Cow genome map
| Conread name: | rspl40_a19.y1 |
| Conread position: | 1-113 |
| Cow position: | chr29:14758873-14758987 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-253 |
| Cow position: | chr29:30544880-30545122 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 1-287 |
| Cow position: | chr29:23743069-23743330 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 276, 12 |
| Conread position: | 1-289 |
| Cow position: | chr29:42268682-42268394 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 1-350 |
| Cow position: | chr29:24604151-24604509 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 3-274 |
| Cow position: | chr29:22068758-22069027 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 4-101 |
| Cow position: | chr29:23233434-23233336 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 4-142 |
| Cow position: | chr29:942613-942474 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 4-206 |
| Cow position: | chr29:22778194-22778395 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-209 |
| Cow position: | chr29:31489306-31489103 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 4-213 |
| Cow position: | chr29:463673-463874 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 67 |
| Conread position: | 4-236 |
| Cow position: | chr29:2274847-2275077 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 4-236 |
| Cow position: | chr29:37960993-37961220 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 4-240 |
| Cow position: | chr29:2644318-2644552 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 4-246 |
| Cow position: | chr29:18963714-18963487 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 4-251 |
| Cow position: | chr29:3396089-3395852 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 4-255 |
| Cow position: | chr29:41530831-41530588 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 4-256 |
| Cow position: | chr29:4367706-4367458 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 4-266 |
| Cow position: | chr29:18021696-18021948 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 4-267 |
| Cow position: | chr29:32799724-32799976 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 79, 148 |
| Conread position: | 4-278 |
| Cow position: | chr29:9686018-9686283 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 4-304 |
| Cow position: | chr29:356302-356016 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 273, 21 |
| Conread position: | 5-232 |
| Cow position: | chr29:39023367-39023577 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 5-246 |
| Cow position: | chr29:32655449-32655677 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 5-247 |
| Cow position: | chr29:18695233-18695003 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 5-255 |
| Cow position: | chr29:603337-603570 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 5-256 |
| Cow position: | chr29:12901124-12901371 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 5-268 |
| Cow position: | chr29:650262-650000 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 5-273 |
| Cow position: | chr29:11634804-11634543 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 6-255 |
| Cow position: | chr29:1956113-1956351 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-176 |
| Cow position: | chr29:25923984-25924155 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 8-168 |
| Cow position: | chr29:16055150-16055314 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 8-201 |
| Cow position: | chr29:709139-709331 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 154 |
| Conread position: | 8-204 |
| Cow position: | chr29:10188035-10187848 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 9-128 |
| Cow position: | chr29:6772112-6771993 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 9-200 |
| Cow position: | chr29:10153808-10153997 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 7, 142 |
| Conread position: | 9-213 |
| Cow position: | chr29:41006551-41006338 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 110, 70 |
| Conread position: | 9-240 |
| Cow position: | chr29:11787776-11787545 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 71 |
| Conread position: | 9-247 |
| Cow position: | chr29:29769371-29769600 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 9-268 |
| Cow position: | chr29:13554117-13553857 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 9-269 |
| Cow position: | chr29:18072913-18072653 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 9-275 |
| Cow position: | chr29:11366215-11365966 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 9-303 |
| Cow position: | chr29:29302681-29302962 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 34 |
| Conread position: | 10-182 |
| Cow position: | chr29:7393078-7392905 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 145 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 10-251 |
| Cow position: | chr29:13634323-13634558 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 10-252 |
| Cow position: | chr29:34297593-34297824 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 11-247 |
| Cow position: | chr29:5964442-5964664 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 11-295 |
| Cow position: | chr29:12451355-12451071 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 103 |
| Conread position: | 11-380 |
| Cow position: | chr29:11915797-11915430 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 227, 60 |
| Conread position: | 12-227 |
| Cow position: | chr29:42886361-42886146 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 12-229 |
| Cow position: | chr29:4520311-4520099 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 12-247 |
| Cow position: | chr29:32963533-32963300 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 12-256 |
| Cow position: | chr29:4194141-4194384 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 89 |
| Conread position: | 12-264 |
| Cow position: | chr29:39567663-39567418 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 13-241 |
| Cow position: | chr29:42170162-42169951 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 14-229 |
| Cow position: | chr29:19508926-19508724 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 14-236 |
| Cow position: | chr29:41747417-41747197 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 14-256 |
| Cow position: | chr29:12004787-12005027 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 68 |
| Conread position: | 15-255 |
| Cow position: | chr29:29057151-29056921 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 15-256 |
| Cow position: | chr29:28195539-28195782 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 16-250 |
| Cow position: | chr29:12783984-12784212 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 16-255 |
| Cow position: | chr29:87045-87279 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 16-255 |
| Cow position: | chr29:6217576-6217810 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 17-247 |
| Cow position: | chr29:44135489-44135715 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 189, 87 |
| Conread position: | 17-272 |
| Cow position: | chr29:21534705-21534958 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 104 |
| Conread position: | 17-312 |
| Cow position: | chr29:4066055-4065779 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 18-254 |
| Cow position: | chr29:13372636-13372402 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 19-213 |
| Cow position: | chr29:6286188-6286378 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 19-270 |
| Cow position: | chr29:34609751-34610001 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 19-279 |
| Cow position: | chr29:34736499-34736746 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 20-256 |
| Cow position: | chr29:6293506-6293730 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 20-256 |
| Cow position: | chr29:7407920-7408152 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 21-250 |
| Cow position: | chr29:11071731-11071961 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 192 |
| Conread position: | 21-251 |
| Cow position: | chr29:21925178-21924952 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 21-264 |
| Cow position: | chr29:22175654-22175423 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 23-256 |
| Cow position: | chr29:37719872-37719649 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 25-226 |
| Cow position: | chr29:19253857-19254056 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 25-251 |
| Cow position: | chr29:19907318-19907098 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-262 |
| Cow position: | chr29:20626539-20626307 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 57 |
| Conread position: | 26-152 |
| Cow position: | chr29:28993469-28993341 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 26-246 |
| Cow position: | chr29:36404784-36404568 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 31-209 |
| Cow position: | chr29:10475368-10475195 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 47 |
| Conread position: | 40-262 |
| Cow position: | chr29:1612627-1612841 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 89, 54 |
Show alignments to all cow chromosomes.