Cow genome map
| Conread name: | rspl40_a19.y1 |
| Conread position: | 1-126 |
| Cow position: | chr25:33111982-33112106 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 23 |
| Conread position: | 1-216 |
| Cow position: | chr25:17365275-17365481 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-250 |
| Cow position: | chr25:9957053-9957290 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 92 |
| Conread position: | 1-276 |
| Cow position: | chr25:18161274-18161018 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 20, 99 |
| Conread position: | 2-250 |
| Cow position: | chr25:6424602-6424843 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 3-256 |
| Cow position: | chr25:5514996-5514743 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 31, 229 |
| Conread position: | 4-220 |
| Cow position: | chr25:33141924-33142138 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 4-251 |
| Cow position: | chr25:7306286-7306039 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 4-251 |
| Cow position: | chr25:8918295-8918537 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 170, 22 |
| Conread position: | 4-251 |
| Cow position: | chr25:25827452-25827206 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 81, 228 |
| Conread position: | 4-254 |
| Cow position: | chr25:24136455-24136697 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 4-254 |
| Cow position: | chr25:26654892-26654645 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 4-255 |
| Cow position: | chr25:18564468-18564232 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 26 |
| Conread position: | 4-256 |
| Cow position: | chr25:23410647-23410398 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 151 |
| Conread position: | 4-270 |
| Cow position: | chr25:12756582-12756848 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 253, 26 |
| Conread position: | 4-272 |
| Cow position: | chr25:10138075-10137818 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 5-119 |
| Cow position: | chr25:16560192-16560308 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-128 |
| Cow position: | chr25:16691646-16691523 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-228 |
| Cow position: | chr25:40957004-40957223 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 151 |
| Conread position: | 5-244 |
| Cow position: | chr25:24405753-24405989 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 150 |
| Conread position: | 5-245 |
| Cow position: | chr25:8560847-8560616 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 5-256 |
| Cow position: | chr25:13799194-13798965 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 5-263 |
| Cow position: | chr25:34970446-34970209 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 5-269 |
| Cow position: | chr25:14570355-14570098 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 132 |
| Conread position: | 6-251 |
| Cow position: | chr25:20076474-20076235 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 192, 76 |
| Conread position: | 7-256 |
| Cow position: | chr25:33691536-33691290 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 8-173 |
| Cow position: | chr25:26457700-26457865 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 8-241 |
| Cow position: | chr25:22736096-22735874 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 8-251 |
| Cow position: | chr25:40321318-40321551 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 8-263 |
| Cow position: | chr25:6464053-6464301 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 8-264 |
| Cow position: | chr25:8512110-8512364 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 194 |
| Conread position: | 9-178 |
| Cow position: | chr25:36643977-36644140 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 14 |
| Conread position: | 9-236 |
| Cow position: | chr25:2136335-2136108 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 9-254 |
| Cow position: | chr25:12239170-12239401 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 9-256 |
| Cow position: | chr25:788240-788005 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 9-256 |
| Cow position: | chr25:6470238-6470486 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 9-272 |
| Cow position: | chr25:10012067-10012328 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 123 |
| Conread position: | 9-274 |
| Cow position: | chr25:20624955-20625214 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 9-289 |
| Cow position: | chr25:35345007-35344736 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 245, 42 |
| Conread position: | 10-280 |
| Cow position: | chr25:12824041-12824302 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 11-256 |
| Cow position: | chr25:20496512-20496276 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 12-240 |
| Cow position: | chr25:395327-395107 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 162, 18 |
| Conread position: | 12-256 |
| Cow position: | chr25:31732757-31733000 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 82 |
| Conread position: | 13-178 |
| Cow position: | chr25:18905860-18905695 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 13-233 |
| Cow position: | chr25:13333399-13333182 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 13-251 |
| Cow position: | chr25:13642337-13642575 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 125 |
| Conread position: | 13-274 |
| Cow position: | chr25:12234787-12235041 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 52 |
| Conread position: | 13-297 |
| Cow position: | chr25:35625209-35625473 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 14-177 |
| Cow position: | chr25:11989532-11989703 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 14-187 |
| Cow position: | chr25:5972441-5972270 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 14-229 |
| Cow position: | chr25:36779470-36779258 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 14-240 |
| Cow position: | chr25:22575547-22575766 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 166, 80 |
| Conread position: | 14-267 |
| Cow position: | chr25:36026982-36026731 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 14-272 |
| Cow position: | chr25:9961197-9961456 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 15-250 |
| Cow position: | chr25:16001553-16001779 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 211, 10 |
| Conread position: | 15-255 |
| Cow position: | chr25:2126438-2126206 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 16-165 |
| Cow position: | chr25:33411235-33411081 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 94 |
| Conread position: | 18-256 |
| Cow position: | chr25:37687208-37687424 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 18-288 |
| Cow position: | chr25:4002770-4002502 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 65, 83 |
| Conread position: | 19-172 |
| Cow position: | chr25:32606353-32606506 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-255 |
| Cow position: | chr25:26757405-26757176 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 19-260 |
| Cow position: | chr25:27504209-27504454 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 20-251 |
| Cow position: | chr25:22909890-22910103 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 20-251 |
| Cow position: | chr25:24227372-24227595 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 21-245 |
| Cow position: | chr25:14467113-14467335 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 184 |
| Conread position: | 21-256 |
| Cow position: | chr25:22203722-22203954 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 34 |
| Conread position: | 21-262 |
| Cow position: | chr25:36081843-36081604 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 22-256 |
| Cow position: | chr25:12204435-12204206 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 26-215 |
| Cow position: | chr25:16007755-16007566 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.