Non-Coding RNA Search

Cow genome map


           Conread name:
           rssp06_d15.y1
        

               Conread position:
               66-503
               

               Cow position:
               chr21:17184201-17183741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 221
               

               Conread position:
               69-595
               

               Cow position:
               chr21:38121364-38120831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 79
               

               Conread position:
               70-591
               

               Cow position:
               chr21:5898127-5898663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 326
               

               Conread position:
               74-428
               

               Cow position:
               chr21:10673383-10673027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 132
               

               Conread position:
               75-520
               

               Cow position:
               chr21:45356088-45355639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               76-289
               

               Cow position:
               chr21:742547-742325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               18, 173
               

               Conread position:
               76-528
               

               Cow position:
               chr21:32339475-32339940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 10
               

               Conread position:
               76-595
               

               Cow position:
               chr21:27229533-27230064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               77-237
               

               Cow position:
               chr21:18495484-18495315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               60, 12
               

               Conread position:
               77-289
               

               Cow position:
               chr21:18135621-18135834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               19, 62
               

               Conread position:
               77-292
               

               Cow position:
               chr21:42145089-42144861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               53, 103
               

               Conread position:
               77-296
               

               Cow position:
               chr21:40475771-40475531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               60, 199
               

               Conread position:
               77-403
               

               Cow position:
               chr21:7394638-7394300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               50, 12
               

               Conread position:
               77-465
               

               Cow position:
               chr21:957939-957526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 122
               

               Conread position:
               77-504
               

               Cow position:
               chr21:802055-802475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 6
               

               Conread position:
               77-586
               

               Cow position:
               chr21:4400064-4399537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 204
               

               Conread position:
               77-586
               

               Cow position:
               chr21:30231448-30231963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 37
               

               Conread position:
               77-595
               

               Cow position:
               chr21:5238658-5238134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               353
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               63, 326
               

               Conread position:
               77-595
               

               Cow position:
               chr21:45970909-45971427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 337
               

               Conread position:
               78-274
               

               Cow position:
               chr21:25012336-25012135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               20, 28
               

               Conread position:
               78-343
               

               Cow position:
               chr21:44829509-44829783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               18, 44
               

               Conread position:
               78-490
               

               Cow position:
               chr21:28244736-28244310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 190
               

               Conread position:
               78-581
               

               Cow position:
               chr21:44825628-44826133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 70
               

               Conread position:
               79-271
               

               Cow position:
               chr21:31658886-31659091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               79-595
               

               Cow position:
               chr21:41974121-41974651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 308
               

               Conread position:
               81-359
               

               Cow position:
               chr21:17983236-17982939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               53, 5
               

               Conread position:
               81-376
               

               Cow position:
               chr21:28919265-28919578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               56, 118
               

               Conread position:
               81-462
               

               Cow position:
               chr21:8418659-8419041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               85, 45
               

               Conread position:
               81-522
               

               Cow position:
               chr21:22861258-22860803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 98
               

               Conread position:
               82-427
               

               Cow position:
               chr21:30236577-30236920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               48, 156
               

               Conread position:
               83-244
               

               Cow position:
               chr21:21159067-21158898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               83-258
               

               Cow position:
               chr21:30205116-30205302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               83-270
               

               Cow position:
               chr21:26735661-26735466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               55, 132
               

               Conread position:
               83-277
               

               Cow position:
               chr21:9905598-9905799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               83-283
               

               Cow position:
               chr21:25014775-25014982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               13, 105
               

               Conread position:
               83-289
               

               Cow position:
               chr21:31279517-31279294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               83-299
               

               Cow position:
               chr21:19359927-19360148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               10, 56
               

               Conread position:
               83-337
               

               Cow position:
               chr21:44724112-44724380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               54, 83
               

               Conread position:
               83-345
               

               Cow position:
               chr21:37235632-37235362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               19, 56
               

               Conread position:
               83-374
               

               Cow position:
               chr21:976884-977196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               13, 301
               

               Conread position:
               83-393
               

               Cow position:
               chr21:44214375-44214055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               74, 57
               

               Conread position:
               83-421
               

               Cow position:
               chr21:33580675-33580315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               53, 321
               

               Conread position:
               83-436
               

               Cow position:
               chr21:6909625-6909991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               60, 111
               

               Conread position:
               83-438
               

               Cow position:
               chr21:46551861-46552214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               38, 50
               

               Conread position:
               83-514
               

               Cow position:
               chr21:5427191-5426755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 109
               

               Conread position:
               83-524
               

               Cow position:
               chr21:41580005-41579550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 11
               

               Conread position:
               83-527
               

               Cow position:
               chr21:40134410-40133951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 98
               

               Conread position:
               83-569
               

               Cow position:
               chr21:38901027-38900527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 129
               

               Conread position:
               83-588
               

               Cow position:
               chr21:33982550-33983075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 305
               

               Conread position:
               83-589
               

               Cow position:
               chr21:17512038-17511513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 106
               

               Conread position:
               83-592
               

               Cow position:
               chr21:9939940-9940446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 59
               

               Conread position:
               83-595
               

               Cow position:
               chr21:12154389-12153861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 121
               

               Conread position:
               83-595
               

               Cow position:
               chr21:33996986-33997497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 39
               

               Conread position:
               85-309
               

               Cow position:
               chr21:24797917-24797676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               46, 223
               

               Conread position:
               86-229
               

               Cow position:
               chr21:9219280-9219139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               98, 64
               

               Conread position:
               86-260
               

               Cow position:
               chr21:2785240-2785419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               51, 155
               

               Conread position:
               86-341
               

               Cow position:
               chr21:8426690-8426427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               29, 10
               

               Conread position:
               86-346
               

               Cow position:
               chr21:28030540-28030264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               86-374
               

               Cow position:
               chr21:5464994-5464695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               45, 10
               

               Conread position:
               86-397
               

               Cow position:
               chr21:33413836-33414158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               33, 169
               

               Conread position:
               86-427
               

               Cow position:
               chr21:10561338-10561687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               35, 10
               

               Conread position:
               86-519
               

               Cow position:
               chr21:42135372-42135820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 10
               

               Conread position:
               86-585
               

               Cow position:
               chr21:46972904-46973397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 33
               

               Conread position:
               86-589
               

               Cow position:
               chr21:22718522-22719046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 151
               

               Conread position:
               87-301
               

               Cow position:
               chr21:37837818-37838040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               87-363
               

               Cow position:
               chr21:42209385-42209671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               83, 53
               

               Conread position:
               87-368
               

               Cow position:
               chr21:29014657-29014959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               87-540
               

               Cow position:
               chr21:30592054-30592515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 173
               

               Conread position:
               87-591
               

               Cow position:
               chr21:28924360-28923874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 262
               

               Conread position:
               87-595
               

               Cow position:
               chr21:643570-643065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 17
               

               Conread position:
               88-296
               

               Cow position:
               chr21:46451713-46451921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               98, 65
               

