Cow genome map

Conread name: rspl40_a19.y1

Conread position: 1-246
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 98, 18

Conread position: 1-247
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 5, 104

Conread position: 1-248
Cow position:
Alignm length: 251
Alignm identity: 174
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 198, 24

Conread position: 1-254
Cow position:
Alignm length: 256
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 5, 99

Conread position: 1-262
Cow position:
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 49

Conread position: 1-275
Cow position:
Alignm length: 283
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 166

Conread position: 1-317
Cow position:
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 155

Conread position: 2-171
Cow position:
Alignm length: 170
Alignm identity: 130
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 0

Conread position: 2-255
Cow position:
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 3-178
Cow position:
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 75, 28

Conread position: 3-244
Cow position:
Alignm length: 242
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 3-255
Cow position:
Alignm length: 257
Alignm identity: 184
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 193, 16

Conread position: 3-256
Cow position:
Alignm length: 259
Alignm identity: 185
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 11, 94

Conread position: 4-240
Cow position:
Alignm length: 239
Alignm identity: 169
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 19, 79

Conread position: 4-245
Cow position:
Alignm length: 244
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 21

Conread position: 4-247
Cow position:
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 62

Conread position: 4-249
Cow position:
Alignm length: 250
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 95

Conread position: 4-251
Cow position:
Alignm length: 249
Alignm identity: 181
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 14, 226

Conread position: 4-255
Cow position:
Alignm length: 252
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 159

Conread position: 4-256
Cow position:
Alignm length: 256
Alignm identity: 178
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 14, 22

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 168
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 15

Conread position: 4-256
Cow position:
Alignm length: 258
Alignm identity: 184
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 23, 137

Conread position: 4-256
Cow position:
Alignm length: 255
Alignm identity: 177
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 23, 90

Conread position: 4-267
Cow position:
Alignm length: 268
Alignm identity: 195
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 78, 15

Conread position: 5-146
Cow position:
Alignm length: 145
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 14, 94

Conread position: 5-148
Cow position:
Alignm length: 144
Alignm identity: 113
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 5-168
Cow position:
Alignm length: 165
Alignm identity: 129
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 139, 93

Conread position: 5-194
Cow position:
Alignm length: 195
Alignm identity: 155
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 155

Conread position: 5-204
Cow position:
Alignm length: 202
Alignm identity: 164
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 51

Conread position: 5-237
Cow position:
Alignm length: 233
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-238
Cow position:
Alignm length: 240
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 5-240
Cow position:
Alignm length: 237
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 13, 87

Conread position: 5-246
Cow position:
Alignm length: 242
Alignm identity: 180
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 26, 0

Conread position: 5-251
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 5-253
Cow position:
Alignm length: 251
Alignm identity: 180
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 136, 49

Conread position: 5-254
Cow position:
Alignm length: 251
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 143

Conread position: 5-256
Cow position:
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 5-256
Cow position:
Alignm length: 254
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 18

Conread position: 5-256
Cow position:
Alignm length: 256
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 5-256
Cow position:
Alignm length: 255
Alignm identity: 189
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 16, 95

Conread position: 5-256
Cow position:
Alignm length: 254
Alignm identity: 183
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 17, 50

Conread position: 5-263
Cow position:
Alignm length: 260
Alignm identity: 193
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 46

Conread position: 5-264
Cow position:
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 5-274
Cow position:
Alignm length: 277
Alignm identity: 192
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 14, 162

Conread position: 5-305
Cow position:
Alignm length: 308
Alignm identity: 225
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 10, 38

Conread position: 6-236
Cow position:
Alignm length: 233
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 151

Conread position: 6-261
Cow position:
Alignm length: 258
Alignm identity: 182
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 59

Conread position: 7-197
Cow position:
Alignm length: 191
Alignm identity: 149
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 7-251
Cow position:
Alignm length: 247
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 150

Conread position: 7-286
Cow position:
Alignm length: 281
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 103

Conread position: 8-145
Cow position:
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 8-145
Cow position:
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 8-208
Cow position:
Alignm length: 204
Alignm identity: 161
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 8, 150

Conread position: 8-240
Cow position:
Alignm length: 234
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 46

Conread position: 8-248
Cow position:
Alignm length: 247
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 17

Conread position: 8-251
Cow position:
Alignm length: 245
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 122, 79

Conread position: 8-254
Cow position:
Alignm length: 248
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 83

Conread position: 8-255
Cow position:
Alignm length: 248
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 8-256
Cow position:
Alignm length: 249
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 0

Conread position: 8-256
Cow position:
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 8-256
Cow position:
Alignm length: 249
Alignm identity: 174
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 8-256
Cow position:
Alignm length: 255
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 99

Conread position: 8-268
Cow position:
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 218

Conread position: 8-318
Cow position:
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 126

Conread position: 9-229
Cow position:
Alignm length: 225
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 8, 93

Conread position: 9-234
Cow position:
Alignm length: 229
Alignm identity: 162
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 94, 21

Conread position: 9-236
Cow position:
Alignm length: 228
Alignm identity: 163
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 9-240
Cow position:
Alignm length: 233
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 42

Conread position: 9-247
Cow position:
Alignm length: 243
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 147

Conread position: 9-251
Cow position:
Alignm length: 243
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 9-255
Cow position:
Alignm length: 249
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 85

