Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-178
Cow position:
Alignm length: 179
Alignm identity: 136
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 103, 78

Conread position: 1-197
Cow position:
Alignm length: 201
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 92

Conread position: 1-250
Cow position:
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 1-251
Cow position:
Alignm length: 254
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 137

Conread position: 1-255
Cow position:
Alignm length: 257
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 84

Conread position: 1-256
Cow position:
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 1-278
Cow position:
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 96

Conread position: 2-255
Cow position:
Alignm length: 258
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 76

Conread position: 3-247
Cow position:
Alignm length: 247
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 80, 14

Conread position: 3-262
Cow position:
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 3-305
Cow position:
Alignm length: 312
Alignm identity: 222
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 42

Conread position: 4-154
Cow position:
Alignm length: 151
Alignm identity: 122
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 4-236
Cow position:
Alignm length: 233
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 97, 0

Conread position: 4-236
Cow position:
Alignm length: 236
Alignm identity: 165
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 48, 91

Conread position: 4-236
Cow position:
Alignm length: 233
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 4-240
Cow position:
Alignm length: 237
Alignm identity: 179
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 4-245
Cow position:
Alignm length: 246
Alignm identity: 175
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 19, 100

Conread position: 4-248
Cow position:
Alignm length: 247
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 25, 200

Conread position: 4-256
Cow position:
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 4-264
Cow position:
Alignm length: 263
Alignm identity: 183
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 18, 72

Conread position: 4-264
Cow position:
Alignm length: 263
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 89, 15

Conread position: 4-267
Cow position:
Alignm length: 267
Alignm identity: 197
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 13, 88

Conread position: 4-274
Cow position:
Alignm length: 273
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 249, 15

Conread position: 4-274
Cow position:
Alignm length: 274
Alignm identity: 194
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 15

Conread position: 4-290
Cow position:
Alignm length: 287
Alignm identity: 193
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 4-317
Cow position:
Alignm length: 318
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 253, 14

Conread position: 5-108
Cow position:
Alignm length: 106
Alignm identity: 89
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 5-218
Cow position:
Alignm length: 215
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 50

Conread position: 5-246
Cow position:
Alignm length: 243
Alignm identity: 185
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 13, 83

Conread position: 5-247
Cow position:
Alignm length: 248
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 5-251
Cow position:
Alignm length: 248
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 12, 46

Conread position: 5-253
Cow position:
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 55

Conread position: 5-254
Cow position:
Alignm length: 250
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 5-256
Cow position:
Alignm length: 252
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 5-268
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 12, 36

Conread position: 5-275
Cow position:
Alignm length: 273
Alignm identity: 198
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 98, 27

Conread position: 5-305
Cow position:
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 40

Conread position: 6-256
Cow position:
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 79, 85

Conread position: 6-256
Cow position:
Alignm length: 251
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 7-171
Cow position:
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 101, 17

Conread position: 7-226
Cow position:
Alignm length: 223
Alignm identity: 172
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 14, 94

Conread position: 7-251
Cow position:
Alignm length: 247
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 67

Conread position: 7-307
Cow position:
Alignm length: 314
Alignm identity: 215
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 80, 160

Conread position: 8-168
Cow position:
Alignm length: 162
Alignm identity: 134
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 10, 0

Conread position: 8-210
Cow position:
Alignm length: 205
Alignm identity: 150
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 83, 11

Conread position: 8-217
Cow position:
Alignm length: 212
Alignm identity: 166
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 9, 124

Conread position: 8-225
Cow position:
Alignm length: 219
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 96

Conread position: 8-240
Cow position:
Alignm length: 234
Alignm identity: 177
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 9, 59

Conread position: 8-251
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 75, 23

Conread position: 8-255
Cow position:
Alignm length: 249
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 141, 67

Conread position: 8-255
Cow position:
Alignm length: 249
Alignm identity: 179
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 10, 91

Conread position: 8-256
Cow position:
Alignm length: 252
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 84

Conread position: 8-289
Cow position:
Alignm length: 287
Alignm identity: 219
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 64

Conread position: 9-196
Cow position:
Alignm length: 189
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 183, 9

Conread position: 9-204
Cow position:
Alignm length: 198
Alignm identity: 156
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 7, 0

Conread position: 9-213
Cow position:
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 74, 9

Conread position: 9-214
Cow position:
Alignm length: 207
Alignm identity: 152
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 8, 78

Conread position: 9-251
Cow position:
Alignm length: 243
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 9-253
Cow position:
Alignm length: 257
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 100

Conread position: 9-254
Cow position:
Alignm length: 248
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 213

Conread position: 9-255
Cow position:
Alignm length: 248
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 21

Conread position: 9-256
Cow position:
Alignm length: 251
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 67

Conread position: 9-256
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 216, 73

Conread position: 9-262
Cow position:
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 17

Conread position: 9-263
Cow position:
Alignm length: 256
Alignm identity: 180
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 94, 15

Conread position: 9-263
Cow position:
Alignm length: 256
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 248, 59

Conread position: 9-274
Cow position:
Alignm length: 267
Alignm identity: 185
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 249, 66

Conread position: 9-274
Cow position:
Alignm length: 268
Alignm identity: 195
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 94, 70

Conread position: 9-292
Cow position:
Alignm length: 286
Alignm identity: 211
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 249, 49

