Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-129
Cow position:
Alignm length: 131
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 5, 111

Conread position: 1-177
Cow position:
Alignm length: 183
Alignm identity: 136
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 1-209
Cow position:
Alignm length: 219
Alignm identity: 161
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 5, 87

Conread position: 1-251
Cow position:
Alignm length: 253
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 5, 18

Conread position: 1-255
Cow position:
Alignm length: 259
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 56

Conread position: 1-256
Cow position:
Alignm length: 257
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 23

Conread position: 2-256
Cow position:
Alignm length: 255
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-165
Cow position:
Alignm length: 168
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 66, 96

Conread position: 4-168
Cow position:
Alignm length: 166
Alignm identity: 122
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 4-175
Cow position:
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 4-232
Cow position:
Alignm length: 237
Alignm identity: 168
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 0

Conread position: 4-234
Cow position:
Alignm length: 242
Alignm identity: 168
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 79, 27

Conread position: 4-246
Cow position:
Alignm length: 245
Alignm identity: 184
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 126, 66

Conread position: 4-246
Cow position:
Alignm length: 247
Alignm identity: 181
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 101, 29

Conread position: 4-247
Cow position:
Alignm length: 245
Alignm identity: 171
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 223, 78

Conread position: 4-251
Cow position:
Alignm length: 253
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 155

Conread position: 4-253
Cow position:
Alignm length: 254
Alignm identity: 189
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 216, 151

Conread position: 4-256
Cow position:
Alignm length: 254
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 89

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 175
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 173, 75

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 171
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 79, 14

Conread position: 4-262
Cow position:
Alignm length: 265
Alignm identity: 195
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 80, 157

Conread position: 4-271
Cow position:
Alignm length: 273
Alignm identity: 191
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 67, 211

Conread position: 4-272
Cow position:
Alignm length: 279
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 176

Conread position: 4-275
Cow position:
Alignm length: 273
Alignm identity: 191
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 20, 77

Conread position: 4-289
Cow position:
Alignm length: 290
Alignm identity: 207
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 199, 90

Conread position: 4-303
Cow position:
Alignm length: 301
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 52

Conread position: 4-305
Cow position:
Alignm length: 308
Alignm identity: 215
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 72, 38

Conread position: 5-167
Cow position:
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 76

Conread position: 5-193
Cow position:
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 16, 146

Conread position: 5-239
Cow position:
Alignm length: 239
Alignm identity: 183
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 22, 153

Conread position: 5-256
Cow position:
Alignm length: 255
Alignm identity: 182
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 78, 14

Conread position: 5-256
Cow position:
Alignm length: 252
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 5-256
Cow position:
Alignm length: 253
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 151

Conread position: 5-257
Cow position:
Alignm length: 253
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 5-262
Cow position:
Alignm length: 272
Alignm identity: 196
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 18, 149

Conread position: 5-271
Cow position:
Alignm length: 271
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 143

Conread position: 5-274
Cow position:
Alignm length: 274
Alignm identity: 203
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 13, 60

Conread position: 5-274
Cow position:
Alignm length: 278
Alignm identity: 195
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 17, 76

Conread position: 6-133
Cow position:
Alignm length: 130
Alignm identity: 104
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 20

Conread position: 6-240
Cow position:
Alignm length: 235
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 19, 0

Conread position: 6-256
Cow position:
Alignm length: 253
Alignm identity: 175
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 20

Conread position: 6-259
Cow position:
Alignm length: 256
Alignm identity: 179
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 81

Conread position: 7-189
Cow position:
Alignm length: 187
Alignm identity: 149
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 11, 59

Conread position: 7-233
Cow position:
Alignm length: 230
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 76, 18

Conread position: 7-251
Cow position:
Alignm length: 246
Alignm identity: 178
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 34, 12

Conread position: 7-289
Cow position:
Alignm length: 287
Alignm identity: 203
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 66, 150

Conread position: 8-146
Cow position:
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 8-154
Cow position:
Alignm length: 157
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 57

Conread position: 8-229
Cow position:
Alignm length: 223
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 8-256
Cow position:
Alignm length: 249
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 8-256
Cow position:
Alignm length: 250
Alignm identity: 177
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 63

Conread position: 8-265
Cow position:
Alignm length: 261
Alignm identity: 185
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 17, 84

Conread position: 8-315
Cow position:
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 149

Conread position: 9-119
Cow position:
Alignm length: 112
Alignm identity: 96
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 9-152
Cow position:
Alignm length: 146
Alignm identity: 117
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 97

Conread position: 9-229
Cow position:
Alignm length: 221
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 9-254
Cow position:
Alignm length: 247
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 6, 79

Conread position: 9-255
Cow position:
Alignm length: 249
Alignm identity: 180
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 17, 70

Conread position: 9-269
Cow position:
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 55

Conread position: 9-273
Cow position:
Alignm length: 265
Alignm identity: 190
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 77, 0

Conread position: 9-274
Cow position:
Alignm length: 271
Alignm identity: 193
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 24, 150

