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Cow genome map

           
Conread name:
           
rssp06_d15.y1
        

               
Conread position:
               
61-283
               

               
Cow position:
               
chr9:16121337-16121572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
61-438
               

               
Cow position:
               
chr9:11168552-11168934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
63-522
               

               
Cow position:
               
chr9:20090868-20091330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
74-295
               

               
Cow position:
               
chr9:7611967-7611732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 158
               

               
Conread position:
               
75-379
               

               
Cow position:
               
chr9:18439333-18439036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
76-321
               

               
Cow position:
               
chr9:9459811-9460067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 185
               

               
Conread position:
               
77-256
               

               
Cow position:
               
chr9:20828727-20828924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
77-289
               

               
Cow position:
               
chr9:14738075-14738304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
77-292
               

               
Cow position:
               
chr9:38289472-38289268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
19, 60
               

               
Conread position:
               
77-293
               

               
Cow position:
               
chr9:33347659-33347431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
77-350
               

               
Cow position:
               
chr9:9311682-9311980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
60, 282
               

               
Conread position:
               
77-356
               

               
Cow position:
               
chr9:29339480-29339198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
77-402
               

               
Cow position:
               
chr9:26477035-26477387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 288
               

               
Conread position:
               
77-520
               

               
Cow position:
               
chr9:20579766-20579336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
19, 166
               

               
Conread position:
               
77-552
               

               
Cow position:
               
chr9:5327085-5327567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 253
               

               
Conread position:
               
77-589
               

               
Cow position:
               
chr9:5433468-5433990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
77-594
               

               
Cow position:
               
chr9:29808293-29808825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
77-595
               

               
Cow position:
               
chr9:22318184-22318703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
78-256
               

               
Cow position:
               
chr9:3847241-3847424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
78-261
               

               
Cow position:
               
chr9:32812012-32812204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr9:44822498-44822275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
78-284
               

               
Cow position:
               
chr9:13742362-13742573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
78-288
               

               
Cow position:
               
chr9:7859792-7859583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
78-314
               

               
Cow position:
               
chr9:9686572-9686329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
78-399
               

               
Cow position:
               
chr9:31215903-31216256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 168
               

               
Conread position:
               
78-530
               

               
Cow position:
               
chr9:54716771-54716326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 156
               

               
Conread position:
               
78-595
               

               
Cow position:
               
chr9:56032471-56031964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
78-595
               

               
Cow position:
               
chr9:63785085-63784563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 227
               

               
Conread position:
               
79-588
               

               
Cow position:
               
chr9:33822964-33823449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
82-275
               

               
Cow position:
               
chr9:3924283-3924484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
82-293
               

               
Cow position:
               
chr9:24429259-24429037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr9:34279231-34278991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 173
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chr9:40586900-40587054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
83-256
               

               
Cow position:
               
chr9:4257148-4256967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
83-258
               

               
Cow position:
               
chr9:6392491-6392671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
101, 171
               

               
Conread position:
               
83-285
               

               
Cow position:
               
chr9:39135790-39135577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
83-288
               

               
Cow position:
               
chr9:7806125-7805907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
83-292
               

               
Cow position:
               
chr9:48016818-48017039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
83-345
               

               
Cow position:
               
chr9:40507769-40507489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 234
               

               
Conread position:
               
83-361
               

               
Cow position:
               
chr9:5900125-5899830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
83-402
               

               
Cow position:
               
chr9:6852222-6851897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
83-405
               

               
Cow position:
               
chr9:25556812-25557139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 224
               

               
Conread position:
               
83-422
               

               
Cow position:
               
chr9:19555218-19555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
83-428
               

               
Cow position:
               
chr9:10650459-10650104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
83-454
               

               
Cow position:
               
chr9:42264050-42264444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
57, 221
               

               
Conread position:
               
83-456
               

               
Cow position:
               
chr9:53762528-53762926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
46, 278
               

               
Conread position:
               
83-461
               

               
Cow position:
               
chr9:1916137-1916517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
83-462
               

               
Cow position:
               
chr9:40303306-40302894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
43, 326
               

               
Conread position:
               
83-480
               

               
Cow position:
               
chr9:33120049-33119633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
83-489
               

               
Cow position:
               
chr9:58979233-58979659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
83-502
               

               
Cow position:
               
chr9:47868853-47869278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 153
               

               
Conread position:
               
83-514
               

               
Cow position:
               
chr9:61847286-61846866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
83-516
               

               
Cow position:
               
chr9:25546486-25546919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
83-546
               

               
Cow position:
               
chr9:54681350-54681817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
83-585
               

               
Cow position:
               
chr9:34309875-34310389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
83-589
               

               
Cow position:
               
chr9:3387545-3388050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 122
               

               
Conread position:
               
83-589
               

               
Cow position:
               
chr9:6879630-6880127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 55
               

               
Conread position:
               
83-595
               

               
Cow position:
               
chr9:5500693-5501212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 311
               

               
Conread position:
               
83-595
               

               
Cow position:
               
chr9:20039281-20038796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 55
               

               
Conread position:
               
83-595
               

               
Cow position:
               
chr9:28947715-28948218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
83-595
               

               
Cow position:
               
chr9:41679591-41680098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
83-595
               

               
Cow position:
               
chr9:41789131-41789652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
86-252
               

               
Cow position:
               
chr9:34917345-34917166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
86-293
               

               
Cow position:
               
chr9:41785053-41785269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 99
               

               
Conread position:
               
86-293
               

               
Cow position:
               
chr9:50382486-50382269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 152
               

               
Conread position:
               
86-295
               

               
Cow position:
               
chr9:42586716-42586495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
86-372
               

               
Cow position:
               
chr9:5398986-5399280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
96, 51
               

               
Conread position:
               
86-436
               

               
Cow position:
               
chr9:62724374-62724743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
86-451
               

               
Cow position:
               
chr9:17799467-17799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 309
               

               
Conread position:
               
86-508
               

               
Cow position:
               
chr9:5209434-5209857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
86-521
               

               
Cow position:
               
chr9:34468727-34468302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
86-524
               