Conread position: 9-298
Cow position:
Alignm length: 292
Alignm identity: 208
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 268, 39

Conread position: 10-129
Cow position:
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 105

Conread position: 10-238
Cow position:
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 55

Conread position: 10-247
Cow position:
Alignm length: 240
Alignm identity: 173
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 120, 31

Conread position: 10-249
Cow position:
Alignm length: 240
Alignm identity: 165
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 10-250
Cow position:
Alignm length: 245
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 149

Conread position: 10-256
Cow position:
Alignm length: 252
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 69

Conread position: 10-256
Cow position:
Alignm length: 250
Alignm identity: 177
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 100, 69

Conread position: 10-256
Cow position:
Alignm length: 248
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 15

Conread position: 10-256
Cow position:
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 79

Conread position: 10-272
Cow position:
Alignm length: 267
Alignm identity: 196
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 8, 146

Conread position: 10-290
Cow position:
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 119

Conread position: 11-256
Cow position:
Alignm length: 251
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 205

Conread position: 11-256
Cow position:
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 44

Conread position: 11-288
Cow position:
Alignm length: 282
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 12

Conread position: 12-146
Cow position:
Alignm length: 138
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 91, 67

Conread position: 12-148
Cow position:
Alignm length: 137
Alignm identity: 109
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 12-236
Cow position:
Alignm length: 225
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 12-250
Cow position:
Alignm length: 240
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 92

Conread position: 12-256
Cow position:
Alignm length: 256
Alignm identity: 179
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 12-274
Cow position:
Alignm length: 270
Alignm identity: 191
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 90

Conread position: 12-275
Cow position:
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 53

Conread position: 13-153
Cow position:
Alignm length: 143
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 50, 63

Conread position: 13-176
Cow position:
Alignm length: 167
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 12, 60

Conread position: 13-228
Cow position:
Alignm length: 216
Alignm identity: 169
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 41, 0

Conread position: 13-275
Cow position:
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 147

Conread position: 14-209
Cow position:
Alignm length: 197
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 10

Conread position: 14-256
Cow position:
Alignm length: 244
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 69, 9

Conread position: 14-262
Cow position:
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 46

Conread position: 14-264
Cow position:
Alignm length: 254
Alignm identity: 184
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 9, 70

Conread position: 15-134
Cow position:
Alignm length: 120
Alignm identity: 98
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 15-236
Cow position:
Alignm length: 222
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 67, 0

Conread position: 15-247
Cow position:
Alignm length: 234
Alignm identity: 169
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 12, 57

Conread position: 15-254
Cow position:
Alignm length: 240
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 11, 0

Conread position: 15-255
Cow position:
Alignm length: 242
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 68

Conread position: 15-256
Cow position:
Alignm length: 242
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 55, 0

Conread position: 15-256
Cow position:
Alignm length: 247
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 68, 164

Conread position: 16-238
Cow position:
Alignm length: 229
Alignm identity: 160
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 69

Conread position: 16-247
Cow position:
Alignm length: 238
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 221

Conread position: 16-262
Cow position:
Alignm length: 250
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 66, 88

Conread position: 17-251
Cow position:
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 98

Conread position: 17-267
Cow position:
Alignm length: 256
Alignm identity: 193
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 84, 24

Conread position: 18-202
Cow position:
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 18-247
Cow position:
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 140

Conread position: 18-256
Cow position:
Alignm length: 243
Alignm identity: 167
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 11, 114

Conread position: 18-256
Cow position:
Alignm length: 240
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 75

Conread position: 18-274
Cow position:
Alignm length: 261
Alignm identity: 188
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 15, 204

Conread position: 20-256
Cow position:
Alignm length: 237
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 21-257
Cow position:
Alignm length: 238
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 206, 50

Conread position: 22-247
Cow position:
Alignm length: 227
Alignm identity: 177
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 82, 32

Conread position: 22-248
Cow position:
Alignm length: 227
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 22-251
Cow position:
Alignm length: 231
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 134

Conread position: 22-255
Cow position:
Alignm length: 235
Alignm identity: 168
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 81, 57

Conread position: 22-274
Cow position:
Alignm length: 256
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 158, 63

Conread position: 22-275
Cow position:
Alignm length: 257
Alignm identity: 185
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 225, 132

Conread position: 24-147
Cow position:
Alignm length: 127
Alignm identity: 104
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 86, 0

Conread position: 24-256
Cow position:
Alignm length: 239
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 129

Conread position: 25-247
Cow position:
Alignm length: 226
Alignm identity: 166
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 58, 79

Conread position: 25-251
Cow position:
Alignm length: 228
Alignm identity: 160
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 58, 67

Conread position: 26-255
Cow position:
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 80

Conread position: 27-274
Cow position:
Alignm length: 250
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 231, 44

Conread position: 28-256
Cow position:
Alignm length: 236
Alignm identity: 158
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 54

Conread position: 32-251
Cow position:
Alignm length: 222
Alignm identity: 168
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 45, 131

Conread position: 32-255
Cow position:
Alignm length: 228
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 50

Conread position: 56-251
Cow position:
Alignm length: 198
Alignm identity: 153
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 88

Conread position: 66-249
Cow position:
Alignm length: 184
Alignm identity: 146
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 89, 0

Show alignments to all cow chromosomes.