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Cow genome map

           
Conread name:
           
rssp06_d15.y1
        

               
Conread position:
               
66-503
               

               
Cow position:
               
chr21:17184201-17183741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 221
               

               
Conread position:
               
69-595
               

               
Cow position:
               
chr21:38121364-38120831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
70-591
               

               
Cow position:
               
chr21:5898127-5898663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 326
               

               
Conread position:
               
74-428
               

               
Cow position:
               
chr21:10673383-10673027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 132
               

               
Conread position:
               
75-520
               

               
Cow position:
               
chr21:45356088-45355639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
76-289
               

               
Cow position:
               
chr21:742547-742325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 173
               

               
Conread position:
               
76-528
               

               
Cow position:
               
chr21:32339475-32339940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
76-595
               

               
Cow position:
               
chr21:27229533-27230064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
77-237
               

               
Cow position:
               
chr21:18495484-18495315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
77-289
               

               
Cow position:
               
chr21:18135621-18135834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
77-292
               

               
Cow position:
               
chr21:42145089-42144861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
77-296
               

               
Cow position:
               
chr21:40475771-40475531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 199
               

               
Conread position:
               
77-403
               

               
Cow position:
               
chr21:7394638-7394300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
77-465
               

               
Cow position:
               
chr21:957939-957526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 122
               

               
Conread position:
               
77-504
               

               
Cow position:
               
chr21:802055-802475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
77-586
               

               
Cow position:
               
chr21:4400064-4399537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 204
               

               
Conread position:
               
77-586
               

               
Cow position:
               
chr21:30231448-30231963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
77-595
               

               
Cow position:
               
chr21:5238658-5238134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
63, 326
               

               
Conread position:
               
77-595
               

               
Cow position:
               
chr21:45970909-45971427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 337
               

               
Conread position:
               
78-274
               

               
Cow position:
               
chr21:25012336-25012135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
78-343
               

               
Cow position:
               
chr21:44829509-44829783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
78-490
               

               
Cow position:
               
chr21:28244736-28244310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 190
               

               
Conread position:
               
78-581
               

               
Cow position:
               
chr21:44825628-44826133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
79-271
               

               
Cow position:
               
chr21:31658886-31659091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
79-595
               

               
Cow position:
               
chr21:41974121-41974651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 308
               

               
Conread position:
               
81-359
               

               
Cow position:
               
chr21:17983236-17982939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 5
               

               
Conread position:
               
81-376
               

               
Cow position:
               
chr21:28919265-28919578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
56, 118
               

               
Conread position:
               
81-462
               

               
Cow position:
               
chr21:8418659-8419041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 45
               

               
Conread position:
               
81-522
               

               
Cow position:
               
chr21:22861258-22860803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
82-427
               

               
Cow position:
               
chr21:30236577-30236920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
83-244
               

               
Cow position:
               
chr21:21159067-21158898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
83-258
               

               
Cow position:
               
chr21:30205116-30205302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
83-270
               

               
Cow position:
               
chr21:26735661-26735466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 132
               

               
Conread position:
               
83-277
               

               
Cow position:
               
chr21:9905598-9905799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
83-283
               

               
Cow position:
               
chr21:25014775-25014982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 105
               

               
Conread position:
               
83-289
               

               
Cow position:
               
chr21:31279517-31279294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
83-299
               

               
Cow position:
               
chr21:19359927-19360148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
83-337
               

               
Cow position:
               
chr21:44724112-44724380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
83-345
               

               
Cow position:
               
chr21:37235632-37235362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
83-374
               

               
Cow position:
               
chr21:976884-977196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 301
               

               
Conread position:
               
83-393
               

               
Cow position:
               
chr21:44214375-44214055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
83-421
               

               
Cow position:
               
chr21:33580675-33580315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
53, 321
               

               
Conread position:
               
83-436
               

               
Cow position:
               
chr21:6909625-6909991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
83-438
               

               
Cow position:
               
chr21:46551861-46552214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
83-514
               

               
Cow position:
               
chr21:5427191-5426755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
83-524
               

               
Cow position:
               
chr21:41580005-41579550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
83-527
               

               
Cow position:
               
chr21:40134410-40133951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 98
               

               
Conread position:
               
83-569
               

               
Cow position:
               
chr21:38901027-38900527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 129
               

               
Conread position:
               
83-588
               

               
Cow position:
               
chr21:33982550-33983075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 305
               

               
Conread position:
               
83-589
               

               
Cow position:
               
chr21:17512038-17511513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
83-592
               

               
Cow position:
               
chr21:9939940-9940446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
83-595
               

               
Cow position:
               
chr21:12154389-12153861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
83-595
               

               
Cow position:
               
chr21:33996986-33997497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
85-309
               

               
Cow position:
               
chr21:24797917-24797676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
46, 223
               

               
Conread position:
               
86-229
               

               
Cow position:
               
chr21:9219280-9219139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
86-260
               

               
Cow position:
               
chr21:2785240-2785419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
86-341
               

               
Cow position:
               
chr21:8426690-8426427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
86-346
               

               
Cow position:
               
chr21:28030540-28030264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
86-374
               

               
Cow position:
               
chr21:5464994-5464695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
86-397
               

               
Cow position:
               
chr21:33413836-33414158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
33, 169
               

               
Conread position:
               
86-427
               

               
Cow position:
               
chr21:10561338-10561687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
86-519
               

               
Cow position:
               
chr21:42135372-42135820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
86-585
               

               
Cow position:
               
chr21:46972904-46973397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
86-589
               