               
Cow position:
               
chr9:56453178-56453626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
86-553
               

               
Cow position:
               
chr9:5227328-5226842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
86-555
               

               
Cow position:
               
chr9:33101273-33100817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 188
               

               
Conread position:
               
86-557
               

               
Cow position:
               
chr9:11299841-11299370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 163
               

               
Conread position:
               
86-578
               

               
Cow position:
               
chr9:45141764-45141279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 294
               

               
Conread position:
               
86-591
               

               
Cow position:
               
chr9:50607098-50606592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
87-281
               

               
Cow position:
               
chr9:39148915-39149126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
87-518
               

               
Cow position:
               
chr9:3070560-3070135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
88-247
               

               
Cow position:
               
chr9:47928754-47928916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
55, 90
               

               
Conread position:
               
88-263
               

               
Cow position:
               
chr9:34135563-34135745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
88-274
               

               
Cow position:
               
chr9:34034104-34034295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 125
               

               
Conread position:
               
88-322
               

               
Cow position:
               
chr9:29819560-29819808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
88-399
               

               
Cow position:
               
chr9:51721053-51720734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 169
               

               
Conread position:
               
88-516
               

               
Cow position:
               
chr9:10144627-10144186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
88-595
               

               
Cow position:
               
chr9:33668578-33669086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 197
               

               
Conread position:
               
93-436
               

               
Cow position:
               
chr9:32115741-32115405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
93-502
               

               
Cow position:
               
chr9:23042638-23043047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
93-504
               

               
Cow position:
               
chr9:32732825-32732411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 47
               

               
Conread position:
               
94-282
               

               
Cow position:
               
chr9:11030030-11030232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 141
               

               
Conread position:
               
94-595
               

               
Cow position:
               
chr9:28983041-28983551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
95-595
               

               
Cow position:
               
chr9:19902933-19903417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 237
               

               
Conread position:
               
99-233
               

               
Cow position:
               
chr9:32773067-32773208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
99-253
               

               
Cow position:
               
chr9:48635039-48634885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
99-255
               

               
Cow position:
               
chr9:5033042-5032882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
99-277
               

               
Cow position:
               
chr9:60355355-60355169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
99-288
               

               
Cow position:
               
chr9:5650116-5649921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
99-293
               

               
Cow position:
               
chr9:39758375-39758577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
99-321
               

               
Cow position:
               
chr9:21384097-21383861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
99-392
               

               
Cow position:
               
chr9:39211456-39211768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 300
               

               
Conread position:
               
99-433
               

               
Cow position:
               
chr9:11123635-11123286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 301
               

               
Conread position:
               
99-511
               

               
Cow position:
               
chr9:5757132-5756722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
99-517
               

               
Cow position:
               
chr9:4629954-4630389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 282
               

               
Conread position:
               
99-578
               

               
Cow position:
               
chr9:26403640-26404137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 291
               

               
Conread position:
               
99-589
               

               
Cow position:
               
chr9:8636523-8637015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
99-589
               

               
Cow position:
               
chr9:20961396-20960923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 39
               

               
Conread position:
               
99-595
               

               
Cow position:
               
chr9:42497673-42498193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 133
               

               
Conread position:
               
100-332
               

               
Cow position:
               
chr9:27347664-27347896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
100-520
               

               
Cow position:
               
chr9:4861242-4861679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 293
               

               
Conread position:
               
101-296
               

               
Cow position:
               
chr9:25400340-25400139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 166
               

               
Conread position:
               
101-296
               

               
Cow position:
               
chr9:39315712-39315909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
101-588
               

               
Cow position:
               
chr9:20416642-20416153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
102-280
               

               
Cow position:
               
chr9:45759356-45759531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 93
               

               
Conread position:
               
103-393
               

               
Cow position:
               
chr9:36843657-36843949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
103-422
               

               
Cow position:
               
chr9:1370806-1371123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
103-595
               

               
Cow position:
               
chr9:42446121-42445608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 288
               

               
Conread position:
               
105-589
               

               
Cow position:
               
chr9:9461792-9461300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
106-295
               

               
Cow position:
               
chr9:8976537-8976352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
106-295
               

               
Cow position:
               
chr9:44584453-44584655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
107-595
               

               
Cow position:
               
chr9:55321507-55322016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
108-515
               

               
Cow position:
               
chr9:51204603-51205006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
109-392
               

               
Cow position:
               
chr9:11304204-11303917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
110-288
               

               
Cow position:
               
chr9:8562692-8562874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
110-595
               

               
Cow position:
               
chr9:50081170-50080681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 195
               

               
Conread position:
               
111-276
               

               
Cow position:
               
chr9:6293467-6293637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 5
               

               
Conread position:
               
111-584
               

               
Cow position:
               
chr9:29840771-29841243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
114-524
               

               
Cow position:
               
chr9:33940483-33940901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 45
               

               
Conread position:
               
116-375
               

               
Cow position:
               
chr9:1867328-1867595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
68, 156
               

               
Conread position:
               
120-520
               

               
Cow position:
               
chr9:9406171-9405765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
120-588
               

               
Cow position:
               
chr9:43870852-43871330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 267
               

               
Conread position:
               
121-376
               

               
Cow position:
               
chr9:33696915-33697175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
121-463
               

               
Cow position:
               
chr9:4580524-4580188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
17, 177
               

               
Conread position:
               
121-571
               

               
Cow position:
               
chr9:9199897-9199444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
122-396
               

               
Cow position:
               
chr9:23261317-23261598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
122-498
               

               
Cow position:
               
chr9:9753508-9753128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
122-595
               

               
Cow position:
               
chr9:4646441-4645969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
123-263
               

               
Cow position:
               
chr9:6118550-6118409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
123-268
               

               
Cow position:
               
chr9:35306463-35306312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
123-293
               

               
Cow position:
               
chr9:47214659-47214486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
123-296
               

               
Cow position:
               
chr9:2037326-2037492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 38
               

               
Conread position:
               
