Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-150
Cow position:
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 1-168
Cow position:
Alignm length: 170
Alignm identity: 133
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 5, 99

Conread position: 1-247
Cow position:
Alignm length: 247
Alignm identity: 177
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 158, 0

Conread position: 1-247
Cow position:
Alignm length: 249
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 1-249
Cow position:
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 73

Conread position: 2-247
Cow position:
Alignm length: 246
Alignm identity: 186
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 77, 0

Conread position: 2-256
Cow position:
Alignm length: 261
Alignm identity: 179
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 105

Conread position: 3-251
Cow position:
Alignm length: 251
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 16

Conread position: 3-263
Cow position:
Alignm length: 264
Alignm identity: 192
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 50

Conread position: 4-229
Cow position:
Alignm length: 227
Alignm identity: 175
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 16, 48

Conread position: 4-232
Cow position:
Alignm length: 230
Alignm identity: 157
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 77, 98

Conread position: 4-236
Cow position:
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 85

Conread position: 4-246
Cow position:
Alignm length: 252
Alignm identity: 181
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 145

Conread position: 4-247
Cow position:
Alignm length: 253
Alignm identity: 194
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 11, 58

Conread position: 4-247
Cow position:
Alignm length: 245
Alignm identity: 168
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 79

Conread position: 4-247
Cow position:
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 4-247
Cow position:
Alignm length: 245
Alignm identity: 168
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 78

Conread position: 4-255
Cow position:
Alignm length: 253
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 75

Conread position: 4-256
Cow position:
Alignm length: 261
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 72

Conread position: 4-270
Cow position:
Alignm length: 268
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 254, 75

Conread position: 4-274
Cow position:
Alignm length: 275
Alignm identity: 194
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 22, 183

Conread position: 4-277
Cow position:
Alignm length: 276
Alignm identity: 204
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 15, 95

Conread position: 5-107
Cow position:
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 5-148
Cow position:
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 5-183
Cow position:
Alignm length: 181
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 136

Conread position: 5-248
Cow position:
Alignm length: 246
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 210

Conread position: 5-251
Cow position:
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 101

Conread position: 5-274
Cow position:
Alignm length: 273
Alignm identity: 201
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 14, 94

Conread position: 6-233
Cow position:
Alignm length: 237
Alignm identity: 165
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 139

Conread position: 6-236
Cow position:
Alignm length: 232
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 226

Conread position: 6-255
Cow position:
Alignm length: 254
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 125, 18

Conread position: 6-256
Cow position:
Alignm length: 255
Alignm identity: 181
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 66, 13

Conread position: 7-245
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 68, 41

Conread position: 7-247
Cow position:
Alignm length: 241
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 72, 0

Conread position: 7-274
Cow position:
Alignm length: 269
Alignm identity: 196
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 251, 31

Conread position: 8-184
Cow position:
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 34

Conread position: 8-214
Cow position:
Alignm length: 210
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 115

Conread position: 8-221
Cow position:
Alignm length: 215
Alignm identity: 164
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 207, 133

Conread position: 8-226
Cow position:
Alignm length: 219
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-233
Cow position:
Alignm length: 228
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 47

Conread position: 8-239
Cow position:
Alignm length: 235
Alignm identity: 168
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 26, 76

Conread position: 8-250
Cow position:
Alignm length: 243
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 90, 0

Conread position: 8-251
Cow position:
Alignm length: 247
Alignm identity: 179
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 11, 92

Conread position: 8-272
Cow position:
Alignm length: 268
Alignm identity: 200
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 212, 133

Conread position: 8-274
Cow position:
Alignm length: 271
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 154

Conread position: 8-309
Cow position:
Alignm length: 305
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 65

Conread position: 9-250
Cow position:
Alignm length: 242
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 9-251
Cow position:
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 17

Conread position: 9-256
Cow position:
Alignm length: 249
Alignm identity: 168
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 63

Conread position: 9-264
Cow position:
Alignm length: 259
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 79

Conread position: 9-270
Cow position:
Alignm length: 266
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 14

Conread position: 9-272
Cow position:
Alignm length: 266
Alignm identity: 184
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 16, 71

Conread position: 9-319
Cow position:
Alignm length: 312
Alignm identity: 211
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 73, 26