               Conread position:
               88-321
               

               Cow position:
               chr21:31159645-31159404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               43, 137
               

               Conread position:
               88-396
               

               Cow position:
               chr21:15543980-15544290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 30
               

               Conread position:
               88-426
               

               Cow position:
               chr21:20418447-20418787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 52
               

               Conread position:
               88-475
               

               Cow position:
               chr21:10823799-10823402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 52
               

               Conread position:
               88-589
               

               Cow position:
               chr21:3254392-3253912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               339
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               98, 50
               

               Conread position:
               88-595
               

               Cow position:
               chr21:3236762-3236260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 126
               

               Conread position:
               88-595
               

               Cow position:
               chr21:23587131-23586591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 305
               

               Conread position:
               88-595
               

               Cow position:
               chr21:30848689-30849216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 313
               

               Conread position:
               89-289
               

               Cow position:
               chr21:20318754-20318551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               14, 48
               

               Conread position:
               89-588
               

               Cow position:
               chr21:13089236-13089743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 13
               

               Conread position:
               89-595
               

               Cow position:
               chr21:28810017-28810521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 120
               

               Conread position:
               90-405
               

               Cow position:
               chr21:37014168-37014484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               50, 76
               

               Conread position:
               93-257
               

               Cow position:
               chr21:2294266-2294099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               40, 143
               

               Conread position:
               93-467
               

               Cow position:
               chr21:42007214-42007603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 175
               

               Conread position:
               95-295
               

               Cow position:
               chr21:7768678-7768470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               165
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               21, 62
               

               Conread position:
               95-396
               

               Cow position:
               chr21:1511538-1511219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 295
               

               Conread position:
               96-595
               

               Cow position:
               chr21:7581665-7582177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 295
               

               Conread position:
               98-595
               

               Cow position:
               chr21:7564069-7564594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 17
               

               Conread position:
               99-408
               

               Cow position:
               chr21:41107528-41107846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               29, 101
               

               Conread position:
               99-412
               

               Cow position:
               chr21:30217967-30218271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               41, 120
               

               Conread position:
               99-416
               

               Cow position:
               chr21:6998189-6997846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               99-427
               

               Cow position:
               chr21:8207005-8206669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 100
               

               Conread position:
               99-520
               

               Cow position:
               chr21:34740074-34739652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 39
               

               Conread position:
               99-595
               

               Cow position:
               chr21:9416489-9415971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 74
               

               Conread position:
               99-595
               

               Cow position:
               chr21:27863271-27863791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 86
               

               Conread position:
               99-595
               

               Cow position:
               chr21:46848885-46849391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 272
               

               Conread position:
               100-527
               

               Cow position:
               chr21:1059305-1058873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 15
               

               Conread position:
               100-583
               

               Cow position:
               chr21:14760804-14760325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 157
               

               Conread position:
               100-589
               

               Cow position:
               chr21:82306-81804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 61
               

               Conread position:
               101-589
               

               Cow position:
               chr21:32297287-32297768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 79
               

               Conread position:
               101-592
               

               Cow position:
               chr21:5392305-5392807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 52
               

               Conread position:
               102-500
               

               Cow position:
               chr21:18790335-18790733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 112
               

               Conread position:
               105-294
               

               Cow position:
               chr21:44591982-44592176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               9, 18
               

               Conread position:
               106-268
               

               Cow position:
               chr21:20548124-20548301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               106-369
               

               Cow position:
               chr21:21907201-21907476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               107-285
               

               Cow position:
               chr21:7221108-7221298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               20, 64
               

               Conread position:
               110-296
               

               Cow position:
               chr21:46470406-46470217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               5, 45
               

               Conread position:
               110-489
               

               Cow position:
               chr21:18064692-18065089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 91
               

               Conread position:
               110-595
               

               Cow position:
               chr21:32237503-32237028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 126
               

               Conread position:
               113-291
               

               Cow position:
               chr21:13164079-13163895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               113-405
               

               Cow position:
               chr21:30256054-30256350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               49, 116
               

               Conread position:
               113-554
               

               Cow position:
               chr21:27568952-27569395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 179
               

               Conread position:
               114-271
               

               Cow position:
               chr21:265837-265680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               70, 16
               

               Conread position:
               114-337
               

               Cow position:
               chr21:13036691-13036915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               70, 26
               

               Conread position:
               114-505
               

               Cow position:
               chr21:15911614-15911218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 26
               

               Conread position:
               115-333
               

               Cow position:
               chr21:29405009-29405226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               111, 35
               

               Conread position:
               115-595
               

               Cow position:
               chr21:4281664-4282136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 38
               

               Conread position:
               118-349
               

               Cow position:
               chr21:26753701-26753469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               66, 21
               

               Conread position:
               118-520
               

               Cow position:
               chr21:12801536-12801941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 44
               

               Conread position:
               118-561
               

               Cow position:
               chr21:11114922-11114467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               311
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               118-595
               

               Cow position:
               chr21:23800918-23801392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 20
               

               Conread position:
               120-296
               

               Cow position:
               chr21:9417945-9418124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               121-403
               

               Cow position:
               chr21:10410430-10410139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               215
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               121-512
               

               Cow position:
               chr21:47763910-47764301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 32
               

               Conread position:
               123-247
               

               Cow position:
               chr21:27744232-27744105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               61, 30
               

               Conread position:
               123-260
               

               Cow position:
               chr21:32272133-32271994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 115
               

               Conread position:
               123-261
               

               Cow position:
               chr21:8986229-8986088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               61, 30
               

               Conread position:
               123-451
               

               Cow position:
               chr21:47250-46911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 267
               

               Conread position:
               123-467
               

               Cow position:
               chr21:10004680-10005029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 22
               

               Conread position:
               123-479
               

               Cow position:
               chr21:10633433-10633796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 37
               

               Conread position:
               123-520
               

               Cow position:
               chr21:13584849-13585255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 182
               

               Conread position:
               123-570
               

               Cow position:
               chr21:42905192-42905622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 13
               

               Conread position:
               123-595
               

               Cow position:
               chr21:10264238-10263770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 13
               

               Conread position:
               124-494
               

               Cow position:
               chr21:47495449-47495827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               61, 12
               

               Conread position:
               125-284
               

               Cow position:
               chr21:6735984-6736146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               61, 21
               

               Conread position:
               125-595
               

               Cow position:
               chr21:39888533-39889016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 35
               

               Conread position:
               126-295
               

               Cow position:
               chr21:27677683-27677514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               126-371
               

               Cow position:
               chr21:41522208-41522456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               33, 148
               

               Conread position:
               126-374
               

               Cow position:
               chr21:868719-868977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 16
               

               Conread position:
               126-418
               

               Cow position:
               chr21:17559716-17560023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               27, 9
               

               Conread position:
               126-429
               

               Cow position:
               chr21:37789794-37790106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               60, 27
               