               
Cow position:
               
chr21:22718522-22719046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr21:37837818-37838040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
87-363
               

               
Cow position:
               
chr21:42209385-42209671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
87-368
               

               
Cow position:
               
chr21:29014657-29014959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
87-540
               

               
Cow position:
               
chr21:30592054-30592515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 173
               

               
Conread position:
               
87-591
               

               
Cow position:
               
chr21:28924360-28923874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 262
               

               
Conread position:
               
87-595
               

               
Cow position:
               
chr21:643570-643065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr21:46451713-46451921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
88-321
               

               
Cow position:
               
chr21:31159645-31159404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 137
               

               
Conread position:
               
88-396
               

               
Cow position:
               
chr21:15543980-15544290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
88-426
               

               
Cow position:
               
chr21:20418447-20418787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 52
               

               
Conread position:
               
88-475
               

               
Cow position:
               
chr21:10823799-10823402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 52
               

               
Conread position:
               
88-589
               

               
Cow position:
               
chr21:3254392-3253912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
88-595
               

               
Cow position:
               
chr21:3236762-3236260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 126
               

               
Conread position:
               
88-595
               

               
Cow position:
               
chr21:23587131-23586591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 305
               

               
Conread position:
               
88-595
               

               
Cow position:
               
chr21:30848689-30849216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 313
               

               
Conread position:
               
89-289
               

               
Cow position:
               
chr21:20318754-20318551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
89-588
               

               
Cow position:
               
chr21:13089236-13089743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
89-595
               

               
Cow position:
               
chr21:28810017-28810521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 120
               

               
Conread position:
               
90-405
               

               
Cow position:
               
chr21:37014168-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
93-257
               

               
Cow position:
               
chr21:2294266-2294099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
40, 143
               

               
Conread position:
               
93-467
               

               
Cow position:
               
chr21:42007214-42007603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 175
               

               
Conread position:
               
95-295
               

               
Cow position:
               
chr21:7768678-7768470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
95-396
               

               
Cow position:
               
chr21:1511538-1511219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 295
               

               
Conread position:
               
96-595
               

               
Cow position:
               
chr21:7581665-7582177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 295
               

               
Conread position:
               
98-595
               

               
Cow position:
               
chr21:7564069-7564594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
99-408
               

               
Cow position:
               
chr21:41107528-41107846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
99-412
               

               
Cow position:
               
chr21:30217967-30218271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
41, 120
               

               
Conread position:
               
99-416
               

               
Cow position:
               
chr21:6998189-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
99-427
               

               
Cow position:
               
chr21:8207005-8206669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 100
               

               
Conread position:
               
99-520
               

               
Cow position:
               
chr21:34740074-34739652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
99-595
               

               
Cow position:
               
chr21:9416489-9415971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
99-595
               

               
Cow position:
               
chr21:27863271-27863791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
99-595
               

               
Cow position:
               
chr21:46848885-46849391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 272
               

               
Conread position:
               
100-527
               

               
Cow position:
               
chr21:1059305-1058873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
100-583
               

               
Cow position:
               
chr21:14760804-14760325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 157
               

               
Conread position:
               
100-589
               

               
Cow position:
               
chr21:82306-81804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
101-589
               

               
Cow position:
               
chr21:32297287-32297768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
101-592
               

               
Cow position:
               
chr21:5392305-5392807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
102-500
               

               
Cow position:
               
chr21:18790335-18790733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 112
               

               
Conread position:
               
105-294
               

               
Cow position:
               
chr21:44591982-44592176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
106-268
               

               
Cow position:
               
chr21:20548124-20548301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
106-369
               

               
Cow position:
               
chr21:21907201-21907476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
107-285
               

               
Cow position:
               
chr21:7221108-7221298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
110-296
               

               
Cow position:
               
chr21:46470406-46470217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
110-489
               

               
Cow position:
               
chr21:18064692-18065089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
110-595
               

               
Cow position:
               
chr21:32237503-32237028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 126
               

               
Conread position:
               
113-291
               

               
Cow position:
               
chr21:13164079-13163895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
113-405
               

               
Cow position:
               
chr21:30256054-30256350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
113-554
               

               
Cow position:
               
chr21:27568952-27569395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
114-271
               

               
Cow position:
               
chr21:265837-265680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
114-337
               

               
Cow position:
               
chr21:13036691-13036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
114-505
               

               
Cow position:
               
chr21:15911614-15911218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
115-333
               

               
Cow position:
               
chr21:29405009-29405226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
115-595
               

               
Cow position:
               
chr21:4281664-4282136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
118-349
               

               
Cow position:
               
chr21:26753701-26753469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
118-520
               

               
Cow position:
               
chr21:12801536-12801941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
118-561
               

               
Cow position:
               
chr21:11114922-11114467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
118-595
               

               
Cow position:
               
chr21:23800918-23801392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 20
               

               
Conread position:
               
120-296
               

               
Cow position:
               
chr21:9417945-9418124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
121-403
               

               
Cow position:
               
chr21:10410430-10410139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
121-512
               

               
Cow position:
               
chr21:47763910-47764301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
123-247
               

               
Cow position:
               
chr21:27744232-27744105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
123-260
               

               
Cow position:
               
chr21:32272133-32271994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
123-261
               

               
Cow position:
               
chr21:8986229-8986088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
123-451
               

               
Cow position:
               
chr21:47250-46911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 267
               

               
Conread position:
               
123-467
               

               
Cow position:
               
chr21:10004680-10005029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
123-479
               

               
Cow position:
               
chr21:10633433-10633796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
123-520
               

