Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 103, 0

Conread position: 1-236
Cow position:
Alignm length: 239
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 145

Conread position: 1-256
Cow position:
Alignm length: 258
Alignm identity: 178
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 22, 87

Conread position: 2-256
Cow position:
Alignm length: 256
Alignm identity: 193
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 224, 21

Conread position: 4-177
Cow position:
Alignm length: 174
Alignm identity: 129
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 4-192
Cow position:
Alignm length: 191
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 76

Conread position: 4-202
Cow position:
Alignm length: 201
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 85

Conread position: 4-218
Cow position:
Alignm length: 215
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 4-228
Cow position:
Alignm length: 226
Alignm identity: 164
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 78, 39

Conread position: 4-245
Cow position:
Alignm length: 243
Alignm identity: 188
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 14, 42

Conread position: 4-250
Cow position:
Alignm length: 257
Alignm identity: 189
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 77, 19

Conread position: 4-251
Cow position:
Alignm length: 251
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 4-251
Cow position:
Alignm length: 252
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 81

Conread position: 4-251
Cow position:
Alignm length: 248
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 61

Conread position: 4-256
Cow position:
Alignm length: 253
Alignm identity: 176
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 4-257
Cow position:
Alignm length: 254
Alignm identity: 180
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 4-260
Cow position:
Alignm length: 259
Alignm identity: 184
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 14, 144

Conread position: 4-262
Cow position:
Alignm length: 263
Alignm identity: 179
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 65

Conread position: 4-264
Cow position:
Alignm length: 261
Alignm identity: 184
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 4-264
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 184

Conread position: 5-167
Cow position:
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 123

Conread position: 5-204
Cow position:
Alignm length: 204
Alignm identity: 150
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 85, 0

Conread position: 5-214
Cow position:
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 149

Conread position: 5-230
Cow position:
Alignm length: 227
Alignm identity: 168
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 114

Conread position: 5-247
Cow position:
Alignm length: 247
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 5-262
Cow position:
Alignm length: 265
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 62

Conread position: 5-264
Cow position:
Alignm length: 268
Alignm identity: 188
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 61, 36

Conread position: 5-270
Cow position:
Alignm length: 279
Alignm identity: 206
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 12, 168

Conread position: 5-275
Cow position:
Alignm length: 285
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 265

Conread position: 5-287
Cow position:
Alignm length: 284
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 238

Conread position: 5-289
Cow position:
Alignm length: 286
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 55

Conread position: 5-304
Cow position:
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 91

Conread position: 6-161
Cow position:
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 63, 17

Conread position: 6-250
Cow position:
Alignm length: 247
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 10, 50

Conread position: 6-250
Cow position:
Alignm length: 245
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 6-256
Cow position:
Alignm length: 254
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 99

Conread position: 6-288
Cow position:
Alignm length: 290
Alignm identity: 210
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 20, 133

Conread position: 7-255
Cow position:
Alignm length: 261
Alignm identity: 178
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 76, 12

Conread position: 8-142
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 96

Conread position: 8-215
Cow position:
Alignm length: 208
Alignm identity: 163
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 16, 0

Conread position: 8-239
Cow position:
Alignm length: 233
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 58

Conread position: 8-254
Cow position:
Alignm length: 260
Alignm identity: 195
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 63, 10

Conread position: 8-254
Cow position:
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 133

Conread position: 8-256
Cow position:
Alignm length: 249
Alignm identity: 187
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 46, 0

Conread position: 8-275
Cow position:
Alignm length: 282
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 186

Conread position: 9-139
Cow position:
Alignm length: 132
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 121, 17

Conread position: 9-178
Cow position:
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 33

Conread position: 9-218
Cow position:
Alignm length: 211
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 9-246
Cow position:
Alignm length: 243
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 66

Conread position: 9-247
Cow position:
Alignm length: 239
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 9-247
Cow position:
Alignm length: 241
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 16, 61