               Conread position:
               126-493
               

               Cow position:
               chr21:20589514-20589151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               126, 27
               

               Conread position:
               126-527
               

               Cow position:
               chr21:41621328-41620915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               126-554
               

               Cow position:
               chr21:15444882-15445310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 10
               

               Conread position:
               126-561
               

               Cow position:
               chr21:38918402-38917980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 10
               

               Conread position:
               126-582
               

               Cow position:
               chr21:39403320-39403797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               126-585
               

               Cow position:
               chr21:10070723-10071191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               126-585
               

               Cow position:
               chr21:36756821-36756353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               126-589
               

               Cow position:
               chr21:6834250-6833786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 10
               

               Conread position:
               126-595
               

               Cow position:
               chr21:19195961-19196440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 9
               

               Conread position:
               126-595
               

               Cow position:
               chr21:19767057-19766582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 10
               

               Conread position:
               128-296
               

               Cow position:
               chr21:42463491-42463657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               46, 25
               

               Conread position:
               128-346
               

               Cow position:
               chr21:14126477-14126264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 6
               

               Conread position:
               128-455
               

               Cow position:
               chr21:10538050-10538394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               245
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               22, 299
               

               Conread position:
               128-478
               

               Cow position:
               chr21:26245115-26244777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 25
               

               Conread position:
               129-243
               

               Cow position:
               chr21:40305147-40305027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               98
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               129-250
               

               Cow position:
               chr21:37361041-37361165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               55, 13
               

               Conread position:
               129-276
               

               Cow position:
               chr21:5341889-5342043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               129-289
               

               Cow position:
               chr21:36682527-36682363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               57, 32
               

               Conread position:
               129-293
               

               Cow position:
               chr21:30157600-30157770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               26, 41
               

               Conread position:
               129-294
               

               Cow position:
               chr21:30119902-30119727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               129-295
               

               Cow position:
               chr21:17265796-17265969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               29, 45
               

               Conread position:
               129-356
               

               Cow position:
               chr21:734793-734562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               30, 87
               

               Conread position:
               129-369
               

               Cow position:
               chr21:19514056-19513818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               27, 18
               

               Conread position:
               129-389
               

               Cow position:
               chr21:41140518-41140783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               55, 8
               

               Conread position:
               129-399
               

               Cow position:
               chr21:36910135-36909859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 156
               

               Conread position:
               129-404
               

               Cow position:
               chr21:28237504-28237794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               27, 124
               

               Conread position:
               129-433
               

               Cow position:
               chr21:23979982-23980290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 7
               

               Conread position:
               129-480
               

               Cow position:
               chr21:45920857-45921215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 18
               

               Conread position:
               129-485
               

               Cow position:
               chr21:27624903-27624551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 159
               

               Conread position:
               129-517
               

               Cow position:
               chr21:42841397-42841785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               129-520
               

               Cow position:
               chr21:18779770-18780167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 123
               

               Conread position:
               129-527
               

               Cow position:
               chr21:29485180-29484780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 24
               

               Conread position:
               129-556
               

               Cow position:
               chr21:33921-33489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 24
               

               Conread position:
               129-584
               

               Cow position:
               chr21:46264372-46263916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 32
               

               Conread position:
               129-585
               

               Cow position:
               chr21:33350945-33350483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 218
               

               Conread position:
               129-588
               

               Cow position:
               chr21:34010194-34010652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 39
               

               Conread position:
               129-589
               

               Cow position:
               chr21:42384711-42384242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 255
               

               Conread position:
               129-594
               

               Cow position:
               chr21:36795805-36795329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 24
               

               Conread position:
               129-595
               

               Cow position:
               chr21:16696575-16696098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 48
               

               Conread position:
               130-263
               

               Cow position:
               chr21:8351090-8351222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               32, 107
               

               Conread position:
               130-267
               

               Cow position:
               chr21:13043821-13043961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               51, 29
               

               Conread position:
               130-288
               

               Cow position:
               chr21:41041152-41040983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               22, 41
               

               Conread position:
               130-290
               

               Cow position:
               chr21:40291545-40291709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               130-296
               

               Cow position:
               chr21:19240669-19240842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               130-296
               

               Cow position:
               chr21:41287592-41287762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               54, 22
               

               Conread position:
               130-405
               

               Cow position:
               chr21:16152644-16152350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               130-420
               

               Cow position:
               chr21:22121706-22121426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               37, 65
               

               Conread position:
               130-462
               

               Cow position:
               chr21:12461766-12462109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 16
               

               Conread position:
               130-465
               

               Cow position:
               chr21:29978560-29978903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 17
               

               Conread position:
               130-496
               

               Cow position:
               chr21:22193898-22194283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               56, 7
               

               Conread position:
               130-511
               

               Cow position:
               chr21:40589276-40589671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 248
               

               Conread position:
               130-511
               

               Cow position:
               chr21:47464915-47465309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 77
               

               Conread position:
               130-515
               

               Cow position:
               chr21:17193544-17193952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               130-516
               

               Cow position:
               chr21:38449248-38449645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 34
               

               Conread position:
               130-517
               

               Cow position:
               chr21:31253736-31253341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 158
               

               Conread position:
               130-527
               

               Cow position:
               chr21:6051708-6051302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 197
               

               Conread position:
               130-539
               

               Cow position:
               chr21:45329750-45330158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 18
               

               Conread position:
               130-584
               

               Cow position:
               chr21:6713320-6713800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 232
               

               Conread position:
               130-588
               

               Cow position:
               chr21:34654274-34653822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 23
               

               Conread position:
               130-589
               

               Cow position:
               chr21:641788-641318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 16
               

               Conread position:
               130-589
               

               Cow position:
               chr21:11644762-11645251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 262
               

               Conread position:
               130-594
               

               Cow position:
               chr21:36763266-36762782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 292
               

               Conread position:
               130-595
               

               Cow position:
               chr21:18568433-18568921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 430
               

               Conread position:
               130-595
               

               Cow position:
               chr21:23672950-23672474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 345
               

               Conread position:
               131-293
               

               Cow position:
               chr21:11057681-11057843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               53, 22
               

               Conread position:
               131-374
               

               Cow position:
               chr21:7377726-7377981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               53, 22
               

               Conread position:
               131-461
               

               Cow position:
               chr21:20153154-20152810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 49
               

               Conread position:
               131-595
               

               Cow position:
               chr21:37706215-37706689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 29
               

               Conread position:
               132-262
               

               Cow position:
               chr21:9346620-9346487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               105
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               52, 10
               

               Conread position:
               132-516
               

               Cow position:
               chr21:3763546-3763930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               133-247
               

               Cow position:
               chr21:3015984-3016102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               133-262
               

               Cow position:
               chr21:27409534-27409667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               101
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               133-275
               

               Cow position:
               chr21:24875553-24875404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               133-291
               

               Cow position:
               chr21:71787-71623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               23, 48
               