               
Cow position:
               
chr21:13584849-13585255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 182
               

               
Conread position:
               
123-570
               

               
Cow position:
               
chr21:42905192-42905622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
123-595
               

               
Cow position:
               
chr21:10264238-10263770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
124-494
               

               
Cow position:
               
chr21:47495449-47495827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
125-284
               

               
Cow position:
               
chr21:6735984-6736146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
125-595
               

               
Cow position:
               
chr21:39888533-39889016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
126-295
               

               
Cow position:
               
chr21:27677683-27677514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
126-371
               

               
Cow position:
               
chr21:41522208-41522456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
126-374
               

               
Cow position:
               
chr21:868719-868977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
126-418
               

               
Cow position:
               
chr21:17559716-17560023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
126-429
               

               
Cow position:
               
chr21:37789794-37790106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
126-493
               

               
Cow position:
               
chr21:20589514-20589151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
126-527
               

               
Cow position:
               
chr21:41621328-41620915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
126-554
               

               
Cow position:
               
chr21:15444882-15445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
126-561
               

               
Cow position:
               
chr21:38918402-38917980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
126-582
               

               
Cow position:
               
chr21:39403320-39403797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
126-585
               

               
Cow position:
               
chr21:10070723-10071191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
126-585
               

               
Cow position:
               
chr21:36756821-36756353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
126-589
               

               
Cow position:
               
chr21:6834250-6833786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
126-595
               

               
Cow position:
               
chr21:19195961-19196440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
126-595
               

               
Cow position:
               
chr21:19767057-19766582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
128-296
               

               
Cow position:
               
chr21:42463491-42463657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr21:14126477-14126264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 6
               

               
Conread position:
               
128-455
               

               
Cow position:
               
chr21:10538050-10538394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
22, 299
               

               
Conread position:
               
128-478
               

               
Cow position:
               
chr21:26245115-26244777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
129-243
               

               
Cow position:
               
chr21:40305147-40305027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
129-250
               

               
Cow position:
               
chr21:37361041-37361165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
129-276
               

               
Cow position:
               
chr21:5341889-5342043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
129-289
               

               
Cow position:
               
chr21:36682527-36682363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
129-293
               

               
Cow position:
               
chr21:30157600-30157770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 41
               

               
Conread position:
               
129-294
               

               
Cow position:
               
chr21:30119902-30119727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
129-295
               

               
Cow position:
               
chr21:17265796-17265969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
129-356
               

               
Cow position:
               
chr21:734793-734562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
129-369
               

               
Cow position:
               
chr21:19514056-19513818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
129-389
               

               
Cow position:
               
chr21:41140518-41140783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
129-399
               

               
Cow position:
               
chr21:36910135-36909859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 156
               

               
Conread position:
               
129-404
               

               
Cow position:
               
chr21:28237504-28237794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
27, 124
               

               
Conread position:
               
129-433
               

               
Cow position:
               
chr21:23979982-23980290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
129-480
               

               
Cow position:
               
chr21:45920857-45921215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
129-485
               

               
Cow position:
               
chr21:27624903-27624551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 159
               

               
Conread position:
               
129-517
               

               
Cow position:
               
chr21:42841397-42841785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 29
               

               
Conread position:
               
129-520
               

               
Cow position:
               
chr21:18779770-18780167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
129-527
               

               
Cow position:
               
chr21:29485180-29484780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
129-556
               

               
Cow position:
               
chr21:33921-33489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
129-584
               

               
Cow position:
               
chr21:46264372-46263916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
129-585
               

               
Cow position:
               
chr21:33350945-33350483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 218
               

               
Conread position:
               
129-588
               

               
Cow position:
               
chr21:34010194-34010652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
129-589
               

               
Cow position:
               
chr21:42384711-42384242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 255
               

               
Conread position:
               
129-594
               

               
Cow position:
               
chr21:36795805-36795329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
129-595
               

               
Cow position:
               
chr21:16696575-16696098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
130-263
               

               
Cow position:
               
chr21:8351090-8351222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
130-267
               

               
Cow position:
               
chr21:13043821-13043961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
130-288
               

               
Cow position:
               
chr21:41041152-41040983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
130-290
               

               
Cow position:
               
chr21:40291545-40291709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
130-296
               

               
Cow position:
               
chr21:19240669-19240842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
130-296
               

               
Cow position:
               
chr21:41287592-41287762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
130-405
               

               
Cow position:
               
chr21:16152644-16152350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
130-420
               

               
Cow position:
               
chr21:22121706-22121426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
37, 65
               

               
Conread position:
               
130-462
               

               
Cow position:
               
chr21:12461766-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
130-465
               

               
Cow position:
               
chr21:29978560-29978903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
130-496
               

               
Cow position:
               
chr21:22193898-22194283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
130-511
               

               
Cow position:
               
chr21:40589276-40589671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 248
               

               
Conread position:
               
130-511
               

               
Cow position:
               
chr21:47464915-47465309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
130-515
               

               
Cow position:
               
chr21:17193544-17193952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
130-516
               

               
Cow position:
               
chr21:38449248-38449645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
130-517
               

               
Cow position:
               
chr21:31253736-31253341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 158
               

               
Conread position:
               
130-527
               

               
Cow position:
               
chr21:6051708-6051302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
130-539
               

               
Cow position:
               
chr21:45329750-45330158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
130-584
               

               
Cow position:
               
chr21:6713320-6713800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 232
               

               
Conread position:
               
130-588
               

               
Cow position:
               
chr21:34654274-34653822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
130-589
               

