

Conread position: 4-262
Cow position: chr19:7637263-7637516 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 79

Conread position: 4-314
Cow position: chr19:34166343-34166010 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 85, 281

Conread position: 5-154
Cow position: chr19:1402834-1402982 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 125
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 13, 36

Conread position: 5-251
Cow position: chr19:53738309-53738067 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 5-256
Cow position: chr19:9387609-9387361 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 0

Conread position: 5-264
Cow position: chr19:19662019-19661760 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 94

Conread position: 5-297
Cow position: chr19:36461557-36461843 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 62

Conread position: 5-318
Cow position: chr19:33306282-33305972 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 0

Conread position: 6-256
Cow position: chr19:15887352-15887595 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 83, 0

Conread position: 6-270
Cow position: chr19:30746377-30746115 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 177, 150

Conread position: 7-255
Cow position: chr19:6516237-6515989 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 69, 25

Conread position: 8-189
Cow position: chr19:31614080-31613905 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 146
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 23

Conread position: 8-201
Cow position: chr19:27346680-27346857 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 8-239
Cow position: chr19:31381023-31381252 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 52

Conread position: 8-248
Cow position: chr19:48478950-48478704 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 8-250
Cow position: chr19:16694069-16694314 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 9, 96

Conread position: 8-262
Cow position: chr19:4252003-4252252 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 250, 17

Conread position: 9-154
Cow position: chr19:25271446-25271591 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 9-217
Cow position: chr19:39986574-39986776 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 145

Conread position: 9-246
Cow position: chr19:47671721-47671489 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 64

Conread position: 9-251
Cow position: chr19:2260163-2260393 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 56, 16

Conread position: 9-251
Cow position: chr19:2771043-2771275 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 9-251
Cow position: chr19:14928686-14928938 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 74, 84

Conread position: 9-255
Cow position: chr19:33912657-33912905 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 95

Conread position: 9-256
Cow position: chr19:729775-730003 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 9-256
Cow position: chr19:29627409-29627647 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 18, 77

Conread position: 9-271
Cow position: chr19:10171973-10171711 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 96

Conread position: 9-275
Cow position: chr19:37562036-37562284 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 62

Conread position: 10-142
Cow position: chr19:56126226-56126095 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 10-216
Cow position: chr19:1713174-1713376 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 166
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 8, 35

Conread position: 10-262
Cow position: chr19:55236458-55236213 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 45

Conread position: 10-278
Cow position: chr19:36478864-36478602 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 16, 57

Conread position: 11-232
Cow position: chr19:30052039-30052249 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 125

Conread position: 12-247
Cow position: chr19:56018556-56018787 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 13, 61

Conread position: 12-255
Cow position: chr19:6688031-6688277 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 71, 0

Conread position: 12-260
Cow position: chr19:44490062-44489815 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 13-203
Cow position: chr19:24137228-24137038 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 12, 70

Conread position: 13-229
Cow position: chr19:43035208-43034996 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 66

Conread position: 13-247
Cow position: chr19:35782166-35782396 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 13-274
Cow position: chr19:2734416-2734158 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 214, 69

Conread position: 13-288
Cow position: chr19:30436197-30435918 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 12

Conread position: 13-349
Cow position: chr19:33882206-33882516 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 14-130
Cow position: chr19:42273882-42273998 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 14-199
Cow position: chr19:56156219-56156037 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 14-210
Cow position: chr19:47479654-47479852 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 93, 50

Conread position: 14-240
Cow position: chr19:22863696-22863919 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 22

Conread position: 14-251
Cow position: chr19:41212085-41212320 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 144

Conread position: 14-256
Cow position: chr19:35540262-35540031 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 106

Conread position: 14-288
Cow position: chr19:35064225-35064490 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 40, 126

Conread position: 15-175
Cow position: chr19:22168481-22168322 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 11, 0

Conread position: 15-240
Cow position: chr19:51185387-51185169 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 214, 10

Conread position: 15-244
Cow position: chr19:2138141-2138366 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 68, 89

Conread position: 15-251
Cow position: chr19:1901033-1901269 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 56

Conread position: 15-251
Cow position: chr19:21285110-21285353 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 8, 0

Conread position: 15-275
Cow position: chr19:48722992-48722734 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 9

Conread position: 16-148
Cow position: chr19:33260993-33260859 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 59, 34

Conread position: 16-153
Cow position: chr19:51536530-51536393 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 63

Conread position: 17-139
Cow position: chr19:5279830-5279705 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 107
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 87, 0

Conread position: 18-256
Cow position: chr19:20661451-20661690 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 45, 65

Conread position: 19-177
Cow position: chr19:15796629-15796474 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 134
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 11, 34

Conread position: 19-255
Cow position: chr19:39876560-39876788 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 37

Conread position: 20-247
Cow position: chr19:25711358-25711594 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 9, 0

Conread position: 20-256
Cow position: chr19:33932190-33932414 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 20-264
Cow position: chr19:471994-471741 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 76

Conread position: 21-247
Cow position: chr19:43517190-43516972 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 22-256
Cow position: chr19:39751435-39751208 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 22-268
Cow position: chr19:36380200-36379964 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 49, 0

Conread position: 24-159
Cow position: chr19:22668188-22668054 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 117, 0

Conread position: 24-246
Cow position: chr19:32989445-32989654 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 148, 41

Conread position: 24-256
Cow position: chr19:31395939-31396163 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 60, 0

Conread position: 25-262
Cow position: chr19:48409464-48409238 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 232, 57

Conread position: 28-274
Cow position: chr19:18788153-18788395 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 127

Conread position: 74-203
Cow position: chr19:11147614-11147742 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 106, 0

Show alignments to all cow chromosomes.