Conread position: 9-302
Cow position:
Alignm length: 297
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 22

Conread position: 10-130
Cow position:
Alignm length: 122
Alignm identity: 98
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 10-256
Cow position:
Alignm length: 248
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 17, 95

Conread position: 10-264
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 16, 76

Conread position: 10-272
Cow position:
Alignm length: 266
Alignm identity: 189
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 8, 89

Conread position: 11-251
Cow position:
Alignm length: 241
Alignm identity: 173
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 11-251
Cow position:
Alignm length: 244
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 72, 93

Conread position: 11-254
Cow position:
Alignm length: 244
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 11-263
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 94

Conread position: 12-247
Cow position:
Alignm length: 244
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 13

Conread position: 12-251
Cow position:
Alignm length: 241
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 79

Conread position: 12-262
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 151

Conread position: 12-270
Cow position:
Alignm length: 261
Alignm identity: 188
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 64

Conread position: 13-256
Cow position:
Alignm length: 244
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 13-256
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 27

Conread position: 13-270
Cow position:
Alignm length: 261
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 10

Conread position: 13-289
Cow position:
Alignm length: 284
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 167, 251

Conread position: 14-119
Cow position:
Alignm length: 106
Alignm identity: 86
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 14-218
Cow position:
Alignm length: 205
Alignm identity: 160
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 147, 0

Conread position: 14-251
Cow position:
Alignm length: 242
Alignm identity: 187
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 18, 121

Conread position: 14-256
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 141

Conread position: 14-256
Cow position:
Alignm length: 246
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 74

Conread position: 14-268
Cow position:
Alignm length: 255
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 14-273
Cow position:
Alignm length: 268
Alignm identity: 198
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 28

Conread position: 15-203
Cow position:
Alignm length: 191
Alignm identity: 157
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 83, 15

Conread position: 15-240
Cow position:
Alignm length: 228
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 88, 67

Conread position: 15-247
Cow position:
Alignm length: 235
Alignm identity: 160
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 11, 66

Conread position: 15-250
Cow position:
Alignm length: 242
Alignm identity: 171
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 17, 90

Conread position: 15-255
Cow position:
Alignm length: 243
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 65

Conread position: 15-256
Cow position:
Alignm length: 244
Alignm identity: 176
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 8, 58

Conread position: 16-218
Cow position:
Alignm length: 205
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 52

Conread position: 16-245
Cow position:
Alignm length: 232
Alignm identity: 176
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 90, 100

Conread position: 17-247
Cow position:
Alignm length: 231
Alignm identity: 170
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 78, 0

Conread position: 17-261
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 172, 74

Conread position: 18-248
Cow position:
Alignm length: 234
Alignm identity: 161
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 65, 84

Conread position: 18-287
Cow position:
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 137

Conread position: 19-154
Cow position:
Alignm length: 136
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 117, 0

Conread position: 19-256
Cow position:
Alignm length: 238
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 19-364
Cow position:
Alignm length: 348
Alignm identity: 229
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 238, 63

Conread position: 20-246
Cow position:
Alignm length: 227
Alignm identity: 169
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 0

Conread position: 20-246
Cow position:
Alignm length: 228
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 15

Conread position: 20-256
Cow position:
Alignm length: 242
Alignm identity: 163
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 119

Conread position: 20-264
Cow position:
Alignm length: 258
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 62, 146

Conread position: 21-250
Cow position:
Alignm length: 230
Alignm identity: 168
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 70, 0

Conread position: 22-292
Cow position:
Alignm length: 273
Alignm identity: 185
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 193, 60

Conread position: 22-303
Cow position:
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 76

Conread position: 24-161
Cow position:
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 24-256
Cow position:
Alignm length: 235
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 117

Conread position: 24-305
Cow position:
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 74

Conread position: 25-247
Cow position:
Alignm length: 226
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 58, 98

Conread position: 25-289
Cow position:
Alignm length: 268
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 79

Conread position: 26-214
Cow position:
Alignm length: 190
Alignm identity: 152
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 80, 7

Conread position: 28-258
Cow position:
Alignm length: 235
Alignm identity: 165
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 55, 0

Conread position: 32-241
Cow position:
Alignm length: 210
Alignm identity: 147
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 188, 0

Conread position: 35-252
Cow position:
Alignm length: 228
Alignm identity: 166
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 128

Conread position: 36-246
Cow position:
Alignm length: 211
Alignm identity: 163
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 105, 0

Conread position: 45-229
Cow position:
Alignm length: 185
Alignm identity: 138
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 96, 0

Conread position: 57-218
Cow position:
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 21

Conread position: 58-256
Cow position:
Alignm length: 200
Alignm identity: 158
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 160, 98

Conread position: 58-273
Cow position:
Alignm length: 217
Alignm identity: 172
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 194, 78

Conread position: 62-241
Cow position:
Alignm length: 181
Alignm identity: 140
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 94

Show alignments to all cow chromosomes.