123-346
               

               
Cow position:
               
chr9:27345699-27345488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
123-387
               

               
Cow position:
               
chr9:33114229-33114501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
33, 258
               

               
Conread position:
               
123-399
               

               
Cow position:
               
chr9:12226095-12225813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
35, 231
               

               
Conread position:
               
123-467
               

               
Cow position:
               
chr9:29091660-29092040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
123-507
               

               
Cow position:
               
chr9:54677147-54677499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
123-513
               

               
Cow position:
               
chr9:26085941-26086350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 219
               

               
Conread position:
               
123-527
               

               
Cow position:
               
chr9:15215800-15215384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
123-535
               

               
Cow position:
               
chr9:10010702-10011107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
123-566
               

               
Cow position:
               
chr9:32676564-32677018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
123-570
               

               
Cow position:
               
chr9:33092845-33093284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
123-585
               

               
Cow position:
               
chr9:647664-648129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
123-595
               

               
Cow position:
               
chr9:16300687-16300203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 267
               

               
Conread position:
               
123-595
               

               
Cow position:
               
chr9:18216022-18215548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
123-595
               

               
Cow position:
               
chr9:51566608-51566136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
124-281
               

               
Cow position:
               
chr9:32858749-32858585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
124-393
               

               
Cow position:
               
chr9:42478596-42478304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
124-521
               

               
Cow position:
               
chr9:34689710-34689321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
124-595
               

               
Cow position:
               
chr9:9443716-9443227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
125-293
               

               
Cow position:
               
chr9:12786592-12786414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
125-418
               

               
Cow position:
               
chr9:3774051-3774350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
125-524
               

               
Cow position:
               
chr9:19067671-19068091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
125-595
               

               
Cow position:
               
chr9:26057546-26057087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
125-595
               

               
Cow position:
               
chr9:37069673-37069186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 173
               

               
Conread position:
               
126-299
               

               
Cow position:
               
chr9:5665956-5666130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr9:52754959-52754755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
126-346
               

               
Cow position:
               
chr9:39709746-39709961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
126-374
               

               
Cow position:
               
chr9:32670057-32669803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
126-375
               

               
Cow position:
               
chr9:6596340-6596089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
126-428
               

               
Cow position:
               
chr9:58448233-58447926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
126-436
               

               
Cow position:
               
chr9:16811764-16811459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
126-436
               

               
Cow position:
               
chr9:52638277-52637956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
126-439
               

               
Cow position:
               
chr9:8919889-8920206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 27
               

               
Conread position:
               
126-456
               

               
Cow position:
               
chr9:27279199-27279543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
126-508
               

               
Cow position:
               
chr9:9403291-9402907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
126-520
               

               
Cow position:
               
chr9:26279279-26278887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
126-567
               

               
Cow position:
               
chr9:15806041-15805584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
126-586
               

               
Cow position:
               
chr9:6397893-6397432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
126-595
               

               
Cow position:
               
chr9:8937041-8937513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
126-595
               

               
Cow position:
               
chr9:9723986-9723518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
126-595
               

               
Cow position:
               
chr9:52407053-52407532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
128-353
               

               
Cow position:
               
chr9:1878112-1877884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
128-380
               

               
Cow position:
               
chr9:52513557-52513302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
128-495
               

               
Cow position:
               
chr9:23541491-23541154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
128-517
               

               
Cow position:
               
chr9:8288506-8288904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr9:10309108-10308652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
128-588
               

               
Cow position:
               
chr9:56772964-56773437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 226
               

               
Conread position:
               
128-594
               

               
Cow position:
               
chr9:62442178-62442645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
129-247
               

               
Cow position:
               
chr9:46190031-46190155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
129-280
               

               
Cow position:
               
chr9:24243832-24243675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
129-283
               

               
Cow position:
               
chr9:54051667-54051823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
129-296
               

               
Cow position:
               
chr9:32982186-32982011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
129-301
               

               
Cow position:
               
chr9:54664744-54664916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
129-315
               

               
Cow position:
               
chr9:33541948-33542142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
129-330
               

               
Cow position:
               
chr9:23632759-23632558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
129-334
               

               
Cow position:
               
chr9:19758610-19758813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 144
               

               
Conread position:
               
129-342
               

               
Cow position:
               
chr9:52511011-52511227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
129-343
               

               
Cow position:
               
chr9:46664714-46664935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 165
               

               
Conread position:
               
129-376
               

               
Cow position:
               
chr9:32348926-32348675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 167
               

               
Conread position:
               
129-405
               

               
Cow position:
               
chr9:17518600-17518315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 194
               

               
Conread position:
               
129-417
               

               
Cow position:
               
chr9:31638766-31638455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
55, 271
               

               
Conread position:
               
129-430
               

               
Cow position:
               
chr9:9654416-9654110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
129-436
               

               
Cow position:
               
chr9:28392137-28391831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
129-454
               

               
Cow position:
               
chr9:1972837-1973165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
129-498
               

               
Cow position:
               
chr9:63194499-63194875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
129-506
               

               
Cow position:
               
chr9:48118789-48118427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
129-511
               

               
Cow position:
               
chr9:1751226-1751616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 240
               

               
Conread position:
               
129-516
               

               
Cow position:
               
chr9:11319743-11319358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
129-527
               

               
Cow position:
               
chr9:58134111-58133727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
129-530
               

               
Cow position:
               
chr9:22696114-22696516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
129-557
               

               
Cow position:
               
chr9:50977360-50976920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
129-589
               

               
Cow position:
               
chr9:33681548-33682034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 283
               

               
Conread position:
               
129-589
               

               
Cow position:
               
chr9:54528402-54528874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 256
               

               
Conread position:
               
129-594
               

               
Cow position:
               
chr9:1520850-1520365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
129-595
               

               
Cow position:
               
chr9:20942723-20942248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
129-595
               

               
Cow position:
               
chr9:36445509-36445986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
129-595
               

               
Cow position:
               
chr9:59386878-59386415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
130-253
               

               
Cow position:
               
chr9:52998491-52998361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
130-258
               

