Cow genome map
| Conread name: | rspl40_a19.y1 |
| Conread position: | 1-148 |
| Cow position: | chr27:1953142-1953001 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-176 |
| Cow position: | chr27:12424950-12424788 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 1-212 |
| Cow position: | chr27:9169677-9169470 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 98, 81 |
| Conread position: | 1-228 |
| Cow position: | chr27:14937461-14937238 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 143 |
| Conread position: | 1-256 |
| Cow position: | chr27:16580586-16580839 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 143 |
| Conread position: | 1-256 |
| Cow position: | chr27:30676877-30677117 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 2-251 |
| Cow position: | chr27:19637611-19637847 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 2-275 |
| Cow position: | chr27:27867721-27867458 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 250, 63 |
| Conread position: | 4-251 |
| Cow position: | chr27:18543965-18544211 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 4-255 |
| Cow position: | chr27:22418797-22418549 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 4-256 |
| Cow position: | chr27:30868767-30868522 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 4-305 |
| Cow position: | chr27:2592516-2592805 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 5-177 |
| Cow position: | chr27:29679353-29679183 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 5-211 |
| Cow position: | chr27:6159954-6160155 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 5-229 |
| Cow position: | chr27:26595393-26595623 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 5-235 |
| Cow position: | chr27:6037094-6037319 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 5-256 |
| Cow position: | chr27:27049937-27049694 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 5-262 |
| Cow position: | chr27:12231940-12231685 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 5-264 |
| Cow position: | chr27:4664452-4664695 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 5-273 |
| Cow position: | chr27:8430467-8430203 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 87 |
| Conread position: | 5-289 |
| Cow position: | chr27:794763-795036 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 252, 24 |
| Conread position: | 6-256 |
| Cow position: | chr27:30703105-30702864 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 6-264 |
| Cow position: | chr27:27684146-27683891 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 6-304 |
| Cow position: | chr27:6620118-6620409 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-275 |
| Cow position: | chr27:20765983-20765723 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 246, 23 |
| Conread position: | 8-138 |
| Cow position: | chr27:9692076-9691948 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 8-252 |
| Cow position: | chr27:24341876-24342118 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 8-254 |
| Cow position: | chr27:30518654-30518885 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 8-255 |
| Cow position: | chr27:26492728-26492483 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 8-272 |
| Cow position: | chr27:20510165-20510420 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 9-189 |
| Cow position: | chr27:19601356-19601528 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 9-197 |
| Cow position: | chr27:23600242-23600424 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 9-228 |
| Cow position: | chr27:20591957-20592174 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 95 |
| Conread position: | 9-229 |
| Cow position: | chr27:23659361-23659149 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 9-247 |
| Cow position: | chr27:31373001-31372770 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 9-251 |
| Cow position: | chr27:24331698-24331939 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 9-255 |
| Cow position: | chr27:27020128-27019883 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 9-256 |
| Cow position: | chr27:6454186-6454431 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 90 |
| Conread position: | 9-256 |
| Cow position: | chr27:27053271-27053513 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 10-240 |
| Cow position: | chr27:30573269-30573049 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 10-256 |
| Cow position: | chr27:21351043-21350797 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 10-256 |
| Cow position: | chr27:26398279-26398041 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 73, 9 |
| Conread position: | 10-303 |
| Cow position: | chr27:11416425-11416707 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 142 |
| Conread position: | 11-245 |
| Cow position: | chr27:1498295-1498521 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 11-247 |
| Cow position: | chr27:30560892-30561121 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 11-274 |
| Cow position: | chr27:22723727-22723470 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 11-301 |
| Cow position: | chr27:29038961-29038678 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 182, 60 |
| Conread position: | 12-256 |
| Cow position: | chr27:22220535-22220772 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 12-256 |
| Cow position: | chr27:22440119-22440360 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 12-270 |
| Cow position: | chr27:20283621-20283863 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 12-308 |
| Cow position: | chr27:12596745-12597030 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 234, 20 |
| Conread position: | 13-178 |
| Cow position: | chr27:16493557-16493712 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 13-189 |
| Cow position: | chr27:464938-465113 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 13-235 |
| Cow position: | chr27:23554351-23554122 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 13-265 |
| Cow position: | chr27:21138802-21139053 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 13-274 |
| Cow position: | chr27:25471121-25471375 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 14-180 |
| Cow position: | chr27:18948617-18948448 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 14-256 |
| Cow position: | chr27:17472790-17473031 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 85, 158 |
| Conread position: | 14-256 |
| Cow position: | chr27:26441080-26440840 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 14-274 |
| Cow position: | chr27:26299817-26300074 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 15-213 |
| Cow position: | chr27:27550763-27550572 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 15-247 |
| Cow position: | chr27:19577656-19577883 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 107, 84 |
| Conread position: | 15-251 |
| Cow position: | chr27:15319434-15319665 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 155, 16 |
| Conread position: | 15-251 |
| Cow position: | chr27:28921916-28921683 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 15-253 |
| Cow position: | chr27:2683162-2682928 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 123 |
| Conread position: | 15-254 |
| Cow position: | chr27:4386079-4385849 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 211, 99 |
| Conread position: | 16-169 |
| Cow position: | chr27:14874620-14874774 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 17-181 |
| Cow position: | chr27:21041588-21041746 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 17-189 |
| Cow position: | chr27:10086699-10086530 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 17-251 |
| Cow position: | chr27:23455171-23454933 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 214 |
| Conread position: | 18-256 |
| Cow position: | chr27:11412705-11412934 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 18-256 |
| Cow position: | chr27:13005824-13006050 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 19-247 |
| Cow position: | chr27:6523024-6523255 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 120 |
| Conread position: | 19-264 |
| Cow position: | chr27:8048756-8048512 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 24-187 |
| Cow position: | chr27:1142038-1141877 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 24-264 |
| Cow position: | chr27:26935917-26935693 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 202, 11 |
| Conread position: | 25-255 |
| Cow position: | chr27:28518287-28518502 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 27-240 |
| Cow position: | chr27:20354578-20354782 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 27-246 |
| Cow position: | chr27:21978144-21977929 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 28-229 |
| Cow position: | chr27:6038591-6038782 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 28-273 |
| Cow position: | chr27:29019757-29019512 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 31-297 |
| Cow position: | chr27:11762736-11762478 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 218, 40 |
| Conread position: | 62-247 |
| Cow position: | chr27:25982681-25982498 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.