               Conread position:
               133-296
               

               Cow position:
               chr21:34268746-34268904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               16, 58
               

               Conread position:
               133-316
               

               Cow position:
               chr21:29658475-29658285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               41, 79
               

               Conread position:
               133-334
               

               Cow position:
               chr21:6388197-6387988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               55, 27
               

               Conread position:
               133-354
               

               Cow position:
               chr21:8349526-8349296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               53, 20
               

               Conread position:
               133-467
               

               Cow position:
               chr21:13713632-13713987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               24, 262
               

               Conread position:
               133-504
               

               Cow position:
               chr21:9990712-9990333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 49
               

               Conread position:
               133-520
               

               Cow position:
               chr21:14464787-14464380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 195
               

               Conread position:
               133-524
               

               Cow position:
               chr21:27521140-27521526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 88
               

               Conread position:
               133-573
               

               Cow position:
               chr21:19615374-19614923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               133-589
               

               Cow position:
               chr21:17642788-17643229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 27
               

               Conread position:
               133-589
               

               Cow position:
               chr21:37480165-37479693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 260
               

               Conread position:
               133-595
               

               Cow position:
               chr21:29213954-29214427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 217
               

               Conread position:
               134-292
               

               Cow position:
               chr21:16498715-16498554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               134-321
               

               Cow position:
               chr21:36508433-36508242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               152
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               134-401
               

               Cow position:
               chr21:47719104-47719376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               22, 34
               

               Conread position:
               134-488
               

               Cow position:
               chr21:10114133-10114493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 250
               

               Conread position:
               134-521
               

               Cow position:
               chr21:3360816-3361212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 125
               

               Conread position:
               134-529
               

               Cow position:
               chr21:23568425-23568003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 19
               

               Conread position:
               135-301
               

               Cow position:
               chr21:46612601-46612767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               49, 26
               

               Conread position:
               135-454
               

               Cow position:
               chr21:34151779-34151450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 45
               

               Conread position:
               136-263
               

               Cow position:
               chr21:29418767-29418636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               136-277
               

               Cow position:
               chr21:14228083-14228230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               136-402
               

               Cow position:
               chr21:27429648-27429388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               20, 83
               

               Conread position:
               136-520
               

               Cow position:
               chr21:17455581-17455188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               267
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               19, 41
               

               Conread position:
               136-528
               

               Cow position:
               chr21:19259014-19258621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 203
               

               Conread position:
               136-585
               

               Cow position:
               chr21:3585170-3585618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 188
               

               Conread position:
               137-275
               

               Cow position:
               chr21:8240505-8240364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               137-276
               

               Cow position:
               chr21:37928843-37928700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               22, 11
               

               Conread position:
               137-292
               

               Cow position:
               chr21:8213085-8213243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               137-293
               

               Cow position:
               chr21:8545829-8545984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               47, 16
               

               Conread position:
               137-294
               

               Cow position:
               chr21:41610368-41610200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               137-321
               

               Cow position:
               chr21:13588953-13588763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               56, 16
               

               Conread position:
               137-352
               

               Cow position:
               chr21:6317494-6317710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               47, 16
               

               Conread position:
               137-365
               

               Cow position:
               chr21:36695896-36696133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               55, 25
               

               Conread position:
               137-374
               

               Cow position:
               chr21:17890494-17890251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               47, 22
               

               Conread position:
               137-404
               

               Cow position:
               chr21:10978755-10979021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               137-435
               

               Cow position:
               chr21:12916227-12916536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               57, 40
               

               Conread position:
               137-449
               

               Cow position:
               chr21:21686609-21686289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               137-460
               

               Cow position:
               chr21:17874999-17875332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 40
               

               Conread position:
               137-464
               

               Cow position:
               chr21:19674000-19673674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               49, 24
               

               Conread position:
               137-465
               

               Cow position:
               chr21:9301416-9301067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               56, 27
               

               Conread position:
               137-478
               

               Cow position:
               chr21:9477355-9477004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               55, 9
               

               Conread position:
               137-512
               

               Cow position:
               chr21:14452428-14452041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 24
               

               Conread position:
               137-522
               

               Cow position:
               chr21:13738746-13738372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 11
               

               Conread position:
               137-525
               

               Cow position:
               chr21:9311246-9310841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               280
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               137-526
               

               Cow position:
               chr21:11027166-11027573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               280
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               137-527
               

               Cow position:
               chr21:3818404-3818012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 291
               

               Conread position:
               137-527
               

               Cow position:
               chr21:19083394-19083804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               282
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               56, 36
               

               Conread position:
               137-535
               

               Cow position:
               chr21:23535903-23535501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 24
               

               Conread position:
               137-551
               

               Cow position:
               chr21:40168432-40168836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               137-589
               

               Cow position:
               chr21:37299658-37299199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 201
               

               Conread position:
               137-595
               

               Cow position:
               chr21:938211-937780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 16
               

               Conread position:
               137-595
               

               Cow position:
               chr21:6624350-6623876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               137-595
               

               Cow position:
               chr21:41156064-41155590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 24
               

               Conread position:
               138-268
               

               Cow position:
               chr21:40059223-40059087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               49, 22
               

               Conread position:
               138-371
               

               Cow position:
               chr21:19059899-19060136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               32, 125
               

               Conread position:
               138-462
               

               Cow position:
               chr21:11360219-11359899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 15
               

               Conread position:
               138-516
               

               Cow position:
               chr21:10118759-10118360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 13
               

               Conread position:
               138-569
               

               Cow position:
               chr21:13127906-13128340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               138-585
               

               Cow position:
               chr21:44251648-44252090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 174
               

               Conread position:
               138-586
               

               Cow position:
               chr21:19952349-19952798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               295
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               46, 37
               

               Conread position:
               138-594
               

               Cow position:
               chr21:27341402-27341861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 23
               

               Conread position:
               138-595
               

               Cow position:
               chr21:10514994-10514540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 9
               

               Conread position:
               139-383
               

               Cow position:
               chr21:18059770-18060016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               54, 38
               

               Conread position:
               139-386
               

               Cow position:
               chr21:10292685-10292428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               7, 39
               

               Conread position:
               139-405
               

               Cow position:
               chr21:36910931-36910658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               45, 20
               

               Conread position:
               139-413
               

               Cow position:
               chr21:22210052-22210333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               8, 169
               

               Conread position:
               139-422
               

               Cow position:
               chr21:16914970-16914677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               23, 33
               

               Conread position:
               139-447
               

               Cow position:
               chr21:30222539-30222218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               232
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               26, 217
               

               Conread position:
               139-589
               

               Cow position:
               chr21:42501243-42500765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 252
               

               Conread position:
               139-595
               

               Cow position:
               chr21:28733721-28734184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 14
               

               Conread position:
               139-595
               

               Cow position:
               chr21:48637564-48638018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 40
               

               Conread position:
               140-289
               

               Cow position:
               chr21:713136-712980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               140-416
               