               
Cow position:
               
chr21:641788-641318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
130-589
               

               
Cow position:
               
chr21:11644762-11645251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 262
               

               
Conread position:
               
130-594
               

               
Cow position:
               
chr21:36763266-36762782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 292
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr21:18568433-18568921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 430
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr21:23672950-23672474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 345
               

               
Conread position:
               
131-293
               

               
Cow position:
               
chr21:11057681-11057843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
131-374
               

               
Cow position:
               
chr21:7377726-7377981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
131-461
               

               
Cow position:
               
chr21:20153154-20152810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 49
               

               
Conread position:
               
131-595
               

               
Cow position:
               
chr21:37706215-37706689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
132-262
               

               
Cow position:
               
chr21:9346620-9346487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
132-516
               

               
Cow position:
               
chr21:3763546-3763930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
133-247
               

               
Cow position:
               
chr21:3015984-3016102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
133-262
               

               
Cow position:
               
chr21:27409534-27409667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
133-275
               

               
Cow position:
               
chr21:24875553-24875404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
133-291
               

               
Cow position:
               
chr21:71787-71623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
133-296
               

               
Cow position:
               
chr21:34268746-34268904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
133-316
               

               
Cow position:
               
chr21:29658475-29658285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
133-334
               

               
Cow position:
               
chr21:6388197-6387988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
133-354
               

               
Cow position:
               
chr21:8349526-8349296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
133-467
               

               
Cow position:
               
chr21:13713632-13713987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
24, 262
               

               
Conread position:
               
133-504
               

               
Cow position:
               
chr21:9990712-9990333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
133-520
               

               
Cow position:
               
chr21:14464787-14464380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 195
               

               
Conread position:
               
133-524
               

               
Cow position:
               
chr21:27521140-27521526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
133-573
               

               
Cow position:
               
chr21:19615374-19614923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
133-589
               

               
Cow position:
               
chr21:17642788-17643229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
133-589
               

               
Cow position:
               
chr21:37480165-37479693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 260
               

               
Conread position:
               
133-595
               

               
Cow position:
               
chr21:29213954-29214427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 217
               

               
Conread position:
               
134-292
               

               
Cow position:
               
chr21:16498715-16498554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
134-321
               

               
Cow position:
               
chr21:36508433-36508242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
134-401
               

               
Cow position:
               
chr21:47719104-47719376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
134-488
               

               
Cow position:
               
chr21:10114133-10114493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 250
               

               
Conread position:
               
134-521
               

               
Cow position:
               
chr21:3360816-3361212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 125
               

               
Conread position:
               
134-529
               

               
Cow position:
               
chr21:23568425-23568003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
135-301
               

               
Cow position:
               
chr21:46612601-46612767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
135-454
               

               
Cow position:
               
chr21:34151779-34151450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
136-263
               

               
Cow position:
               
chr21:29418767-29418636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
136-277
               

               
Cow position:
               
chr21:14228083-14228230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
136-402
               

               
Cow position:
               
chr21:27429648-27429388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
136-520
               

               
Cow position:
               
chr21:17455581-17455188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
136-528
               

               
Cow position:
               
chr21:19259014-19258621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 203
               

               
Conread position:
               
136-585
               

               
Cow position:
               
chr21:3585170-3585618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 188
               

               
Conread position:
               
137-275
               

               
Cow position:
               
chr21:8240505-8240364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
137-276
               

               
Cow position:
               
chr21:37928843-37928700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
137-292
               

               
Cow position:
               
chr21:8213085-8213243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
137-293
               

               
Cow position:
               
chr21:8545829-8545984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
137-294
               

               
Cow position:
               
chr21:41610368-41610200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
137-321
               

               
Cow position:
               
chr21:13588953-13588763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
137-352
               

               
Cow position:
               
chr21:6317494-6317710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
137-365
               

               
Cow position:
               
chr21:36695896-36696133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
137-374
               

               
Cow position:
               
chr21:17890494-17890251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
137-404
               

               
Cow position:
               
chr21:10978755-10979021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
137-435
               

               
Cow position:
               
chr21:12916227-12916536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
137-449
               

               
Cow position:
               
chr21:21686609-21686289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
137-460
               

               
Cow position:
               
chr21:17874999-17875332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
137-464
               

               
Cow position:
               
chr21:19674000-19673674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
137-465
               

               
Cow position:
               
chr21:9301416-9301067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
137-478
               

               
Cow position:
               
chr21:9477355-9477004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
137-512
               

               
Cow position:
               
chr21:14452428-14452041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
137-522
               

               
Cow position:
               
chr21:13738746-13738372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
137-525
               

               
Cow position:
               
chr21:9311246-9310841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
137-526
               

               
Cow position:
               
chr21:11027166-11027573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
137-527
               

               
Cow position:
               
chr21:3818404-3818012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 291
               

               
Conread position:
               
137-527
               

               
Cow position:
               
chr21:19083394-19083804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
137-535
               

               
Cow position:
               
chr21:23535903-23535501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
137-551
               

               
Cow position:
               
chr21:40168432-40168836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
137-589
               

               
Cow position:
               
chr21:37299658-37299199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 201
               

               
Conread position:
               
137-595
               

               
Cow position:
               
chr21:938211-937780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
137-595
               

               
Cow position:
               
chr21:6624350-6623876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
137-595
               

               
Cow position:
               
chr21:41156064-41155590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
138-268
               

               
Cow position:
               
chr21:40059223-40059087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
138-371
               

               
Cow position:
               
chr21:19059899-19060136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
32, 125
               