               
Cow position:
               
chr9:40603556-40603692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
130-276
               

               
Cow position:
               
chr9:11098562-11098414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
130-282
               

               
Cow position:
               
chr9:35832728-35832571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
130-284
               

               
Cow position:
               
chr9:21292518-21292357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
130-292
               

               
Cow position:
               
chr9:5110745-5110916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
130-292
               

               
Cow position:
               
chr9:34024588-34024757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
130-292
               

               
Cow position:
               
chr9:36628011-36628176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
130-292
               

               
Cow position:
               
chr9:55529692-55529853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
130-293
               

               
Cow position:
               
chr9:41964844-41964675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
130-294
               

               
Cow position:
               
chr9:58369104-58368937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
130-341
               

               
Cow position:
               
chr9:26310401-26310620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr9:23956088-23955870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
130-374
               

               
Cow position:
               
chr9:4263200-4262948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
130-374
               

               
Cow position:
               
chr9:28686277-28686536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
130-377
               

               
Cow position:
               
chr9:26102627-26102872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
160, 23
               

               
Conread position:
               
130-410
               

               
Cow position:
               
chr9:40215136-40215422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
130-411
               

               
Cow position:
               
chr9:12280862-12281149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
54, 166
               

               
Conread position:
               
130-422
               

               
Cow position:
               
chr9:48627917-48628218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
130-424
               

               
Cow position:
               
chr9:25583717-25584013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
130-454
               

               
Cow position:
               
chr9:61302892-61303224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
130-466
               

               
Cow position:
               
chr9:52130901-52131253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
130-467
               

               
Cow position:
               
chr9:56011392-56011733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
130-468
               

               
Cow position:
               
chr9:3186018-3186379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
130-475
               

               
Cow position:
               
chr9:64105792-64106150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
130-493
               

               
Cow position:
               
chr9:9596061-9595692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 253
               

               
Conread position:
               
130-510
               

               
Cow position:
               
chr9:55288000-55287611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 207
               

               
Conread position:
               
130-517
               

               
Cow position:
               
chr9:13670525-13670924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
130-520
               

               
Cow position:
               
chr9:30477883-30477510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 153
               

               
Conread position:
               
130-561
               

               
Cow position:
               
chr9:52485023-52484590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
130-562
               

               
Cow position:
               
chr9:34286687-34287121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 211
               

               
Conread position:
               
130-583
               

               
Cow position:
               
chr9:28726840-28726373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 266
               

               
Conread position:
               
130-589
               

               
Cow position:
               
chr9:6192568-6192105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
130-589
               

               
Cow position:
               
chr9:30402540-30402058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 165
               

               
Conread position:
               
130-589
               

               
Cow position:
               
chr9:31346838-31347312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 121
               

               
Conread position:
               
130-589
               

               
Cow position:
               
chr9:48563973-48564454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
130-590
               

               
Cow position:
               
chr9:28773029-28773477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
130-591
               

               
Cow position:
               
chr9:29006448-29006928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr9:5836034-5836514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 401
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr9:9551979-9552450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr9:11313622-11313149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr9:22443734-22443249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr9:28747629-28747160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 225
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr9:29185251-29184772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 265
               

               
Conread position:
               
130-595
               

               
Cow position:
               
chr9:37016788-37017249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
131-287
               

               
Cow position:
               
chr9:25375841-25375683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
131-428
               

               
Cow position:
               
chr9:9815300-9815614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
15, 156
               

               
Conread position:
               
131-428
               

               
Cow position:
               
chr9:53139239-53138934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
131-495
               

               
Cow position:
               
chr9:11068588-11068205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 243
               

               
Conread position:
               
131-520
               

               
Cow position:
               
chr9:52578643-52578243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
131-595
               

               
Cow position:
               
chr9:35167066-35167538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 254
               

               
Conread position:
               
132-377
               

               
Cow position:
               
chr9:18425800-18426065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 212
               

               
Conread position:
               
132-595
               

               
Cow position:
               
chr9:39681232-39681723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 351
               

               
Conread position:
               
133-301
               

               
Cow position:
               
chr9:8992287-8992112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
133-346
               

               
Cow position:
               
chr9:33584792-33584566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
133-366
               

               
Cow position:
               
chr9:6189472-6189235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 146
               

               
Conread position:
               
133-366
               

               
Cow position:
               
chr9:31359497-31359737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
133-367
               

               
Cow position:
               
chr9:34410501-34410258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
133-374
               

               
Cow position:
               
chr9:41394758-41394510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 214
               

               
Conread position:
               
133-397
               

               
Cow position:
               
chr9:5456280-5456008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
133-399
               

               
Cow position:
               
chr9:5263394-5263668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
133-418
               

               
Cow position:
               
chr9:56065458-56065735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
133-429
               

               
Cow position:
               
chr9:12910508-12910201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
133-469
               

               
Cow position:
               
chr9:46981332-46980995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chr9:64637443-64637809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
20, 248
               

               
Conread position:
               
133-510
               

               
Cow position:
               
chr9:24887097-24887477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 153
               

               
Conread position:
               
133-524
               

               
Cow position:
               
chr9:41513529-41513913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
133-540
               

               
Cow position:
               
chr9:20322199-20321803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
133-566
               

               
Cow position:
               
chr9:13169773-13169337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 236
               

               
Conread position:
               
133-595
               

               
Cow position:
               
chr9:8998244-8998720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
133-595
               

               
Cow position:
               
chr9:20406547-20407000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
133-595
               

               
Cow position:
               
chr9:61738813-61739278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 210
               

               
Conread position:
               
134-276
               

               
Cow position:
               
chr9:20637268-20637415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
134-339
               

               
Cow position:
               
chr9:52763863-52763655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
134-354
               

               
Cow position:
               
chr9:3353256-3353475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
134-595
               

               
Cow position:
               
chr9:34958159-34957687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
135-553
               

               
Cow position:
               
chr9:5392967-5393373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
135-595
               

               
Cow position:
               
chr9:7409663-7410147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
135-595
               

