Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-150
Cow position: chr22:13057709-13057861 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 1-168
Cow position: chr22:33386520-33386685 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 5, 99

Conread position: 1-247
Cow position: chr22:6566661-6566899 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 158, 0

Conread position: 1-247
Cow position: chr22:35520271-35520519 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 1-249
Cow position: chr22:44924073-44924320 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 73

Conread position: 2-247
Cow position: chr22:45355363-45355130 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 77, 0

Conread position: 2-256
Cow position: chr22:27818989-27818738 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 105

Conread position: 3-251
Cow position: chr22:27514649-27514404 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 16

Conread position: 3-263
Cow position: chr22:11257762-11258009 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 50

Conread position: 4-229
Cow position: chr22:25714986-25714772 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 16, 48

Conread position: 4-232
Cow position: chr22:23403666-23403882 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 77, 98

Conread position: 4-236
Cow position: chr22:37554640-37554873 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 85

Conread position: 4-246
Cow position: chr22:28179838-28179588 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 145

Conread position: 4-247
Cow position: chr22:13187862-13187616 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 11, 58

Conread position: 4-247
Cow position: chr22:19787697-19787935 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 79

Conread position: 4-247
Cow position: chr22:23861166-23861399 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 4-247
Cow position: chr22:30269392-30269159 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 78

Conread position: 4-255
Cow position: chr22:26490443-26490197 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 75

Conread position: 4-256
Cow position: chr22:16044436-16044694 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 72

Conread position: 4-270
Cow position: chr22:44180573-44180314 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 254, 75

Conread position: 4-274
Cow position: chr22:39303018-39303290 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 22, 183

Conread position: 4-277
Cow position: chr22:23009956-23010218 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 15, 95

Conread position: 5-107
Cow position: chr22:24071909-24072011 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-148
Cow position: chr22:139321-139465 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 5-183
Cow position: chr22:9466593-9466423 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 136

Conread position: 5-248
Cow position: chr22:23618318-23618559 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 210

Conread position: 5-251
Cow position: chr22:7518403-7518156 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 101

Conread position: 5-274
Cow position: chr22:11745924-11746190 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 14, 94

Conread position: 6-233
Cow position: chr22:5467384-5467611 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 139

Conread position: 6-236
Cow position: chr22:11778629-11778859 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 226

Conread position: 6-255
Cow position: chr22:28071535-28071290 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 125, 18

Conread position: 6-256
Cow position: chr22:33422136-33422385 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 181
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 66, 13

Conread position: 7-245
Cow position: chr22:26941770-26941544 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 68, 41

Conread position: 7-247
Cow position: chr22:19653006-19653237 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 72, 0

Conread position: 7-274
Cow position: chr22:26057357-26057107 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 251, 31

Conread position: 8-184
Cow position: chr22:15358222-15358043 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 34

Conread position: 8-214
Cow position: chr22:33917919-33918122 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 115

Conread position: 8-221
Cow position: chr22:15666189-15665984 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 207, 133

Conread position: 8-226
Cow position: chr22:14118957-14118739 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-233
Cow position: chr22:29441281-29441500 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 47

Conread position: 8-239
Cow position: chr22:25221920-25222149 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 26, 76

Conread position: 8-250
Cow position: chr22:27224104-27223874 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 90, 0

Conread position: 8-251
Cow position: chr22:1407-1170 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 11, 92

Conread position: 8-272
Cow position: chr22:13235517-13235264 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 212, 133

Conread position: 8-274
Cow position: chr22:35382269-35382533 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 154

Conread position: 8-309
Cow position: chr22:7979685-7979401 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 65

Conread position: 9-250
Cow position: chr22:1975589-1975353 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 9-251
Cow position: chr22:11697219-11697469 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 17

Conread position: 9-256
Cow position: chr22:29290163-29290401 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 63

Conread position: 9-264
Cow position: chr22:864540-864792 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 79

Conread position: 9-270
Cow position: chr22:40374584-40374327 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 14

Conread position: 9-272
Cow position: chr22:6215581-6215835 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 16, 71

Conread position: 9-319
Cow position: chr22:15090717-15090415 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 73, 26