               
Conread position:
               
138-462
               

               
Cow position:
               
chr21:11360219-11359899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
138-516
               

               
Cow position:
               
chr21:10118759-10118360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
138-569
               

               
Cow position:
               
chr21:13127906-13128340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
138-585
               

               
Cow position:
               
chr21:44251648-44252090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 174
               

               
Conread position:
               
138-586
               

               
Cow position:
               
chr21:19952349-19952798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
138-594
               

               
Cow position:
               
chr21:27341402-27341861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
138-595
               

               
Cow position:
               
chr21:10514994-10514540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
139-383
               

               
Cow position:
               
chr21:18059770-18060016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
139-386
               

               
Cow position:
               
chr21:10292685-10292428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
139-405
               

               
Cow position:
               
chr21:36910931-36910658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chr21:22210052-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 169
               

               
Conread position:
               
139-422
               

               
Cow position:
               
chr21:16914970-16914677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
139-447
               

               
Cow position:
               
chr21:30222539-30222218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
26, 217
               

               
Conread position:
               
139-589
               

               
Cow position:
               
chr21:42501243-42500765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 252
               

               
Conread position:
               
139-595
               

               
Cow position:
               
chr21:28733721-28734184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
139-595
               

               
Cow position:
               
chr21:48637564-48638018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
140-289
               

               
Cow position:
               
chr21:713136-712980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
140-416
               

               
Cow position:
               
chr21:30835556-30835270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
140-478
               

               
Cow position:
               
chr21:24642705-24642364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
140-481
               

               
Cow position:
               
chr21:18800341-18800686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
16, 183
               

               
Conread position:
               
140-554
               

               
Cow position:
               
chr21:23321885-23322312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 211
               

               
Conread position:
               
140-589
               

               
Cow position:
               
chr21:29069133-29069594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 250
               

               
Conread position:
               
140-589
               

               
Cow position:
               
chr21:33264037-33263585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 195
               

               
Conread position:
               
140-595
               

               
Cow position:
               
chr21:11739927-11740403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
140-595
               

               
Cow position:
               
chr21:44565531-44565977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
141-444
               

               
Cow position:
               
chr21:25628720-25629032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
142-288
               

               
Cow position:
               
chr21:30980387-30980538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
142-289
               

               
Cow position:
               
chr21:22939961-22939805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
142-522
               

               
Cow position:
               
chr21:18940391-18940756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
142-527
               

               
Cow position:
               
chr21:8452095-8451695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 198
               

               
Conread position:
               
142-575
               

               
Cow position:
               
chr21:49699851-49700288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
142-582
               

               
Cow position:
               
chr21:45473568-45474014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 181
               

               
Conread position:
               
142-595
               

               
Cow position:
               
chr21:15584230-15584671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
142-595
               

               
Cow position:
               
chr21:28989803-28989347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
143-285
               

               
Cow position:
               
chr21:42562816-42562674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 114
               

               
Conread position:
               
143-295
               

               
Cow position:
               
chr21:41918052-41918210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
143-514
               

               
Cow position:
               
chr21:32559175-32559545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 169
               

               
Conread position:
               
143-520
               

               
Cow position:
               
chr21:29001967-29002359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
143-595
               

               
Cow position:
               
chr21:15976822-15976369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
145-296
               

               
Cow position:
               
chr21:41046992-41046838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
145-595
               

               
Cow position:
               
chr21:33563191-33562742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
146-346
               

               
Cow position:
               
chr21:38720434-38720228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
146-480
               

               
Cow position:
               
chr21:17690381-17690043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
146-595
               

               
Cow position:
               
chr21:17433083-17433524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
146-595
               

               
Cow position:
               
chr21:28429631-28429178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 235
               

               
Conread position:
               
147-362
               

               
Cow position:
               
chr21:44860934-44861153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
147-431
               

               
Cow position:
               
chr21:22465376-22465090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
147-507
               

               
Cow position:
               
chr21:37344915-37345286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 121
               

               
Conread position:
               
147-589
               

               
Cow position:
               
chr21:30990105-30990534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
148-517
               

               
Cow position:
               
chr21:1591731-1591357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
150-393
               

               
Cow position:
               
chr21:6758524-6758277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
151-263
               

               
Cow position:
               
chr21:19935583-19935468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
151-284
               

               
Cow position:
               
chr21:13225897-13225758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
151-292
               

               
Cow position:
               
chr21:26838053-26837914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
151-506
               

               
Cow position:
               
chr21:28191214-28190845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
9, 200
               

               
Conread position:
               
151-595
               

               
Cow position:
               
chr21:26647834-26648276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
152-481
               

               
Cow position:
               
chr21:2809982-2810299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 230
               

               
Conread position:
               
152-507
               

               
Cow position:
               
chr21:15611320-15610971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
152-591
               

               
Cow position:
               
chr21:44515441-44514997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
153-304
               

               
Cow position:
               
chr21:7681276-7681119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
153-398
               

               
Cow position:
               
chr21:45262631-45262886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 176
               

               
Conread position:
               
153-490
               

               
Cow position:
               
chr21:9028794-9028454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
153-513
               

               
Cow position:
               
chr21:13365521-13365151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
153-587
               

               
Cow position:
               
chr21:30606917-30607367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
153-589
               

               
Cow position:
               
chr21:31691661-31691215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 233
               

               
Conread position:
               
153-595
               

               
Cow position:
               
chr21:724710-725162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
153-595
               

               
Cow position:
               
chr21:44671923-44671481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
154-282
               