Conread position: 9-261
Cow position:
Alignm length: 259
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 114, 61

Conread position: 9-272
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 64

Conread position: 9-274
Cow position:
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 129, 77

Conread position: 10-238
Cow position:
Alignm length: 232
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 83

Conread position: 10-251
Cow position:
Alignm length: 249
Alignm identity: 178
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 8, 152

Conread position: 10-256
Cow position:
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 46

Conread position: 10-275
Cow position:
Alignm length: 266
Alignm identity: 191
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 77, 0

Conread position: 11-229
Cow position:
Alignm length: 219
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 144, 0

Conread position: 11-239
Cow position:
Alignm length: 229
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 80, 0

Conread position: 11-247
Cow position:
Alignm length: 241
Alignm identity: 179
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 121, 14

Conread position: 11-251
Cow position:
Alignm length: 242
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 89

Conread position: 11-254
Cow position:
Alignm length: 246
Alignm identity: 182
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 92, 68

Conread position: 11-255
Cow position:
Alignm length: 246
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 92, 71

Conread position: 11-256
Cow position:
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 69

Conread position: 11-262
Cow position:
Alignm length: 253
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 160

Conread position: 12-208
Cow position:
Alignm length: 201
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 133

Conread position: 12-238
Cow position:
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 70

Conread position: 12-251
Cow position:
Alignm length: 241
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 63

Conread position: 12-255
Cow position:
Alignm length: 248
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 12-256
Cow position:
Alignm length: 247
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 71, 82

Conread position: 12-256
Cow position:
Alignm length: 249
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 90

Conread position: 12-258
Cow position:
Alignm length: 258
Alignm identity: 177
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 72, 182

Conread position: 12-274
Cow position:
Alignm length: 264
Alignm identity: 180
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 246, 59

Conread position: 13-186
Cow position:
Alignm length: 174
Alignm identity: 140
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 85, 0

Conread position: 13-228
Cow position:
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 90

Conread position: 13-256
Cow position:
Alignm length: 245
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 86, 69

Conread position: 13-256
Cow position:
Alignm length: 245
Alignm identity: 176
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 70, 91

Conread position: 13-256
Cow position:
Alignm length: 246
Alignm identity: 173
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 61, 70

Conread position: 13-256
Cow position:
Alignm length: 247
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 203

Conread position: 13-274
Cow position:
Alignm length: 264
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 207

Conread position: 13-305
Cow position:
Alignm length: 293
Alignm identity: 205
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 13-321
Cow position:
Alignm length: 311
Alignm identity: 216
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 244, 51

Conread position: 14-169
Cow position:
Alignm length: 159
Alignm identity: 124
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 61, 9

Conread position: 14-196
Cow position:
Alignm length: 183
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 14-229
Cow position:
Alignm length: 216
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 14-236
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 68, 0

Conread position: 14-244
Cow position:
Alignm length: 233
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 9

Conread position: 14-255
Cow position:
Alignm length: 242
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 14-256
Cow position:
Alignm length: 249
Alignm identity: 174
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 55, 132

Conread position: 14-277
Cow position:
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 160

Conread position: 14-286
Cow position:
Alignm length: 283
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 65

Conread position: 14-289
Cow position:
Alignm length: 286
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 37, 10

Conread position: 15-256
Cow position:
Alignm length: 243
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 88, 10

Conread position: 16-236
Cow position:
Alignm length: 222
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 16-246
Cow position:
Alignm length: 236
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 59, 123

Conread position: 16-256
Cow position:
Alignm length: 244
Alignm identity: 169
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 16-256
Cow position:
Alignm length: 249
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 67, 141

Conread position: 17-247
Cow position:
Alignm length: 236
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 86

Conread position: 18-227
Cow position:
Alignm length: 211
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 62

Conread position: 18-256
Cow position:
Alignm length: 240
Alignm identity: 168
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 89, 25

Conread position: 19-246
Cow position:
Alignm length: 230
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 30

Conread position: 19-289
Cow position:
Alignm length: 271
Alignm identity: 185
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 20-187
Cow position:
Alignm length: 169
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 156, 78

Conread position: 20-213
Cow position:
Alignm length: 195
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 11

Conread position: 20-254
Cow position:
Alignm length: 235
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 6, 0

Conread position: 21-193
Cow position:
Alignm length: 173
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 22-206
Cow position:
Alignm length: 185
Alignm identity: 139
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 22-253
Cow position:
Alignm length: 232
Alignm identity: 164
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 23-229
Cow position:
Alignm length: 207
Alignm identity: 150
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 23-288
Cow position:
Alignm length: 271
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 239

Conread position: 24-256
Cow position:
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 0

Conread position: 25-256
Cow position:
Alignm length: 233
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 78, 54

Conread position: 31-257
Cow position:
Alignm length: 232
Alignm identity: 163
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 52, 143

Conread position: 32-303
Cow position:
Alignm length: 275
Alignm identity: 182
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 214, 126

Conread position: 33-229
Cow position:
Alignm length: 198
Alignm identity: 146
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 188

Conread position: 49-228
Cow position:
Alignm length: 181
Alignm identity: 153
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 101

Conread position: 71-304
Cow position:
Alignm length: 249
Alignm identity: 187
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 173

Conread position: 80-237
Cow position:
Alignm length: 158
Alignm identity: 124
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.