Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-251
Cow position: chr28:34199114-34199349 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 229, 70

Conread position: 1-251
Cow position: chr28:34877975-34878224 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 140

Conread position: 1-256
Cow position: chr28:2814513-2814755 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 17, 79

Conread position: 2-149
Cow position: chr28:15577267-15577414 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-218
Cow position: chr28:11007188-11006958 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 178
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 42, 0

Conread position: 3-255
Cow position: chr28:7865316-7865073 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 90, 79

Conread position: 4-136
Cow position: chr28:4763867-4763734 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 4-153
Cow position: chr28:21570178-21570030 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 117, 57

Conread position: 4-165
Cow position: chr28:26901079-26901240 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 46

Conread position: 4-240
Cow position: chr28:32300369-32300600 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 94, 0

Conread position: 4-241
Cow position: chr28:11500897-11501133 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 19

Conread position: 4-253
Cow position: chr28:14218484-14218729 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 76, 89

Conread position: 4-255
Cow position: chr28:7607221-7606972 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 15, 0

Conread position: 4-256
Cow position: chr28:20963542-20963788 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 168, 22

Conread position: 4-256
Cow position: chr28:21598264-21598509 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 79, 21

Conread position: 4-278
Cow position: chr28:14493533-14493265 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 17, 148

Conread position: 5-150
Cow position: chr28:33285123-33285267 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 91

Conread position: 5-246
Cow position: chr28:15590963-15590743 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 18, 46

Conread position: 5-251
Cow position: chr28:13693742-13693498 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 176

Conread position: 5-254
Cow position: chr28:21355212-21354970 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 7-258
Cow position: chr28:16687011-16686773 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 244, 41

Conread position: 8-144
Cow position: chr28:25507219-25507081 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 98

Conread position: 8-227
Cow position: chr28:10053346-10053566 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 148
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 75, 85

Conread position: 8-236
Cow position: chr28:34082030-34082258 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 74, 81

Conread position: 8-256
Cow position: chr28:21844942-21844700 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 73, 60

Conread position: 8-289
Cow position: chr28:25797105-25796826 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 148, 56

Conread position: 8-303
Cow position: chr28:11422829-11423113 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 210
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 237, 71

Conread position: 9-236
Cow position: chr28:21380864-21380641 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 9-242
Cow position: chr28:26220241-26220019 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 67, 84

Conread position: 9-255
Cow position: chr28:11426557-11426800 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 15

Conread position: 9-255
Cow position: chr28:12619554-12619307 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 67, 91

Conread position: 9-256
Cow position: chr28:6971366-6971595 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 94, 16

Conread position: 9-256
Cow position: chr28:9390380-9390621 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 9-256
Cow position: chr28:31971769-31972003 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 54, 91

Conread position: 9-262
Cow position: chr28:16204341-16204597 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 24, 75

Conread position: 9-268
Cow position: chr28:9285387-9285645 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 74

Conread position: 9-274
Cow position: chr28:25564068-25563801 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 94

Conread position: 10-214
Cow position: chr28:15081938-15082139 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 11, 153

Conread position: 10-245
Cow position: chr28:14649333-14649102 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 83

Conread position: 10-251
Cow position: chr28:25700888-25701109 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 10-251
Cow position: chr28:34150541-34150782 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 163

Conread position: 10-255
Cow position: chr28:23621529-23621293 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 10-285
Cow position: chr28:16243774-16244047 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 248, 82

Conread position: 10-298
Cow position: chr28:15934657-15934942 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 195
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 56, 9

Conread position: 11-251
Cow position: chr28:31871763-31871998 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 70, 27

Conread position: 11-273
Cow position: chr28:11380058-11380317 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 56

Conread position: 12-190
Cow position: chr28:19563836-19564015 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 94

Conread position: 12-236
Cow position: chr28:34430439-34430663 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 12

Conread position: 12-254
Cow position: chr28:9821992-9822227 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 190
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 95

Conread position: 12-255
Cow position: chr28:27218307-27218065 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 70, 0

Conread position: 12-256
Cow position: chr28:20313257-20313019 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 34, 13

Conread position: 12-270
Cow position: chr28:7590198-7590454 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 71, 81

Conread position: 12-318
Cow position: chr28:27659697-27660015 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 100, 65

Conread position: 13-247
Cow position: chr28:17153750-17153535 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 13-274
Cow position: chr28:10642036-10642293 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 91

Conread position: 13-274
Cow position: chr28:18462630-18462887 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 52

Conread position: 13-280
Cow position: chr28:30978256-30978003 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 7, 75

Conread position: 14-245
Cow position: chr28:2340514-2340286 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 29, 0

Conread position: 14-247
Cow position: chr28:8022129-8022358 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 65, 0

Conread position: 14-256
Cow position: chr28:29455676-29455913 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 14-301
Cow position: chr28:15677870-15677598 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 7, 52

Conread position: 15-208
Cow position: chr28:10035383-10035192 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 26, 119

Conread position: 15-250
Cow position: chr28:22321406-22321172 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 68, 78

Conread position: 15-251
Cow position: chr28:17625152-17625385 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 159

Conread position: 16-251
Cow position: chr28:15689019-15688790 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 120, 0

Conread position: 16-251
Cow position: chr28:28590716-28590488 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 49, 0

Conread position: 16-255
Cow position: chr28:10745192-10744954 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 10, 89

Conread position: 18-256
Cow position: chr28:9851594-9851377 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 79, 0

Conread position: 19-191
Cow position: chr28:26982761-26982938 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 19-256
Cow position: chr28:23231089-23231322 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 114

Conread position: 20-226
Cow position: chr28:8347706-8347508 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 84

Conread position: 20-256
Cow position: chr28:30995253-30995024 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 41, 0

Conread position: 20-288
Cow position: chr28:24996614-24996876 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 146, 62

Conread position: 21-255
Cow position: chr28:6486568-6486337 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 55, 67

Conread position: 21-288
Cow position: chr28:8408708-8408456 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 35

Conread position: 22-247
Cow position: chr28:21873743-21873525 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 22-284
Cow position: chr28:29073780-29074038 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 32

Conread position: 24-254
Cow position: chr28:7684712-7684931 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 82, 56

Conread position: 25-247
Cow position: chr28:28414643-28414423 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 0

Conread position: 25-255
Cow position: chr28:17288188-17287969 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 25-268
Cow position: chr28:11451494-11451736 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 58, 17

Conread position: 28-247
Cow position: chr28:2898965-2898748 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 76

Conread position: 28-254
Cow position: chr28:25825902-25826123 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 76, 140

Conread position: 31-289
Cow position: chr28:19133756-19133496 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 33-261
Cow position: chr28:15063379-15063601 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 158, 42

Conread position: 35-239
Cow position: chr28:2091132-2090927 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 67, 131

Conread position: 37-229
Cow position: chr28:20265352-20265159 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 47, 82

Conread position: 68-256
Cow position: chr28:25334951-25334764 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 69-223
Cow position: chr28:6993807-6993652 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 91, 0

Conread position: 79-251
Cow position: chr28:10514175-10514343 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 141
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.