               Cow position:
               chr21:30835556-30835270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 114
               

               Conread position:
               140-478
               

               Cow position:
               chr21:24642705-24642364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 51
               

               Conread position:
               140-481
               

               Cow position:
               chr21:18800341-18800686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               247
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               16, 183
               

               Conread position:
               140-554
               

               Cow position:
               chr21:23321885-23322312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 211
               

               Conread position:
               140-589
               

               Cow position:
               chr21:29069133-29069594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 250
               

               Conread position:
               140-589
               

               Cow position:
               chr21:33264037-33263585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 195
               

               Conread position:
               140-595
               

               Cow position:
               chr21:11739927-11740403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 69
               

               Conread position:
               140-595
               

               Cow position:
               chr21:44565531-44565977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 13
               

               Conread position:
               141-444
               

               Cow position:
               chr21:25628720-25629032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 51
               

               Conread position:
               142-288
               

               Cow position:
               chr21:30980387-30980538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               142-289
               

               Cow position:
               chr21:22939961-22939805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               142-522
               

               Cow position:
               chr21:18940391-18940756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               270
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               142-527
               

               Cow position:
               chr21:8452095-8451695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               285
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               42, 198
               

               Conread position:
               142-575
               

               Cow position:
               chr21:49699851-49700288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 7
               

               Conread position:
               142-582
               

               Cow position:
               chr21:45473568-45474014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               142-595
               

               Cow position:
               chr21:15584230-15584671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 20
               

               Conread position:
               142-595
               

               Cow position:
               chr21:28989803-28989347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 74
               

               Conread position:
               143-285
               

               Cow position:
               chr21:42562816-42562674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               41, 114
               

               Conread position:
               143-295
               

               Cow position:
               chr21:41918052-41918210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               143-514
               

               Cow position:
               chr21:32559175-32559545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 169
               

               Conread position:
               143-520
               

               Cow position:
               chr21:29001967-29002359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               143-595
               

               Cow position:
               chr21:15976822-15976369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 62
               

               Conread position:
               145-296
               

               Cow position:
               chr21:41046992-41046838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               41, 8
               

               Conread position:
               145-595
               

               Cow position:
               chr21:33563191-33562742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 75
               

               Conread position:
               146-346
               

               Cow position:
               chr21:38720434-38720228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               38, 22
               

               Conread position:
               146-480
               

               Cow position:
               chr21:17690381-17690043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 62
               

               Conread position:
               146-595
               

               Cow position:
               chr21:17433083-17433524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 31
               

               Conread position:
               146-595
               

               Cow position:
               chr21:28429631-28429178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 235
               

               Conread position:
               147-362
               

               Cow position:
               chr21:44860934-44861153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               37, 89
               

               Conread position:
               147-431
               

               Cow position:
               chr21:22465376-22465090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               9, 30
               

               Conread position:
               147-507
               

               Cow position:
               chr21:37344915-37345286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 121
               

               Conread position:
               147-589
               

               Cow position:
               chr21:30990105-30990534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 15
               

               Conread position:
               148-517
               

               Cow position:
               chr21:1591731-1591357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 31
               

               Conread position:
               150-393
               

               Cow position:
               chr21:6758524-6758277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               35, 11
               

               Conread position:
               151-263
               

               Cow position:
               chr21:19935583-19935468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               151-284
               

               Cow position:
               chr21:13225897-13225758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               151-292
               

               Cow position:
               chr21:26838053-26837914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               5, 31
               

               Conread position:
               151-506
               

               Cow position:
               chr21:28191214-28190845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               259
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               9, 200
               

               Conread position:
               151-595
               

               Cow position:
               chr21:26647834-26648276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 18
               

               Conread position:
               152-481
               

               Cow position:
               chr21:2809982-2810299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               34, 230
               

               Conread position:
               152-507
               

               Cow position:
               chr21:15611320-15610971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               23, 92
               

               Conread position:
               152-591
               

               Cow position:
               chr21:44515441-44514997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 11
               

               Conread position:
               153-304
               

               Cow position:
               chr21:7681276-7681119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               31, 36
               

               Conread position:
               153-398
               

               Cow position:
               chr21:45262631-45262886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               33, 176
               

               Conread position:
               153-490
               

               Cow position:
               chr21:9028794-9028454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 24
               

               Conread position:
               153-513
               

               Cow position:
               chr21:13365521-13365151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 95
               

               Conread position:
               153-587
               

               Cow position:
               chr21:30606917-30607367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 26
               

               Conread position:
               153-589
               

               Cow position:
               chr21:31691661-31691215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 233
               

               Conread position:
               153-595
               

               Cow position:
               chr21:724710-725162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 37
               

               Conread position:
               153-595
               

               Cow position:
               chr21:44671923-44671481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 151
               

               Conread position:
               154-282
               

               Cow position:
               chr21:7493095-7493222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 95
               

               Conread position:
               154-340
               

               Cow position:
               chr21:17063099-17062919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               30, 146
               

               Conread position:
               154-450
               

               Cow position:
               chr21:12723328-12723030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               155-286
               

               Cow position:
               chr21:42236623-42236490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               78, 30
               

               Conread position:
               155-396
               

               Cow position:
               chr21:40266298-40266049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 22
               

               Conread position:
               155-403
               

               Cow position:
               chr21:47713833-47714086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               138, 24
               

               Conread position:
               155-436
               

               Cow position:
               chr21:21077777-21077490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               19, 24
               

               Conread position:
               155-492
               

               Cow position:
               chr21:10001252-10000912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 231
               

               Conread position:
               155-493
               

               Cow position:
               chr21:21169319-21169664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 253
               

               Conread position:
               155-495
               

               Cow position:
               chr21:27145814-27146163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 47
               

               Conread position:
               155-524
               

               Cow position:
               chr21:41597988-41597614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 138
               

               Conread position:
               155-588
               

               Cow position:
               chr21:396044-395613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 93
               

               Conread position:
               155-594
               

               Cow position:
               chr21:5153797-5153346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 22
               

               Conread position:
               155-595
               

               Cow position:
               chr21:5567163-5566719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 139
               

               Conread position:
               155-595
               

               Cow position:
               chr21:25345038-25344606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 149
               

               Conread position:
               155-595
               

               Cow position:
               chr21:25383203-25382726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 248
               

               Conread position:
               155-595
               

               Cow position:
               chr21:28442909-28442462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 151
               

               Conread position:
               156-296
               

               Cow position:
               chr21:7584026-7583880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               156-321
               

               Cow position:
               chr21:1764703-1764863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               77, 25
               

               Conread position:
               156-361
               

               Cow position:
               chr21:471850-471638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               28, 35
               

               Conread position:
               156-582
               

               Cow position:
               chr21:20160852-20160425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 213
               

               Conread position:
               157-296
               

               Cow position:
               chr21:34482941-34483075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               27, 63
               