               
Cow position:
               
chr9:31079182-31078719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
136-288
               

               
Cow position:
               
chr9:41716337-41716479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
136-293
               

               
Cow position:
               
chr9:23970999-23970837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
136-323
               

               
Cow position:
               
chr9:41781552-41781748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
136-435
               

               
Cow position:
               
chr9:3738326-3738019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
136-581
               

               
Cow position:
               
chr9:22152187-22151741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
136-595
               

               
Cow position:
               
chr9:20815768-20816206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
137-276
               

               
Cow position:
               
chr9:55354508-55354653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
137-301
               

               
Cow position:
               
chr9:55495087-55494919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
137-304
               

               
Cow position:
               
chr9:64064466-64064292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
137-341
               

               
Cow position:
               
chr9:20755857-20755644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
137-344
               

               
Cow position:
               
chr9:45728679-45728893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 5
               

               
Conread position:
               
137-346
               

               
Cow position:
               
chr9:38941535-38941315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
137-347
               

               
Cow position:
               
chr9:37199025-37199242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
137-361
               

               
Cow position:
               
chr9:13744032-13743801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 166
               

               
Conread position:
               
137-361
               

               
Cow position:
               
chr9:44396561-44396791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
137-366
               

               
Cow position:
               
chr9:40005374-40005612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr9:27355820-27356081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr9:27358606-27358867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
137-395
               

               
Cow position:
               
chr9:19034256-19034504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
137-399
               

               
Cow position:
               
chr9:31557829-31557561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
94, 185
               

               
Conread position:
               
137-409
               

               
Cow position:
               
chr9:39011572-39011300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 170
               

               
Conread position:
               
137-411
               

               
Cow position:
               
chr9:47446116-47445847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
150, 26
               

               
Conread position:
               
137-420
               

               
Cow position:
               
chr9:62151012-62151290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
137-422
               

               
Cow position:
               
chr9:4341262-4340979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
19, 160
               

               
Conread position:
               
137-424
               

               
Cow position:
               
chr9:26507016-26507318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
137-424
               

               
Cow position:
               
chr9:30123826-30124113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
137-427
               

               
Cow position:
               
chr9:50543530-50543224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
137-433
               

               
Cow position:
               
chr9:37677793-37678088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
137-436
               

               
Cow position:
               
chr9:42061997-42062316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
55, 189
               

               
Conread position:
               
137-466
               

               
Cow position:
               
chr9:35028265-35027938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
137-467
               

               
Cow position:
               
chr9:6839893-6840247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
137-475
               

               
Cow position:
               
chr9:1729777-1729432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 212
               

               
Conread position:
               
137-481
               

               
Cow position:
               
chr9:18217200-18216850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
137-482
               

               
Cow position:
               
chr9:50139182-50139532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 199
               

               
Conread position:
               
137-484
               

               
Cow position:
               
chr9:31814489-31814125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 275
               

               
Conread position:
               
137-484
               

               
Cow position:
               
chr9:38615063-38614713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
91, 181
               

               
Conread position:
               
137-495
               

               
Cow position:
               
chr9:33597883-33598245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 167
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr9:34375027-34374652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
137-566
               

               
Cow position:
               
chr9:52689712-52689291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
137-571
               

               
Cow position:
               
chr9:4268085-4267652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 184
               

               
Conread position:
               
137-591
               

               
Cow position:
               
chr9:61022519-61022970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
137-595
               

               
Cow position:
               
chr9:21888067-21888534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
137-595
               

               
Cow position:
               
chr9:27697835-27697366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 205
               

               
Conread position:
               
137-595
               

               
Cow position:
               
chr9:31640426-31639952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
138-277
               

               
Cow position:
               
chr9:36457897-36458044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
138-294
               

               
Cow position:
               
chr9:43342229-43342389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 133
               

               
Conread position:
               
138-295
               

               
Cow position:
               
chr9:32955786-32955623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
138-321
               

               
Cow position:
               
chr9:5469769-5469954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
138-344
               

               
Cow position:
               
chr9:50310862-50310659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
138-413
               

               
Cow position:
               
chr9:8901328-8901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
138-426
               

               
Cow position:
               
chr9:62668148-62668447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
138-439
               

               
Cow position:
               
chr9:33237295-33237600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
138-463
               

               
Cow position:
               
chr9:43623166-43623492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
24, 159
               

               
Conread position:
               
138-466
               

               
Cow position:
               
chr9:15225398-15225055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 280
               

               
Conread position:
               
138-512
               

               
Cow position:
               
chr9:41282915-41283310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
138-520
               

               
Cow position:
               
chr9:8337925-8338320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 214
               

               
Conread position:
               
138-522
               

               
Cow position:
               
chr9:60110150-60110526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
138-523
               

               
Cow position:
               
chr9:17310662-17310269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
138-589
               

               
Cow position:
               
chr9:823860-824314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
138-595
               

               
Cow position:
               
chr9:61997703-61997232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
139-270
               

               
Cow position:
               
chr9:52807502-52807369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
139-338
               

               
Cow position:
               
chr9:18828153-18827946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
139-462
               

               
Cow position:
               
chr9:9573224-9573566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
139-479
               

               
Cow position:
               
chr9:56088168-56087821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
139-506
               

               
Cow position:
               
chr9:64559983-64559610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 240
               

               
Conread position:
               
139-510
               

               
Cow position:
               
chr9:28354418-28354813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
139-589
               

               
Cow position:
               
chr9:21460250-21459796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
139-591
               

               
Cow position:
               
chr9:44467441-44466988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
139-595
               

               
Cow position:
               
chr9:9516851-9516406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
140-289
               

               
Cow position:
               
chr9:56827376-56827536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
140-321
               

               
Cow position:
               
chr9:9502989-9503171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
140-503
               

               
Cow position:
               
chr9:51620346-51620708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 238
               

               
Conread position:
               
140-520
               

               
Cow position:
               
chr9:49764548-49764946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
140-524
               

               
Cow position:
               
chr9:30138021-30138419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
140-575
               