Conread position: 10-201
Cow position:
Alignm length: 193
Alignm identity: 150
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 8, 21

Conread position: 10-218
Cow position:
Alignm length: 211
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 84

Conread position: 10-236
Cow position:
Alignm length: 228
Alignm identity: 162
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 94, 64

Conread position: 10-256
Cow position:
Alignm length: 249
Alignm identity: 161
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 73

Conread position: 10-288
Cow position:
Alignm length: 283
Alignm identity: 200
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 16, 73

Conread position: 11-158
Cow position:
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 64, 33

Conread position: 11-231
Cow position:
Alignm length: 228
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 108

Conread position: 11-247
Cow position:
Alignm length: 237
Alignm identity: 179
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 15, 0

Conread position: 11-251
Cow position:
Alignm length: 243
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 12

Conread position: 11-253
Cow position:
Alignm length: 251
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 95

Conread position: 12-236
Cow position:
Alignm length: 225
Alignm identity: 174
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 37, 0

Conread position: 12-238
Cow position:
Alignm length: 234
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 70

Conread position: 12-240
Cow position:
Alignm length: 232
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 71

Conread position: 12-251
Cow position:
Alignm length: 242
Alignm identity: 164
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 208, 70

Conread position: 12-274
Cow position:
Alignm length: 265
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 123

Conread position: 13-250
Cow position:
Alignm length: 239
Alignm identity: 183
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 91, 10

Conread position: 13-251
Cow position:
Alignm length: 245
Alignm identity: 187
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 131

Conread position: 14-187
Cow position:
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 97

Conread position: 14-199
Cow position:
Alignm length: 190
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 47

Conread position: 14-216
Cow position:
Alignm length: 203
Alignm identity: 153
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 9, 0

Conread position: 14-242
Cow position:
Alignm length: 234
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 14-247
Cow position:
Alignm length: 243
Alignm identity: 185
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 13, 0

Conread position: 14-254
Cow position:
Alignm length: 242
Alignm identity: 168
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 8, 66

Conread position: 14-266
Cow position:
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 14-306
Cow position:
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 85

Conread position: 15-229
Cow position:
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 62

Conread position: 15-256
Cow position:
Alignm length: 242
Alignm identity: 181
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 50, 0

Conread position: 15-272
Cow position:
Alignm length: 269
Alignm identity: 202
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 34, 136

Conread position: 16-262
Cow position:
Alignm length: 248
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 242, 66

Conread position: 17-236
Cow position:
Alignm length: 224
Alignm identity: 175
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 111, 76

Conread position: 17-236
Cow position:
Alignm length: 221
Alignm identity: 164
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 89, 124

Conread position: 17-256
Cow position:
Alignm length: 242
Alignm identity: 165
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 5, 66

Conread position: 17-256
Cow position:
Alignm length: 245
Alignm identity: 166
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 6, 66

Conread position: 19-251
Cow position:
Alignm length: 233
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 19-255
Cow position:
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 61

Conread position: 19-256
Cow position:
Alignm length: 239
Alignm identity: 159
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 188, 63

Conread position: 20-249
Cow position:
Alignm length: 233
Alignm identity: 164
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 63, 84

Conread position: 20-256
Cow position:
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 20-256
Cow position:
Alignm length: 240
Alignm identity: 182
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 167, 52

Conread position: 20-256
Cow position:
Alignm length: 241
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 61

Conread position: 21-209
Cow position:
Alignm length: 192
Alignm identity: 149
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 124, 22

Conread position: 22-237
Cow position:
Alignm length: 219
Alignm identity: 170
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 156, 52

Conread position: 22-263
Cow position:
Alignm length: 242
Alignm identity: 188
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 130, 0

Conread position: 24-256
Cow position:
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 25-257
Cow position:
Alignm length: 234
Alignm identity: 168
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 58, 68

Conread position: 27-256
Cow position:
Alignm length: 232
Alignm identity: 166
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 52

Conread position: 29-256
Cow position:
Alignm length: 231
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 31-256
Cow position:
Alignm length: 229
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 62

Conread position: 36-218
Cow position:
Alignm length: 185
Alignm identity: 153
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 68, 7

Conread position: 39-286
Cow position:
Alignm length: 250
Alignm identity: 171
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 210, 0

Show alignments to all cow chromosomes.