               
Cow position:
               
chr21:7493095-7493222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
154-340
               

               
Cow position:
               
chr21:17063099-17062919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 146
               

               
Conread position:
               
154-450
               

               
Cow position:
               
chr21:12723328-12723030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
155-286
               

               
Cow position:
               
chr21:42236623-42236490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
155-396
               

               
Cow position:
               
chr21:40266298-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
155-403
               

               
Cow position:
               
chr21:47713833-47714086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
155-436
               

               
Cow position:
               
chr21:21077777-21077490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
155-492
               

               
Cow position:
               
chr21:10001252-10000912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 231
               

               
Conread position:
               
155-493
               

               
Cow position:
               
chr21:21169319-21169664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 253
               

               
Conread position:
               
155-495
               

               
Cow position:
               
chr21:27145814-27146163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
155-524
               

               
Cow position:
               
chr21:41597988-41597614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
155-588
               

               
Cow position:
               
chr21:396044-395613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
155-594
               

               
Cow position:
               
chr21:5153797-5153346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr21:5567163-5566719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr21:25345038-25344606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 149
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr21:25383203-25382726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 248
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr21:28442909-28442462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
156-296
               

               
Cow position:
               
chr21:7584026-7583880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
156-321
               

               
Cow position:
               
chr21:1764703-1764863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr21:471850-471638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
156-582
               

               
Cow position:
               
chr21:20160852-20160425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 213
               

               
Conread position:
               
157-296
               

               
Cow position:
               
chr21:34482941-34483075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
157-356
               

               
Cow position:
               
chr21:46132749-46132550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
28, 174
               

               
Conread position:
               
157-439
               

               
Cow position:
               
chr21:2657984-2657704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
157-519
               

               
Cow position:
               
chr21:21077484-21077133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
157-595
               

               
Cow position:
               
chr21:18289833-18289391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
157-595
               

               
Cow position:
               
chr21:42413922-42414371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 205
               

               
Conread position:
               
158-278
               

               
Cow position:
               
chr21:19927093-19927215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
158-346
               

               
Cow position:
               
chr21:40192131-40192325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
158-381
               

               
Cow position:
               
chr21:38267888-38268098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
158-386
               

               
Cow position:
               
chr21:11779368-11779592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
158-411
               

               
Cow position:
               
chr21:7823538-7823289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
158-501
               

               
Cow position:
               
chr21:8235388-8235722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
158-520
               

               
Cow position:
               
chr21:48176993-48176629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
159-294
               

               
Cow position:
               
chr21:12207629-12207770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
160-421
               

               
Cow position:
               
chr21:17009152-17008884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 201
               

               
Conread position:
               
160-595
               

               
Cow position:
               
chr21:47760940-47760505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
161-374
               

               
Cow position:
               
chr21:47363563-47363790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
162-520
               

               
Cow position:
               
chr21:28955671-28955325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
162-588
               

               
Cow position:
               
chr21:34659178-34658769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
163-282
               

               
Cow position:
               
chr21:35647659-35647783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
163-513
               

               
Cow position:
               
chr21:33791213-33791558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 105
               

               
Conread position:
               
163-595
               

               
Cow position:
               
chr21:45915549-45915976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
164-595
               

               
Cow position:
               
chr21:2679716-2679287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 58
               

               
Conread position:
               
164-595
               

               
Cow position:
               
chr21:46912712-46912272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 267
               

               
Conread position:
               
166-315
               

               
Cow position:
               
chr21:23460299-23460147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
166-436
               

               
Cow position:
               
chr21:36789962-36789686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
19, 204
               

               
Conread position:
               
166-595
               

               
Cow position:
               
chr21:25127769-25127338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 183
               

               
Conread position:
               
167-301
               

               
Cow position:
               
chr21:8231513-8231651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
171-520
               

               
Cow position:
               
chr21:45330446-45330805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
173-293
               

               
Cow position:
               
chr21:17695507-17695630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
174-554
               

               
Cow position:
               
chr21:41878627-41878245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
175-595
               

               
Cow position:
               
chr21:4998338-4998757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 128
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr21:17175291-17174956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
176-589
               

               
Cow position:
               
chr21:20044608-20045033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 169
               

               
Conread position:
               
177-508
               

               
Cow position:
               
chr21:18842083-18842423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 194
               

               
Conread position:
               
181-464
               

               
Cow position:
               
chr21:11251019-11250725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 117
               

               
Conread position:
               
183-404
               

               
Cow position:
               
chr21:40432593-40432368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
50, 149
               

               
Conread position:
               
183-520
               

               
Cow position:
               
chr21:18844864-18845212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
49, 205
               

               
Conread position:
               
183-591
               

               
Cow position:
               
chr21:34390827-34391234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 202
               

               
Conread position:
               
183-595
               

               
Cow position:
               
chr21:43357108-43357533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
184-594
               

               
Cow position:
               
chr21:35897479-35897892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 143
               

               
Conread position:
               
185-403
               

               
Cow position:
               
chr21:46141194-46140962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
185-412
               

               
Cow position:
               
chr21:17364334-17364564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 109
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr21:18155420-18155681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
48, 256
               

               
Conread position:
               
185-451
               

               
Cow position:
               
chr21:20260173-20260448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 202
               

               
Conread position:
               
185-506
               

               
Cow position:
               
chr21:46144105-46143760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 240
               

               
Conread position:
               
185-545
               

               
Cow position:
               
chr21:10007493-10007863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
185-585
               

               
Cow position:
               
chr21:42540076-42540482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 141
               

               
Conread position:
               