               
Cow position:
               
chr9:26435158-26434719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
140-581
               

               
Cow position:
               
chr9:18253011-18252579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 94
               

               
Conread position:
               
140-595
               

               
Cow position:
               
chr9:18380765-18381225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
140-595
               

               
Cow position:
               
chr9:55075227-55074770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 283
               

               
Conread position:
               
141-258
               

               
Cow position:
               
chr9:2951607-2951481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
141-343
               

               
Cow position:
               
chr9:23788340-23788551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
141-361
               

               
Cow position:
               
chr9:37934335-37934105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
141-493
               

               
Cow position:
               
chr9:38846431-38846087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
142-292
               

               
Cow position:
               
chr9:23797139-23797294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
142-295
               

               
Cow position:
               
chr9:34888392-34888238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
142-320
               

               
Cow position:
               
chr9:58662146-58662329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
142-350
               

               
Cow position:
               
chr9:38645442-38645223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
142-362
               

               
Cow position:
               
chr9:59849569-59849360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
142-595
               

               
Cow position:
               
chr9:17411291-17410824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 299
               

               
Conread position:
               
143-285
               

               
Cow position:
               
chr9:34484497-34484646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
143-290
               

               
Cow position:
               
chr9:9243454-9243595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
143-296
               

               
Cow position:
               
chr9:623260-623414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
143-345
               

               
Cow position:
               
chr9:52598818-52598608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
143-505
               

               
Cow position:
               
chr9:34902197-34901842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
143-527
               

               
Cow position:
               
chr9:32307328-32306943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 238
               

               
Conread position:
               
143-588
               

               
Cow position:
               
chr9:64091582-64092044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 249
               

               
Conread position:
               
144-418
               

               
Cow position:
               
chr9:8524766-8525021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
145-396
               

               
Cow position:
               
chr9:49293238-49292981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
19, 168
               

               
Conread position:
               
146-527
               

               
Cow position:
               
chr9:36410441-36410055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
146-527
               

               
Cow position:
               
chr9:40542042-40542410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 88
               

               
Conread position:
               
146-595
               

               
Cow position:
               
chr9:64050655-64050195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
147-379
               

               
Cow position:
               
chr9:52839972-52839736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
147-589
               

               
Cow position:
               
chr9:33219042-33218594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
147-595
               

               
Cow position:
               
chr9:47906370-47905915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 6
               

               
Conread position:
               
148-516
               

               
Cow position:
               
chr9:58972585-58972194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
151-326
               

               
Cow position:
               
chr9:8834216-8834033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 100
               

               
Conread position:
               
151-328
               

               
Cow position:
               
chr9:64629451-64629275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
151-579
               

               
Cow position:
               
chr9:19713991-19714419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 146
               

               
Conread position:
               
151-595
               

               
Cow position:
               
chr9:14796859-14796419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 139
               

               
Conread position:
               
152-377
               

               
Cow position:
               
chr9:2976800-2977011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
152-589
               

               
Cow position:
               
chr9:45756276-45756711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 230
               

               
Conread position:
               
153-289
               

               
Cow position:
               
chr9:31098972-31098829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
153-295
               

               
Cow position:
               
chr9:34973798-34973651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
153-296
               

               
Cow position:
               
chr9:12337816-12337964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
153-462
               

               
Cow position:
               
chr9:34911067-34911391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
12, 243
               

               
Conread position:
               
153-487
               

               
Cow position:
               
chr9:25921737-25922079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
31, 237
               

               
Conread position:
               
153-528
               

               
Cow position:
               
chr9:50075978-50076363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 226
               

               
Conread position:
               
153-584
               

               
Cow position:
               
chr9:14975005-14974573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 142
               

               
Conread position:
               
154-511
               

               
Cow position:
               
chr9:47472600-47472977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
154-581
               

               
Cow position:
               
chr9:62357613-62357177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
154-595
               

               
Cow position:
               
chr9:5594418-5594865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 188
               

               
Conread position:
               
154-595
               

               
Cow position:
               
chr9:62656718-62657157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 177
               

               
Conread position:
               
155-266
               

               
Cow position:
               
chr9:53736728-53736616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
155-272
               

               
Cow position:
               
chr9:35793593-35793715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
155-285
               

               
Cow position:
               
chr9:25628000-25628135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
155-293
               

               
Cow position:
               
chr9:5164069-5163927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
155-295
               

               
Cow position:
               
chr9:24652320-24652465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
155-296
               

               
Cow position:
               
chr9:52258146-52258005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
155-315
               

               
Cow position:
               
chr9:3343665-3343834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
155-340
               

               
Cow position:
               
chr9:28378884-28379080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
155-342
               

               
Cow position:
               
chr9:45171307-45171106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr9:34283870-34284092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
155-376
               

               
Cow position:
               
chr9:10819912-10819686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
155-428
               

               
Cow position:
               
chr9:35105874-35105582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 203
               

               
Conread position:
               
155-447
               

               
Cow position:
               
chr9:43443720-43444011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 174
               

               
Conread position:
               
155-527
               

               
Cow position:
               
chr9:55084385-55084000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
155-554
               

               
Cow position:
               
chr9:64155935-64155532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
155-582
               

               
Cow position:
               
chr9:5219256-5218828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 209
               

               
Conread position:
               
155-594
               

               
Cow position:
               
chr9:38961512-38961073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 21
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr9:5763714-5763265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr9:8534780-8534321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 185
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr9:22434012-22433578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 139
               

               
Conread position:
               
155-595
               

               
Cow position:
               
chr9:63745731-63746166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr9:52000936-52001291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
156-533
               

               
Cow position:
               
chr9:8723711-8724104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
156-595
               

               
Cow position:
               
chr9:5245770-5246210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 197
               

               
Conread position:
               
157-281
               

               
Cow position:
               
chr9:34014331-34014202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
157-289
               

               
Cow position:
               
chr9:5072915-5072783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
157-411
               

               
Cow position:
               
chr9:31403329-31403059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
157-546
               