Conread position: 10-201
Cow position: chr22:23580865-23581046 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 8, 21

Conread position: 10-218
Cow position: chr22:1289539-1289746 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 84

Conread position: 10-236
Cow position: chr22:13841113-13840893 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 94, 64

Conread position: 10-256
Cow position: chr22:41044934-41045179 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 161
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 73

Conread position: 10-288
Cow position: chr22:40048530-40048265 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 16, 73

Conread position: 11-158
Cow position: chr22:41684312-41684456 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 64, 33

Conread position: 11-231
Cow position: chr22:20687279-20687053 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 108

Conread position: 11-247
Cow position: chr22:15428474-15428697 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 15, 0

Conread position: 11-251
Cow position: chr22:31592884-31593121 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 12

Conread position: 11-253
Cow position: chr22:10631359-10631113 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 95

Conread position: 12-236
Cow position: chr22:39293774-39293992 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 0

Conread position: 12-238
Cow position: chr22:25629788-25630020 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 70

Conread position: 12-240
Cow position: chr22:16621151-16620924 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 71

Conread position: 12-251
Cow position: chr22:7153860-7153629 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 208, 70

Conread position: 12-274
Cow position: chr22:44835621-44835359 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 123

Conread position: 13-250
Cow position: chr22:25783952-25784182 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 91, 10

Conread position: 13-251
Cow position: chr22:19592396-19592154 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 131

Conread position: 14-187
Cow position: chr22:4028785-4028610 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 97

Conread position: 14-199
Cow position: chr22:17125556-17125374 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 47

Conread position: 14-216
Cow position: chr22:19040395-19040594 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 9, 0

Conread position: 14-242
Cow position: chr22:39452570-39452337 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 14-247
Cow position: chr22:7301859-7302101 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 13, 0

Conread position: 14-254
Cow position: chr22:22860936-22861174 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 8, 66

Conread position: 14-266
Cow position: chr22:19738600-19738858 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 14-306
Cow position: chr22:4651153-4650868 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 85

Conread position: 15-229
Cow position: chr22:16533049-16532842 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 62

Conread position: 15-256
Cow position: chr22:31497134-31497368 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 50, 0

Conread position: 15-272
Cow position: chr22:13274453-13274192 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 34, 136

Conread position: 16-262
Cow position: chr22:16251595-16251835 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 242, 66

Conread position: 17-236
Cow position: chr22:4161642-4161857 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 111, 76

Conread position: 17-236
Cow position: chr22:42605599-42605387 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 89, 124

Conread position: 17-256
Cow position: chr22:6622274-6622510 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 5, 66

Conread position: 17-256
Cow position: chr22:46567918-46568154 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 6, 66

Conread position: 19-251
Cow position: chr22:10683695-10683925 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 19-255
Cow position: chr22:12681834-12682056 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 61

Conread position: 19-256
Cow position: chr22:5042285-5042054 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 159
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 188, 63

Conread position: 20-249
Cow position: chr22:27581405-27581191 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 63, 84

Conread position: 20-256
Cow position: chr22:2476244-2476474 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 20-256
Cow position: chr22:9155399-9155634 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 167, 52

Conread position: 20-256
Cow position: chr22:34726642-34726409 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 61

Conread position: 21-209
Cow position: chr22:19207940-19207751 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 124, 22

Conread position: 22-237
Cow position: chr22:27791430-27791219 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 156, 52

Conread position: 22-263
Cow position: chr22:32221608-32221391 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 188
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 130, 0

Conread position: 24-256
Cow position: chr22:26080928-26081165 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 25-257
Cow position: chr22:30515213-30514989 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 58, 68

Conread position: 27-256
Cow position: chr22:1590982-1590754 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 52

Conread position: 29-256
Cow position: chr22:42933523-42933753 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 31-256
Cow position: chr22:11500736-11500517 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 62

Conread position: 36-218
Cow position: chr22:15623274-15623091 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 153
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 68, 7

Conread position: 39-286
Cow position: chr22:45291285-45291036 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 210, 0

Show alignments to all cow chromosomes.