Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-163
Cow position: chr20:26083947-26084110 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 26, 71

Conread position: 1-251
Cow position: chr20:4909048-4908791 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 15, 221

Conread position: 1-268
Cow position: chr20:20557618-20557886 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 56

Conread position: 1-275
Cow position: chr20:28888934-28888653 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 5, 23

Conread position: 1-289
Cow position: chr20:15073803-15074088 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 98

Conread position: 1-292
Cow position: chr20:5576806-5576514 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 5, 146

Conread position: 2-273
Cow position: chr20:17845987-17845725 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 3-230
Cow position: chr20:14471516-14471742 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 3-256
Cow position: chr20:12581927-12582166 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 81

Conread position: 3-256
Cow position: chr20:21345456-21345187 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 16

Conread position: 4-151
Cow position: chr20:23235064-23234917 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 4-180
Cow position: chr20:16585606-16585781 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 89, 18

Conread position: 4-187
Cow position: chr20:24234184-24234010 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 117, 44

Conread position: 4-207
Cow position: chr20:3321110-3321308 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 81

Conread position: 4-236
Cow position: chr20:20359756-20359974 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 83, 0

Conread position: 4-247
Cow position: chr20:32861970-32862202 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 59, 0

Conread position: 4-254
Cow position: chr20:9473586-9473831 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 118, 81

Conread position: 4-255
Cow position: chr20:13821552-13821800 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 16, 211

Conread position: 4-274
Cow position: chr20:7659191-7659449 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 236, 19

Conread position: 4-275
Cow position: chr20:20471810-20471550 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 220, 75

Conread position: 4-279
Cow position: chr20:22704321-22704048 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 17, 83

Conread position: 5-106
Cow position: chr20:7062410-7062308 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 5-161
Cow position: chr20:6045403-6045549 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 50

Conread position: 5-172
Cow position: chr20:11355245-11355078 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 157, 115

Conread position: 5-178
Cow position: chr20:8261937-8261766 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 14, 49

Conread position: 5-239
Cow position: chr20:10759447-10759667 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 67

Conread position: 5-245
Cow position: chr20:4621318-4621547 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 94, 8

Conread position: 5-248
Cow position: chr20:27001419-27001183 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 72, 14

Conread position: 5-255
Cow position: chr20:26077108-26076867 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 5-264
Cow position: chr20:14831587-14831839 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 56

Conread position: 5-277
Cow position: chr20:4204319-4204056 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 50

Conread position: 5-289
Cow position: chr20:14679648-14679363 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 146

Conread position: 6-246
Cow position: chr20:33177218-33176973 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 11, 134

Conread position: 6-256
Cow position: chr20:26880882-26881132 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 140

Conread position: 7-136
Cow position: chr20:15918008-15917879 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 73

Conread position: 7-255
Cow position: chr20:18413880-18413639 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 8-118
Cow position: chr20:23604887-23604995 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 7, 64

Conread position: 8-217
Cow position: chr20:25274264-25274459 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 10, 84

Conread position: 8-251
Cow position: chr20:6571352-6571118 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 8-251
Cow position: chr20:13048390-13048632 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 8-252
Cow position: chr20:13956069-13955826 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 50, 99

Conread position: 9-196
Cow position: chr20:18837134-18837320 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 142, 15

Conread position: 9-247
Cow position: chr20:34597076-34597318 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 74

Conread position: 9-250
Cow position: chr20:12041125-12041359 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 46

Conread position: 9-251
Cow position: chr20:28296315-28296076 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 84

Conread position: 9-256
Cow position: chr20:26996556-26996315 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 74, 14

Conread position: 9-258
Cow position: chr20:23936384-23936637 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 211

Conread position: 9-264
Cow position: chr20:27977684-27977938 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 66, 75

Conread position: 10-158
Cow position: chr20:37609253-37609106 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 10-229
Cow position: chr20:28067404-28067618 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 34, 44

Conread position: 10-251
Cow position: chr20:9537160-9536920 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 14, 95

Conread position: 10-251
Cow position: chr20:32153526-32153297 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 10-255
Cow position: chr20:17670204-17669964 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 41

Conread position: 10-256
Cow position: chr20:33435144-33435384 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 123

Conread position: 10-275
Cow position: chr20:8556248-8556515 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 73, 83

Conread position: 11-143
Cow position: chr20:39056020-39056152 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 11-235
Cow position: chr20:20739265-20739487 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 126

Conread position: 11-240
Cow position: chr20:24869014-24869231 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 0

Conread position: 11-256
Cow position: chr20:21019587-21019346 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 145

Conread position: 11-265
Cow position: chr20:31746607-31746850 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 13, 21

Conread position: 12-241
Cow position: chr20:15565805-15566035 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 70

Conread position: 13-210
Cow position: chr20:24391999-24391807 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 13-218
Cow position: chr20:25293612-25293413 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 93, 53

Conread position: 13-246
Cow position: chr20:7182654-7182885 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 13-251
Cow position: chr20:6240501-6240743 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 70

Conread position: 13-256
Cow position: chr20:38123910-38123668 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 13, 92

Conread position: 13-275
Cow position: chr20:8020917-8020657 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 62, 0

Conread position: 14-179
Cow position: chr20:34178453-34178624 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 14-180
Cow position: chr20:19339854-19340010 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 127, 0

Conread position: 14-218
Cow position: chr20:38027992-38028188 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 8, 65

Conread position: 14-262
Cow position: chr20:25686332-25686578 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 233, 40

Conread position: 14-275
Cow position: chr20:35897537-35897279 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 243, 139

Conread position: 14-305
Cow position: chr20:25823301-25823013 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 17

Conread position: 15-275
Cow position: chr20:220637-220381 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 14

Conread position: 16-250
Cow position: chr20:38872988-38873225 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 80

Conread position: 16-256
Cow position: chr20:15069157-15068925 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 16-256
Cow position: chr20:18491190-18490968 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 32, 0

Conread position: 16-258
Cow position: chr20:15576871-15577112 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 130

Conread position: 17-249
Cow position: chr20:20984013-20983795 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 9, 66

Conread position: 17-287
Cow position: chr20:29632985-29633242 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 82, 53

Conread position: 17-353
Cow position: chr20:29308484-29308824 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 18-144
Cow position: chr20:12676460-12676333 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 10, 122

Conread position: 18-240
Cow position: chr20:15235783-15235561 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 191, 64

Conread position: 18-247
Cow position: chr20:7442113-7442334 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 204, 64

Conread position: 18-256
Cow position: chr20:5104428-5104653 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 64, 13

Conread position: 18-256
Cow position: chr20:19328418-19328181 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 107

Conread position: 19-251
Cow position: chr20:14735689-14735463 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 66, 0

Conread position: 19-251
Cow position: chr20:17733761-17733987 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 66, 84

Conread position: 19-256
Cow position: chr20:41500525-41500762 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 205

Conread position: 20-247
Cow position: chr20:19238416-19238641 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 67, 0

Conread position: 20-256
Cow position: chr20:22445625-22445853 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 22-212
Cow position: chr20:614677-614490 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 68, 121

Conread position: 23-253
Cow position: chr20:19266164-19265941 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 68, 0

Conread position: 24-240
Cow position: chr20:33178512-33178729 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 42

Conread position: 25-256
Cow position: chr20:19146882-19146651 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 58, 78

Conread position: 38-207
Cow position: chr20:12362871-12363033 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 140
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 91, 17

Conread position: 62-256
Cow position: chr20:3892012-3891825 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 70, 0

Conread position: 74-255
Cow position: chr20:32667953-32667772 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 96, 153

Show alignments to all cow chromosomes.