               
Cow position:
               
chr9:26345051-26344669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
17, 210
               

               
Conread position:
               
157-567
               

               
Cow position:
               
chr9:32371833-32371430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
158-293
               

               
Cow position:
               
chr9:26859274-26859407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
158-493
               

               
Cow position:
               
chr9:55889734-55890072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
159-442
               

               
Cow position:
               
chr9:49416907-49417198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 226
               

               
Conread position:
               
160-449
               

               
Cow position:
               
chr9:17677189-17676903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 135
               

               
Conread position:
               
160-595
               

               
Cow position:
               
chr9:25964911-25964459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
162-582
               

               
Cow position:
               
chr9:7362951-7363387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 179
               

               
Conread position:
               
163-337
               

               
Cow position:
               
chr9:55532738-55532922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
22, 165
               

               
Conread position:
               
163-428
               

               
Cow position:
               
chr9:60027121-60027392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
163-589
               

               
Cow position:
               
chr9:5509650-5510083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
163-595
               

               
Cow position:
               
chr9:3220060-3220484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 238
               

               
Conread position:
               
164-294
               

               
Cow position:
               
chr9:42298117-42298247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
164-436
               

               
Cow position:
               
chr9:19493541-19493259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 225
               

               
Conread position:
               
164-589
               

               
Cow position:
               
chr9:24872761-24873199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
165-400
               

               
Cow position:
               
chr9:63896467-63896704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
167-595
               

               
Cow position:
               
chr9:44915169-44914747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 112
               

               
Conread position:
               
168-296
               

               
Cow position:
               
chr9:1349977-1350106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
169-475
               

               
Cow position:
               
chr9:32815584-32815882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
169-496
               

               
Cow position:
               
chr9:39577669-39577999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
169-512
               

               
Cow position:
               
chr9:29684074-29684427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
169-589
               

               
Cow position:
               
chr9:21030238-21030676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
170-339
               

               
Cow position:
               
chr9:40776729-40776907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
171-379
               

               
Cow position:
               
chr9:54178488-54178283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
174-589
               

               
Cow position:
               
chr9:1949852-1950281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 189
               

               
Conread position:
               
175-516
               

               
Cow position:
               
chr9:1084925-1084570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 313
               

               
Conread position:
               
177-361
               

               
Cow position:
               
chr9:53326812-53326619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 72
               

               
Conread position:
               
177-595
               

               
Cow position:
               
chr9:26993238-26992814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
8, 110
               

               
Conread position:
               
178-595
               

               
Cow position:
               
chr9:24997578-24997139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 35
               

               
Conread position:
               
183-374
               

               
Cow position:
               
chr9:43936890-43937084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
50, 109
               

               
Conread position:
               
183-591
               

               
Cow position:
               
chr9:20989513-20989095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 120
               

               
Conread position:
               
183-595
               

               
Cow position:
               
chr9:17928702-17929121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 352
               

               
Conread position:
               
184-495
               

               
Cow position:
               
chr9:11193230-11192904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
46, 145
               

               
Conread position:
               
184-589
               

               
Cow position:
               
chr9:5162104-5161715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
185-398
               

               
Cow position:
               
chr9:1756198-1755975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
185-398
               

               
Cow position:
               
chr9:36857532-36857744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
48, 109
               

               
Conread position:
               
185-398
               

               
Cow position:
               
chr9:62471627-62471837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
185-423
               

               
Cow position:
               
chr9:40543368-40543130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 42
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:47500265-47500003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 254
               

               
Conread position:
               
185-452
               

               
Cow position:
               
chr9:44834016-44833744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
48, 228
               

               
Conread position:
               
185-475
               

               
Cow position:
               
chr9:49709794-49710088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
185-581
               

               
Cow position:
               
chr9:49983142-49982746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 101
               

               
Conread position:
               
185-595
               

               
Cow position:
               
chr9:20681459-20681044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 238
               

               
Conread position:
               
185-595
               

               
Cow position:
               
chr9:24726718-24726314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
185-595
               

               
Cow position:
               
chr9:31077723-31077313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
189-451
               

               
Cow position:
               
chr9:53211540-53211277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
190-583
               

               
Cow position:
               
chr9:22114683-22114287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 83
               

               
Conread position:
               
190-587
               

               
Cow position:
               
chr9:35375378-35375778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
191-595
               

               
Cow position:
               
chr9:35904792-35904386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 193
               

               
Conread position:
               
192-368
               

               
Cow position:
               
chr9:51131414-51131601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
192-370
               

               
Cow position:
               
chr9:11969140-11969328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
192-589
               

               
Cow position:
               
chr9:35202833-35203258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
192-589
               

               
Cow position:
               
chr9:48107162-48106758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
194-371
               

               
Cow position:
               
chr9:8306810-8306993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
194-436
               

               
Cow position:
               
chr9:4512444-4512691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 121
               

               
Conread position:
               
194-451
               

               
Cow position:
               
chr9:43048657-43048406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
181, 36
               

               
Conread position:
               
194-456
               

               
Cow position:
               
chr9:3371529-3371804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
194-461
               

               
Cow position:
               
chr9:6338749-6339032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
194-515
               

               
Cow position:
               
chr9:29191303-29191625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
194-588
               

               
Cow position:
               
chr9:15983116-15982724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 100
               

               
Conread position:
               
194-588
               

               
Cow position:
               
chr9:53258098-53257709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
194-595
               

               
Cow position:
               
chr9:8997516-8997921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
198-436
               

               
Cow position:
               
chr9:8317488-8317262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
201-374
               

               
Cow position:
               
chr9:11377975-11377797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
201-418
               

               
Cow position:
               
chr9:16121131-16121355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 179
               

               
Conread position:
               
201-424
               

               
Cow position:
               
chr9:27029742-27029510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
32, 159
               

               
Conread position:
               
201-495
               

               
Cow position:
               
chr9:43207411-43207115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
31, 108
               

               
Conread position:
               
201-524
               

               
Cow position:
               
chr9:35849867-35850192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
201-595
               