               Conread position:
               157-356
               

               Cow position:
               chr21:46132749-46132550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               28, 174
               

               Conread position:
               157-439
               

               Cow position:
               chr21:2657984-2657704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               16, 21
               

               Conread position:
               157-519
               

               Cow position:
               chr21:21077484-21077133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 70
               

               Conread position:
               157-595
               

               Cow position:
               chr21:18289833-18289391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 21
               

               Conread position:
               157-595
               

               Cow position:
               chr21:42413922-42414371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 205
               

               Conread position:
               158-278
               

               Cow position:
               chr21:19927093-19927215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               26, 47
               

               Conread position:
               158-346
               

               Cow position:
               chr21:40192131-40192325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               29, 9
               

               Conread position:
               158-381
               

               Cow position:
               chr21:38267888-38268098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               26, 117
               

               Conread position:
               158-386
               

               Cow position:
               chr21:11779368-11779592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               26, 49
               

               Conread position:
               158-411
               

               Cow position:
               chr21:7823538-7823289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               26, 54
               

               Conread position:
               158-501
               

               Cow position:
               chr21:8235388-8235722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 76
               

               Conread position:
               158-520
               

               Cow position:
               chr21:48176993-48176629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               26, 9
               

               Conread position:
               159-294
               

               Cow position:
               chr21:12207629-12207770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               160-421
               

               Cow position:
               chr21:17009152-17008884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               70, 201
               

               Conread position:
               160-595
               

               Cow position:
               chr21:47760940-47760505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 113
               

               Conread position:
               161-374
               

               Cow position:
               chr21:47363563-47363790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               162-520
               

               Cow position:
               chr21:28955671-28955325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               162-588
               

               Cow position:
               chr21:34659178-34658769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 88
               

               Conread position:
               163-282
               

               Cow position:
               chr21:35647659-35647783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               163-513
               

               Cow position:
               chr21:33791213-33791558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 105
               

               Conread position:
               163-595
               

               Cow position:
               chr21:45915549-45915976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 88
               

               Conread position:
               164-595
               

               Cow position:
               chr21:2679716-2679287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 58
               

               Conread position:
               164-595
               

               Cow position:
               chr21:46912712-46912272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 267
               

               Conread position:
               166-315
               

               Cow position:
               chr21:23460299-23460147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               166-436
               

               Cow position:
               chr21:36789962-36789686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               19, 204
               

               Conread position:
               166-595
               

               Cow position:
               chr21:25127769-25127338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 183
               

               Conread position:
               167-301
               

               Cow position:
               chr21:8231513-8231651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               17, 40
               

               Conread position:
               171-520
               

               Cow position:
               chr21:45330446-45330805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               173-293
               

               Cow position:
               chr21:17695507-17695630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               6, 19
               

               Conread position:
               174-554
               

               Cow position:
               chr21:41878627-41878245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               175-595
               

               Cow position:
               chr21:4998338-4998757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 128
               

               Conread position:
               176-507
               

               Cow position:
               chr21:17175291-17174956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               242
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               176-589
               

               Cow position:
               chr21:20044608-20045033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 169
               

               Conread position:
               177-508
               

               Cow position:
               chr21:18842083-18842423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 194
               

               Conread position:
               181-464
               

               Cow position:
               chr21:11251019-11250725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 117
               

               Conread position:
               183-404
               

               Cow position:
               chr21:40432593-40432368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               50, 149
               

               Conread position:
               183-520
               

               Cow position:
               chr21:18844864-18845212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               249
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               49, 205
               

               Conread position:
               183-591
               

               Cow position:
               chr21:34390827-34391234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 202
               

               Conread position:
               183-595
               

               Cow position:
               chr21:43357108-43357533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 156
               

               Conread position:
               184-594
               

               Cow position:
               chr21:35897479-35897892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 143
               

               Conread position:
               185-403
               

               Cow position:
               chr21:46141194-46140962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               185-412
               

               Cow position:
               chr21:17364334-17364564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               48, 109
               

               Conread position:
               185-436
               

               Cow position:
               chr21:18155420-18155681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               48, 256
               

               Conread position:
               185-451
               

               Cow position:
               chr21:20260173-20260448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               40, 202
               

               Conread position:
               185-506
               

               Cow position:
               chr21:46144105-46143760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 240
               

               Conread position:
               185-545
               

               Cow position:
               chr21:10007493-10007863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               45, 153
               

               Conread position:
               185-585
               

               Cow position:
               chr21:42540076-42540482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 141
               

               Conread position:
               185-588
               

               Cow position:
               chr21:16187661-16188060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 145
               

               Conread position:
               185-595
               

               Cow position:
               chr21:4080494-4080082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 118
               

               Conread position:
               185-595
               

               Cow position:
               chr21:13048047-13048468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 189
               

               Conread position:
               189-495
               

               Cow position:
               chr21:10608321-10608627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               6, 14
               

               Conread position:
               190-595
               

               Cow position:
               chr21:19363318-19363722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 199
               

               Conread position:
               192-427
               

               Cow position:
               chr21:2260227-2260461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               46, 25
               

               Conread position:
               192-527
               

               Cow position:
               chr21:8618403-8618070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 87
               

               Conread position:
               192-589
               

               Cow position:
               chr21:11227822-11228220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               37, 195
               

               Conread position:
               192-595
               

               Cow position:
               chr21:38867448-38867839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               283
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               18, 101
               

               Conread position:
               192-595
               

               Cow position:
               chr21:40786816-40786399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 27
               

               Conread position:
               194-389
               

               Cow position:
               chr21:17929700-17929907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               194-410
               

               Cow position:
               chr21:9036438-9036209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               194-426
               

               Cow position:
               chr21:9697943-9698189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               194-588
               

               Cow position:
               chr21:39664261-39664638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 113
               

               Conread position:
               194-595
               

               Cow position:
               chr21:45151492-45151903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 111
               

               Conread position:
               196-595
               

               Cow position:
               chr21:28512649-28512269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 84
               

               Conread position:
               197-515
               

               Cow position:
               chr21:10601241-10601560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               28, 147
               

               Conread position:
               198-554
               

               Cow position:
               chr21:27123988-27124359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 167
               

               Conread position:
               201-405
               

               Cow position:
               chr21:10858937-10858735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 92
               

               Conread position:
               201-412
               

               Cow position:
               chr21:11198018-11198237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               29, 187
               

               Conread position:
               201-482
               

               Cow position:
               chr21:13840456-13840164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               32, 10
               

               Conread position:
               201-588
               

               Cow position:
               chr21:33729560-33729168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 143
               

               Conread position:
               201-595
               

               Cow position:
               chr21:23899677-23900079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 81
               

               Conread position:
               201-595
               

               Cow position:
               chr21:27607229-27607635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               273
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               32, 85
               

               Conread position:
               201-595
               

               Cow position:
               chr21:28477759-28477353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 192
               