Conread position: 9-251
Cow position:
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 9-254
Cow position:
Alignm length: 247
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 217, 70

Conread position: 9-255
Cow position:
Alignm length: 247
Alignm identity: 183
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 78, 0

Conread position: 9-255
Cow position:
Alignm length: 248
Alignm identity: 181
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 9, 21

Conread position: 9-256
Cow position:
Alignm length: 250
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 186, 9

Conread position: 9-264
Cow position:
Alignm length: 262
Alignm identity: 188
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 13, 96

Conread position: 9-268
Cow position:
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 229

Conread position: 10-116
Cow position:
Alignm length: 108
Alignm identity: 89
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 10-184
Cow position:
Alignm length: 176
Alignm identity: 138
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 7, 93

Conread position: 10-200
Cow position:
Alignm length: 192
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 123

Conread position: 10-240
Cow position:
Alignm length: 232
Alignm identity: 174
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 70

Conread position: 10-251
Cow position:
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 10-256
Cow position:
Alignm length: 248
Alignm identity: 179
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 20, 74

Conread position: 10-256
Cow position:
Alignm length: 255
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 15

Conread position: 10-274
Cow position:
Alignm length: 266
Alignm identity: 183
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 257, 15

Conread position: 10-275
Cow position:
Alignm length: 269
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 51

Conread position: 11-197
Cow position:
Alignm length: 187
Alignm identity: 134
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 128, 0

Conread position: 11-209
Cow position:
Alignm length: 199
Alignm identity: 144
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 11-256
Cow position:
Alignm length: 248
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 12, 72

Conread position: 11-256
Cow position:
Alignm length: 249
Alignm identity: 187
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 5, 89

Conread position: 11-256
Cow position:
Alignm length: 249
Alignm identity: 176
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 65, 12

Conread position: 11-262
Cow position:
Alignm length: 253
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 247, 71

Conread position: 11-269
Cow position:
Alignm length: 260
Alignm identity: 181
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 247, 15

Conread position: 11-273
Cow position:
Alignm length: 265
Alignm identity: 182
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 65, 8

Conread position: 11-274
Cow position:
Alignm length: 270
Alignm identity: 198
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 30, 42

Conread position: 11-275
Cow position:
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 12-254
Cow position:
Alignm length: 247
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 91, 70

Conread position: 12-256
Cow position:
Alignm length: 255
Alignm identity: 184
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 12-256
Cow position:
Alignm length: 246
Alignm identity: 169
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 178, 59

Conread position: 12-256
Cow position:
Alignm length: 248
Alignm identity: 184
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 8, 76

Conread position: 12-257
Cow position:
Alignm length: 247
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 71

Conread position: 12-275
Cow position:
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 141, 12

Conread position: 12-309
Cow position:
Alignm length: 315
Alignm identity: 213
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 154

Conread position: 13-154
Cow position:
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 13-155
Cow position:
Alignm length: 143
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 13-175
Cow position:
Alignm length: 165
Alignm identity: 134
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 11, 0

Conread position: 13-179
Cow position:
Alignm length: 167
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 49, 0

Conread position: 13-247
Cow position:
Alignm length: 236
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 54

Conread position: 13-251
Cow position:
Alignm length: 240
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 18

Conread position: 13-255
Cow position:
Alignm length: 244
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 90, 66

Conread position: 13-256
Cow position:
Alignm length: 245
Alignm identity: 182
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 38

Conread position: 13-261
Cow position:
Alignm length: 250
Alignm identity: 186
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 98, 73

Conread position: 13-264
Cow position:
Alignm length: 254
Alignm identity: 184
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 59

Conread position: 13-305
Cow position:
Alignm length: 300
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 14-181
Cow position:
Alignm length: 169
Alignm identity: 132
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 66

Conread position: 14-201
Cow position:
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 14-232
Cow position:
Alignm length: 223
Alignm identity: 175
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 27