185-588
               

               
Cow position:
               
chr21:16187661-16188060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
185-595
               

               
Cow position:
               
chr21:4080494-4080082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
185-595
               

               
Cow position:
               
chr21:13048047-13048468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 189
               

               
Conread position:
               
189-495
               

               
Cow position:
               
chr21:10608321-10608627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
190-595
               

               
Cow position:
               
chr21:19363318-19363722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 199
               

               
Conread position:
               
192-427
               

               
Cow position:
               
chr21:2260227-2260461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:8618403-8618070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
192-589
               

               
Cow position:
               
chr21:11227822-11228220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 195
               

               
Conread position:
               
192-595
               

               
Cow position:
               
chr21:38867448-38867839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
192-595
               

               
Cow position:
               
chr21:40786816-40786399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr21:17929700-17929907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
194-410
               

               
Cow position:
               
chr21:9036438-9036209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
194-426
               

               
Cow position:
               
chr21:9697943-9698189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
194-588
               

               
Cow position:
               
chr21:39664261-39664638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
194-595
               

               
Cow position:
               
chr21:45151492-45151903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
196-595
               

               
Cow position:
               
chr21:28512649-28512269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
197-515
               

               
Cow position:
               
chr21:10601241-10601560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 147
               

               
Conread position:
               
198-554
               

               
Cow position:
               
chr21:27123988-27124359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 167
               

               
Conread position:
               
201-405
               

               
Cow position:
               
chr21:10858937-10858735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
201-412
               

               
Cow position:
               
chr21:11198018-11198237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
29, 187
               

               
Conread position:
               
201-482
               

               
Cow position:
               
chr21:13840456-13840164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
201-588
               

               
Cow position:
               
chr21:33729560-33729168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 143
               

               
Conread position:
               
201-595
               

               
Cow position:
               
chr21:23899677-23900079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 81
               

               
Conread position:
               
201-595
               

               
Cow position:
               
chr21:27607229-27607635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
201-595
               

               
Cow position:
               
chr21:28477759-28477353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 192
               

               
Conread position:
               
203-514
               

               
Cow position:
               
chr21:19174835-19174512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
204-421
               

               
Cow position:
               
chr21:6017753-6017519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
204-528
               

               
Cow position:
               
chr21:3498621-3498293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
206-399
               

               
Cow position:
               
chr21:33359918-33360109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
94, 10
               

               
Conread position:
               
206-436
               

               
Cow position:
               
chr21:13519305-13519083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
206-465
               

               
Cow position:
               
chr21:45439113-45439391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
206-567
               

               
Cow position:
               
chr21:5636595-5636965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 177
               

               
Conread position:
               
207-585
               

               
Cow position:
               
chr21:10967356-10966971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
208-471
               

               
Cow position:
               
chr21:38664762-38664494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
208-552
               

               
Cow position:
               
chr21:8351193-8351530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
209-595
               

               
Cow position:
               
chr21:10727399-10727009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 169
               

               
Conread position:
               
210-595
               

               
Cow position:
               
chr21:36162838-36163235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
211-589
               

               
Cow position:
               
chr21:3813370-3813733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
214-511
               

               
Cow position:
               
chr21:6102148-6102457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 138
               

               
Conread position:
               
214-595
               

               
Cow position:
               
chr21:24222420-24222813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 158
               

               
Conread position:
               
215-490
               

               
Cow position:
               
chr21:6765977-6765714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
215-595
               

               
Cow position:
               
chr21:24607502-24607113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
216-567
               

               
Cow position:
               
chr21:13409716-13410067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
217-409
               

               
Cow position:
               
chr21:13495657-13495455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 163
               

               
Conread position:
               
224-505
               

               
Cow position:
               
chr21:46829168-46829451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
226-418
               

               
Cow position:
               
chr21:8527383-8527571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
226-495
               

               
Cow position:
               
chr21:9873060-9872796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
227-595
               

               
Cow position:
               
chr21:11640122-11639749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
227-595
               

               
Cow position:
               
chr21:28882239-28881877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 175
               

               
Conread position:
               
228-589
               

               
Cow position:
               
chr21:20925405-20925771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
229-392
               

               
Cow position:
               
chr21:19210812-19210646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 144
               

               
Conread position:
               
229-436
               

               
Cow position:
               
chr21:34722690-34722897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
67, 135
               

               
Conread position:
               
229-527
               

               
Cow position:
               
chr21:7068150-7067840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
229-589
               

               
Cow position:
               
chr21:44403-44051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 162
               

               
Conread position:
               
229-595
               

               
Cow position:
               
chr21:32536075-32535706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
230-520
               

               
Cow position:
               
chr21:24765380-24765087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
230-524
               

               
Cow position:
               
chr21:3380981-3381282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 159
               

               
Conread position:
               
230-595
               

               
Cow position:
               
chr21:9847913-9848263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
178, 59
               

               
Conread position:
               
230-595
               

               
Cow position:
               
chr21:44109100-44108737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 105
               

               
Conread position:
               
230-595
               

               
Cow position:
               
chr21:47802160-47802534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
231-421
               

               
Cow position:
               
chr21:5985222-5985415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
231-588
               

               
Cow position:
               
chr21:16612721-16612364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
232-429
               

               
Cow position:
               
chr21:9979875-9980069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 120
               

               
Conread position:
               
237-519
               

               
Cow position:
               
chr21:39450071-39450364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
237-595
               

               
Cow position:
               
chr21:5454901-5455258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 177
               

               
Conread position:
               