               Conread position:
               203-514
               

               Cow position:
               chr21:19174835-19174512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               25, 114
               

               Conread position:
               204-421
               

               Cow position:
               chr21:6017753-6017519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               204-528
               

               Cow position:
               chr21:3498621-3498293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 54
               

               Conread position:
               206-399
               

               Cow position:
               chr21:33359918-33360109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               94, 10
               

               Conread position:
               206-436
               

               Cow position:
               chr21:13519305-13519083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               90, 23
               

               Conread position:
               206-465
               

               Cow position:
               chr21:45439113-45439391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               206-567
               

               Cow position:
               chr21:5636595-5636965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 177
               

               Conread position:
               207-585
               

               Cow position:
               chr21:10967356-10966971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               259
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               21, 108
               

               Conread position:
               208-471
               

               Cow position:
               chr21:38664762-38664494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               32, 139
               

               Conread position:
               208-552
               

               Cow position:
               chr21:8351193-8351530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 12
               

               Conread position:
               209-595
               

               Cow position:
               chr21:10727399-10727009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 169
               

               Conread position:
               210-595
               

               Cow position:
               chr21:36162838-36163235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               211-589
               

               Cow position:
               chr21:3813370-3813733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 22
               

               Conread position:
               214-511
               

               Cow position:
               chr21:6102148-6102457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 138
               

               Conread position:
               214-595
               

               Cow position:
               chr21:24222420-24222813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 158
               

               Conread position:
               215-490
               

               Cow position:
               chr21:6765977-6765714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               16, 52
               

               Conread position:
               215-595
               

               Cow position:
               chr21:24607502-24607113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 105
               

               Conread position:
               216-567
               

               Cow position:
               chr21:13409716-13410067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 68
               

               Conread position:
               217-409
               

               Cow position:
               chr21:13495657-13495455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               24, 163
               

               Conread position:
               224-505
               

               Cow position:
               chr21:46829168-46829451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               7, 71
               

               Conread position:
               226-418
               

               Cow position:
               chr21:8527383-8527571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               64, 101
               

               Conread position:
               226-495
               

               Cow position:
               chr21:9873060-9872796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               227-595
               

               Cow position:
               chr21:11640122-11639749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 154
               

               Conread position:
               227-595
               

               Cow position:
               chr21:28882239-28881877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 175
               

               Conread position:
               228-589
               

               Cow position:
               chr21:20925405-20925771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 7
               

               Conread position:
               229-392
               

               Cow position:
               chr21:19210812-19210646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               62, 144
               

               Conread position:
               229-436
               

               Cow position:
               chr21:34722690-34722897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               67, 135
               

               Conread position:
               229-527
               

               Cow position:
               chr21:7068150-7067840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               62, 154
               

               Conread position:
               229-589
               

               Cow position:
               chr21:44403-44051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 162
               

               Conread position:
               229-595
               

               Cow position:
               chr21:32536075-32535706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 154
               

               Conread position:
               230-520
               

               Cow position:
               chr21:24765380-24765087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 31
               

               Conread position:
               230-524
               

               Cow position:
               chr21:3380981-3381282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               61, 159
               

               Conread position:
               230-595
               

               Cow position:
               chr21:9847913-9848263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               178, 59
               

               Conread position:
               230-595
               

               Cow position:
               chr21:44109100-44108737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 105
               

               Conread position:
               230-595
               

               Cow position:
               chr21:47802160-47802534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 63
               

               Conread position:
               231-421
               

               Cow position:
               chr21:5985222-5985415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               66, 99
               

               Conread position:
               231-588
               

               Cow position:
               chr21:16612721-16612364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 124
               

               Conread position:
               232-429
               

               Cow position:
               chr21:9979875-9980069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               63, 120
               

               Conread position:
               237-519
               

               Cow position:
               chr21:39450071-39450364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               237-595
               

               Cow position:
               chr21:5454901-5455258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 177
               

               Conread position:
               237-595
               

               Cow position:
               chr21:6764610-6764974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 222
               

               Conread position:
               238-462
               

               Cow position:
               chr21:2294072-2293854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               67, 139
               

               Conread position:
               238-595
               

               Cow position:
               chr21:363722-363383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 61
               

               Conread position:
               242-428
               

               Cow position:
               chr21:29224775-29224966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               64, 77
               

               Conread position:
               242-439
               

               Cow position:
               chr21:42131509-42131716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               58, 31
               

               Conread position:
               242-595
               

               Cow position:
               chr21:13898273-13897921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 142
               

               Conread position:
               243-460
               

               Cow position:
               chr21:34737114-34736894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               43, 94
               

               Conread position:
               243-591
               

               Cow position:
               chr21:1464314-1463965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 259
               

               Conread position:
               243-595
               

               Cow position:
               chr21:8985636-8985277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 111
               

               Conread position:
               246-396
               

               Cow position:
               chr21:25817900-25817752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               110
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               246-510
               

               Cow position:
               chr21:4268946-4268686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               131, 45
               

               Conread position:
               247-519
               

               Cow position:
               chr21:35569304-35569580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               45, 115
               

               Conread position:
               247-595
               

               Cow position:
               chr21:2785696-2786064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 86
               

               Conread position:
               247-595
               

               Cow position:
               chr21:5137407-5137779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               262
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               247-595
               

               Cow position:
               chr21:26829183-26829507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               247-595
               

               Cow position:
               chr21:27743829-27743469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 222
               

               Conread position:
               247-595
               

               Cow position:
               chr21:28617671-28617330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 218
               

               Conread position:
               247-595
               

               Cow position:
               chr21:43240945-43240587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 71
               

               Conread position:
               249-516
               

               Cow position:
               chr21:3047755-3047493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               47, 118
               

               Conread position:
               249-593
               

               Cow position:
               chr21:42913665-42914016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 133
               

               Conread position:
               252-520
               

               Cow position:
               chr21:34835354-34835620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               36, 134
               

               Conread position:
               252-541
               

               Cow position:
               chr21:31676574-31676284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 198
               

               Conread position:
               252-595
               

               Cow position:
               chr21:16910136-16909783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               43, 234
               

               Conread position:
               253-588
               

               Cow position:
               chr21:45867008-45866671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 142
               

               Conread position:
               253-594
               

               Cow position:
               chr21:17714392-17714042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               241
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               37, 129
               

               Conread position:
               254-589
               

               Cow position:
               chr21:9862569-9862887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               39, 73
               

               Conread position:
               255-589
               

               Cow position:
               chr21:21480112-21480445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 61
               

               Conread position:
               256-461
               

               Cow position:
               chr21:39809965-39809762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               34, 106
               

               Conread position:
               256-504
               

               Cow position:
               chr21:31038414-31038668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               39, 128
               

               Conread position:
               257-577
               

               Cow position:
               chr21:911896-912218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 125
               
UCSC Genome Browser
               Conread position:
               266-595
               

               Cow position:
               chr21:42170695-42170359 (view  custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 116
               