Conread position: 14-240
Cow position:
Alignm length: 227
Alignm identity: 168
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 77, 0

Conread position: 14-245
Cow position:
Alignm length: 238
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 10

Conread position: 14-253
Cow position:
Alignm length: 242
Alignm identity: 191
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 123, 40

Conread position: 14-267
Cow position:
Alignm length: 255
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 96

Conread position: 14-288
Cow position:
Alignm length: 278
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 44

Conread position: 15-162
Cow position:
Alignm length: 148
Alignm identity: 123
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 49, 0

Conread position: 15-235
Cow position:
Alignm length: 228
Alignm identity: 176
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 40

Conread position: 15-255
Cow position:
Alignm length: 244
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 115

Conread position: 15-256
Cow position:
Alignm length: 247
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 68, 91

Conread position: 15-262
Cow position:
Alignm length: 249
Alignm identity: 165
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 11

Conread position: 15-274
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 205, 39

Conread position: 15-274
Cow position:
Alignm length: 261
Alignm identity: 196
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 43, 9

Conread position: 16-175
Cow position:
Alignm length: 160
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 16-194
Cow position:
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 16-248
Cow position:
Alignm length: 240
Alignm identity: 182
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 70, 0

Conread position: 17-215
Cow position:
Alignm length: 203
Alignm identity: 149
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 17, 88

Conread position: 17-251
Cow position:
Alignm length: 236
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 125

Conread position: 17-262
Cow position:
Alignm length: 248
Alignm identity: 179
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 84, 65

Conread position: 17-289
Cow position:
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 7

Conread position: 17-297
Cow position:
Alignm length: 288
Alignm identity: 204
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 239, 74

Conread position: 18-233
Cow position:
Alignm length: 221
Alignm identity: 171
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 15, 153

Conread position: 18-235
Cow position:
Alignm length: 220
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 58, 85

Conread position: 19-238
Cow position:
Alignm length: 223
Alignm identity: 164
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 64, 75

Conread position: 19-240
Cow position:
Alignm length: 226
Alignm identity: 175
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 55, 17

Conread position: 19-245
Cow position:
Alignm length: 228
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 67

Conread position: 19-247
Cow position:
Alignm length: 231
Alignm identity: 168
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 151, 12

Conread position: 19-248
Cow position:
Alignm length: 231
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 86

Conread position: 19-250
Cow position:
Alignm length: 236
Alignm identity: 162
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 64, 12

Conread position: 20-274
Cow position:
Alignm length: 267
Alignm identity: 188
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 67

Conread position: 20-304
Cow position:
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 237, 64

Conread position: 21-251
Cow position:
Alignm length: 231
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 21-268
Cow position:
Alignm length: 254
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 242

Conread position: 22-240
Cow position:
Alignm length: 219
Alignm identity: 154
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 22-256
Cow position:
Alignm length: 236
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 69

Conread position: 24-139
Cow position:
Alignm length: 116
Alignm identity: 95
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 24-256
Cow position:
Alignm length: 236
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 80

Conread position: 24-275
Cow position:
Alignm length: 257
Alignm identity: 181
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 76, 211

Conread position: 25-258
Cow position:
Alignm length: 237
Alignm identity: 175
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 58, 79

Conread position: 27-218
Cow position:
Alignm length: 193
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 55

Conread position: 28-240
Cow position:
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 108, 0

Conread position: 28-256
Cow position:
Alignm length: 229
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 111, 0

Conread position: 28-256
Cow position:
Alignm length: 231
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 100

Conread position: 30-268
Cow position:
Alignm length: 239
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 0

Conread position: 30-273
Cow position:
Alignm length: 247
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 106

Conread position: 34-168
Cow position:
Alignm length: 136
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 87, 70

Conread position: 36-233
Cow position:
Alignm length: 198
Alignm identity: 161
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 0

Conread position: 68-247
Cow position:
Alignm length: 180
Alignm identity: 140
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.