237-595
               

               
Cow position:
               
chr21:6764610-6764974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 222
               

               
Conread position:
               
238-462
               

               
Cow position:
               
chr21:2294072-2293854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
67, 139
               

               
Conread position:
               
238-595
               

               
Cow position:
               
chr21:363722-363383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 61
               

               
Conread position:
               
242-428
               

               
Cow position:
               
chr21:29224775-29224966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
242-439
               

               
Cow position:
               
chr21:42131509-42131716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
242-595
               

               
Cow position:
               
chr21:13898273-13897921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 142
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr21:34737114-34736894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
243-591
               

               
Cow position:
               
chr21:1464314-1463965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 259
               

               
Conread position:
               
243-595
               

               
Cow position:
               
chr21:8985636-8985277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 111
               

               
Conread position:
               
246-396
               

               
Cow position:
               
chr21:25817900-25817752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
246-510
               

               
Cow position:
               
chr21:4268946-4268686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
131, 45
               

               
Conread position:
               
247-519
               

               
Cow position:
               
chr21:35569304-35569580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
45, 115
               

               
Conread position:
               
247-595
               

               
Cow position:
               
chr21:2785696-2786064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
247-595
               

               
Cow position:
               
chr21:5137407-5137779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
247-595
               

               
Cow position:
               
chr21:26829183-26829507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
247-595
               

               
Cow position:
               
chr21:27743829-27743469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 222
               

               
Conread position:
               
247-595
               

               
Cow position:
               
chr21:28617671-28617330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 218
               

               
Conread position:
               
247-595
               

               
Cow position:
               
chr21:43240945-43240587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
249-516
               

               
Cow position:
               
chr21:3047755-3047493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
249-593
               

               
Cow position:
               
chr21:42913665-42914016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
252-520
               

               
Cow position:
               
chr21:34835354-34835620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
36, 134
               

               
Conread position:
               
252-541
               

               
Cow position:
               
chr21:31676574-31676284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 198
               

               
Conread position:
               
252-595
               

               
Cow position:
               
chr21:16910136-16909783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 234
               

               
Conread position:
               
253-588
               

               
Cow position:
               
chr21:45867008-45866671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
253-594
               

               
Cow position:
               
chr21:17714392-17714042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
37, 129
               

               
Conread position:
               
254-589
               

               
Cow position:
               
chr21:9862569-9862887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
255-589
               

               
Cow position:
               
chr21:21480112-21480445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
256-461
               

               
Cow position:
               
chr21:39809965-39809762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
256-504
               

               
Cow position:
               
chr21:31038414-31038668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 128
               

               
Conread position:
               
257-577
               

               
Cow position:
               
chr21:911896-912218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
266-595
               

               
Cow position:
               
chr21:42170695-42170359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
268-436
               

               
Cow position:
               
chr21:21143960-21143790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
284-594
               

               
Cow position:
               
chr21:5344699-5344390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
285-494
               

               
Cow position:
               
chr21:19936897-19937103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
90, 71
               

               
Conread position:
               
285-588
               

               
Cow position:
               
chr21:12617174-12616877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 67
               

               
Conread position:
               
286-595
               

               
Cow position:
               
chr21:28993585-28993898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
294-595
               

               
Cow position:
               
chr21:10882467-10882154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
299-595
               

               
Cow position:
               
chr21:21216120-21216413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 77
               

               
Conread position:
               
300-434
               

               
Cow position:
               
chr21:46469992-46469859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
300-494
               

               
Cow position:
               
chr21:712949-712764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
300-527
               

               
Cow position:
               
chr21:37361454-37361678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
192, 76
               

               
Conread position:
               
300-589
               

               
Cow position:
               
chr21:17434296-17434586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
138, 76
               

               
Conread position:
               
300-595
               

               
Cow position:
               
chr21:18494991-18494706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 76
               

               
Conread position:
               
300-595
               

               
Cow position:
               
chr21:21968339-21968046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 76
               

               
Conread position:
               
300-595
               

               
Cow position:
               
chr21:48484425-48484712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 108
               

               
Conread position:
               
301-553
               

               
Cow position:
               
chr21:9278402-9278138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
302-589
               

               
Cow position:
               
chr21:40058825-40058539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 73
               

               
Conread position:
               
304-518
               

               
Cow position:
               
chr21:9998699-9998916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
133, 126
               

               
Conread position:
               
304-575
               

               
Cow position:
               
chr21:42190157-42190419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 101
               

               
Conread position:
               
304-588
               

               
Cow position:
               
chr21:13751408-13751122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
304-594
               

               
Cow position:
               
chr21:17412281-17412563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 51
               

               
Conread position:
               
305-595
               

               
Cow position:
               
chr21:33419706-33419988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
306-589
               

               
Cow position:
               
chr21:13703669-13703952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
307-515
               

               
Cow position:
               
chr21:13850050-13850263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 158
               

               
Conread position:
               
309-535
               

               
Cow position:
               
chr21:13303832-13303607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
311-514
               

               
Cow position:
               
chr21:40065303-40065506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
321-516
               

               
Cow position:
               
chr21:13163892-13163700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 55
               

               
Conread position:
               
329-595
               

               
Cow position:
               
chr21:16789721-16789449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
331-495
               

               
Cow position:
               
chr21:49353193-49353030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 45
               

               
Conread position:
               
335-595
               

               
Cow position:
               
chr21:31159250-31158983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 238
               

               
Conread position:
               
344-516
               

               
Cow position:
               
chr21:9334282-9334452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
151, 69
               
Show alignments to all cow chromosomes.