UCSC Genome Browser
               
               
               
Conread position: 268-436

               
               
               
Cow position: chr21:21143960-21143790 (view  custom track)

               
               
               
Alignm length: 174

               
               
               
Alignm identity: 132

               
               
               
Alignm E-value: 6e-28

               
               
               
Alignm gaps (pig, cow): 23, 127
UCSC Genome Browser
               
               
               
Conread position: 284-594

               
               
               
Cow position: chr21:5344699-5344390 (view  custom track)

               
               
               
Alignm length: 319

               
               
               
Alignm identity: 235

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 14, 111

               
               
               Conread position:285-494
               
               
               Cow position:chr21:19936897-19937103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:285-588
               
               
               Cow position:chr21:12617174-12616877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 67

               
               
               Conread position:286-595
               
               
               Cow position:chr21:28993585-28993898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:294-595
               
               
               Cow position:chr21:10882467-10882154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:299-595
               
               
               Cow position:chr21:21216120-21216413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 77

               
               
               Conread position:300-434
               
               
               Cow position:chr21:46469992-46469859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):116, 90

               
               
               Conread position:300-494
               
               
               Cow position:chr21:712949-712764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:300-527
               
               
               Cow position:chr21:37361454-37361678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):192, 76

               
               
               Conread position:300-589
               
               
               Cow position:chr21:17434296-17434586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):138, 76

               
               
               Conread position:300-595
               
               
               Cow position:chr21:18494991-18494706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 76

               
               
               Conread position:300-595
               
               
               Cow position:chr21:21968339-21968046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):119, 76

               
               
               Conread position:300-595
               
               
               Cow position:chr21:48484425-48484712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:301-553
               
               
               Cow position:chr21:9278402-9278138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:302-589
               
               
               Cow position:chr21:40058825-40058539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 73

               
               
               Conread position:304-518
               
               
               Cow position:chr21:9998699-9998916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):133, 126

               
               
               Conread position:304-575
               
               
               Cow position:chr21:42190157-42190419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 101

               
               
               Conread position:304-588
               
               
               Cow position:chr21:13751408-13751122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:304-594
               
               
               Cow position:chr21:17412281-17412563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 51

               
               
               Conread position:305-595
               
               
               Cow position:chr21:33419706-33419988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:306-589
               
               
               Cow position:chr21:13703669-13703952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):104, 7

               
               
               Conread position:307-515
               
               
               Cow position:chr21:13850050-13850263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 158

               
               
               Conread position:309-535
               
               
               Cow position:chr21:13303832-13303607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:311-514
               
               
               Cow position:chr21:40065303-40065506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 115

               
               
               Conread position:321-516
               
               
               Cow position:chr21:13163892-13163700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:329-595
               
               
               Cow position:chr21:16789721-16789449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 52

               
               
               Conread position:331-495
               
               
               Cow position:chr21:49353193-49353030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:335-595
               
               
               Cow position:chr21:31159250-31158983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 238

               
               
               Conread position:344-516
               
               
               Cow position:chr21:9334282-9334452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):151, 69
Show alignments to all cow chromosomes.
Conread position:	66-503
Cow position:	chr21:17184201-17183741 (view UCSC Genome Browser custom track)
Alignm length:	468
Alignm identity:	340
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 221
Conread position:	69-595
Cow position:	chr21:38121364-38120831 (view UCSC Genome Browser custom track)
Alignm length:	550
Alignm identity:	400
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 79
Conread position:	70-591
Cow position:	chr21:5898127-5898663 (view UCSC Genome Browser custom track)
Alignm length:	545
Alignm identity:	392
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 326
Conread position:	74-428
Cow position:	chr21:10673383-10673027 (view UCSC Genome Browser custom track)
Alignm length:	365
Alignm identity:	268
Alignm E-value:	0
Alignm gaps (pig, cow):	69, 132
Conread position:	75-520
Cow position:	chr21:45356088-45355639 (view UCSC Genome Browser custom track)
Alignm length:	456
Alignm identity:	328
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 66
Conread position:	76-289
Cow position:	chr21:742547-742325 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	162
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	18, 173
Conread position:	76-528
Cow position:	chr21:32339475-32339940 (view UCSC Genome Browser custom track)
Alignm length:	471
Alignm identity:	353
Alignm E-value:	0
Alignm gaps (pig, cow):	61, 10
Conread position:	76-595
Cow position:	chr21:27229533-27230064 (view UCSC Genome Browser custom track)
Alignm length:	539
Alignm identity:	389
Alignm E-value:	0
Alignm gaps (pig, cow):	50, 10
Conread position:	77-237
Cow position:	chr21:18495484-18495315 (view UCSC Genome Browser custom track)
Alignm length:	171
Alignm identity:	133
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	60, 12
Conread position:	77-289
Cow position:	chr21:18135621-18135834 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	150
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	19, 62
Conread position:	77-292
Cow position:	chr21:42145089-42144861 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	173
Alignm E-value:	7e-30
Alignm gaps (pig, cow):	53, 103
Conread position:	77-296
Cow position:	chr21:40475771-40475531 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	180
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	60, 199
Conread position:	77-403
Cow position:	chr21:7394638-7394300 (view UCSC Genome Browser custom track)
Alignm length:	346
Alignm identity:	240
Alignm E-value:	1e-35
Alignm gaps (pig, cow):	50, 12
Conread position:	77-465
Cow position:	chr21:957939-957526 (view UCSC Genome Browser custom track)
Alignm length:	418
Alignm identity:	314
Alignm E-value:	0
Alignm gaps (pig, cow):	60, 122
Conread position:	77-504
Cow position:	chr21:802055-802475 (view UCSC Genome Browser custom track)
Alignm length:	443
Alignm identity:	313
Alignm E-value:	0
Alignm gaps (pig, cow):	44, 6
Conread position:	77-586
Cow position:	chr21:4400064-4399537 (view UCSC Genome Browser custom track)
Alignm length:	532
Alignm identity:	386
Alignm E-value:	0
Alignm gaps (pig, cow):	23, 204
Conread position:	77-595
Cow position:	chr21:5238658-5238134 (view UCSC Genome Browser custom track)
Alignm length:	547
Alignm identity:	353
Alignm E-value:	9e-33
Alignm gaps (pig, cow):	63, 326
Conread position:	78-274
Cow position:	chr21:25012336-25012135 (view UCSC Genome Browser custom track)
Alignm length:	204
Alignm identity:	143
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	20, 28
Conread position:	78-343
Cow position:	chr21:44829509-44829783 (view UCSC Genome Browser custom track)
Alignm length:	282
Alignm identity:	190
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	18, 44
Conread position:	78-490
Cow position:	chr21:28244736-28244310 (view UCSC Genome Browser custom track)
Alignm length:	437
Alignm identity:	318
Alignm E-value:	0
Alignm gaps (pig, cow):	60, 190