               
Cow position:
               
chr9:13221929-13221531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
201-595
               

               
Cow position:
               
chr9:16180421-16180016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
201-595
               

               
Cow position:
               
chr9:43301425-43301824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
203-409
               

               
Cow position:
               
chr9:41853397-41853620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
204-583
               

               
Cow position:
               
chr9:19539066-19539449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
208-449
               

               
Cow position:
               
chr9:30162126-30162381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 182
               

               
Conread position:
               
208-588
               

               
Cow position:
               
chr9:38343860-38344253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 177
               

               
Conread position:
               
210-511
               

               
Cow position:
               
chr9:6225482-6225166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
210-520
               

               
Cow position:
               
chr9:9416423-9416117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
211-527
               

               
Cow position:
               
chr9:35533980-35533655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 206
               

               
Conread position:
               
213-487
               

               
Cow position:
               
chr9:28735463-28735735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
214-595
               

               
Cow position:
               
chr9:1952294-1951905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 172
               

               
Conread position:
               
217-490
               

               
Cow position:
               
chr9:50703129-50702857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
217-522
               

               
Cow position:
               
chr9:5399719-5400008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 81
               

               
Conread position:
               
221-462
               

               
Cow position:
               
chr9:33038475-33038227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
229-511
               

               
Cow position:
               
chr9:5531937-5532233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
229-589
               

               
Cow position:
               
chr9:1997131-1997488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 118
               

               
Conread position:
               
229-595
               

               
Cow position:
               
chr9:8869148-8868771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 119
               

               
Conread position:
               
229-595
               

               
Cow position:
               
chr9:18163165-18162787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
230-422
               

               
Cow position:
               
chr9:31270775-31270969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
230-462
               

               
Cow position:
               
chr9:32710925-32711163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
64, 150
               

               
Conread position:
               
233-595
               

               
Cow position:
               
chr9:26390770-26391129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
237-505
               

               
Cow position:
               
chr9:40105470-40105751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
237-507
               

               
Cow position:
               
chr9:4128778-4128506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 141
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr9:30749586-30749306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chr9:16538812-16538491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
133, 98
               

               
Conread position:
               
237-589
               

               
Cow position:
               
chr9:34919257-34918925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 141
               

               
Conread position:
               
237-594
               

               
Cow position:
               
chr9:54998026-54997662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 147
               

               
Conread position:
               
238-595
               

               
Cow position:
               
chr9:10092390-10092031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 192
               

               
Conread position:
               
242-527
               

               
Cow position:
               
chr9:29035028-29034739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
242-589
               

               
Cow position:
               
chr9:36623423-36623095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 37
               

               
Conread position:
               
243-589
               

               
Cow position:
               
chr9:59172371-59172021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
245-595
               

               
Cow position:
               
chr9:17785445-17785094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 45
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr9:40603957-40604191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
246-585
               

               
Cow position:
               
chr9:20738708-20739058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 167
               

               
Conread position:
               
247-406
               

               
Cow position:
               
chr9:4324144-4323983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
247-450
               

               
Cow position:
               
chr9:6118136-6117928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
247-523
               

               
Cow position:
               
chr9:64517088-64516804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
247-589
               

               
Cow position:
               
chr9:53602440-53602768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 77
               

               
Conread position:
               
252-428
               

               
Cow position:
               
chr9:14358181-14358359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
252-456
               

               
Cow position:
               
chr9:50667439-50667649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
252-527
               

               
Cow position:
               
chr9:37000043-36999764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
252-581
               

               
Cow position:
               
chr9:19541929-19542259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
252-587
               

               
Cow position:
               
chr9:18002936-18002595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 292
               

               
Conread position:
               
252-589
               

               
Cow position:
               
chr9:34000602-34000253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
252-595
               

               
Cow position:
               
chr9:25657527-25657889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
252-595
               

               
Cow position:
               
chr9:27077224-27076898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
252-595
               

               
Cow position:
               
chr9:57951303-57950966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
255-422
               

               
Cow position:
               
chr9:51011515-51011353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
256-595
               

               
Cow position:
               
chr9:30664758-30664417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 284
               

               
Conread position:
               
256-595
               

               
Cow position:
               
chr9:32812371-32812711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 120
               

               
Conread position:
               
256-595
               

               
Cow position:
               
chr9:49279486-49279816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 135
               

               
Conread position:
               
257-439
               

               
Cow position:
               
chr9:11198320-11198135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
257-527
               

               
Cow position:
               
chr9:35306095-35305820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
39, 138
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr9:10877842-10877584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
262-588
               

               
Cow position:
               
chr9:58439754-58439428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
273-595
               

               
Cow position:
               
chr9:1984485-1984141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
282-554
               

               
Cow position:
               
chr9:41416406-41416674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 17
               

               
Conread position:
               
284-595
               

               
Cow position:
               
chr9:62361179-62360864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
285-532
               

               
Cow position:
               
chr9:36066962-36067207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
290-533
               

               
Cow position:
               
chr9:45171107-45170866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
299-491
               

               
Cow position:
               
chr9:38875507-38875314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
120, 79
               

               
Conread position:
               
299-535
               

               
Cow position:
               
chr9:48343671-48343906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
300-589
               

               
Cow position:
               
chr9:42998397-42998103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 76
               

               
Conread position:
               
300-595
               

               
Cow position:
               
chr9:9490863-9491153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
300-595
               

               
Cow position:
               
chr9:42585560-42585261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
301-535
               

               
Cow position:
               
chr9:20319008-20318773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
301-595
               

               
Cow position:
               
chr9:20394048-20393763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
325-595
               

               
Cow position:
               
chr9:31662559-31662831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
326-436
               

               
Cow position:
               
chr9:18827817-18827926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
327-585
               

               
Cow position:
               
chr9:22616722-22616974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
328-595
               

               
Cow position:
               
chr9:18140200-18139930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
331-542
               

               
Cow position:
               
chr9:1350345-1350134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
366-588
               

               
Cow position:
               
chr9:60081290-60081502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 0
               
Show alignments to all cow chromosomes.