Cow genome map
| Conread name: | rssp11_a9.y1 |
| Conread position: | 1-192 |
| Cow position: | chr12:30662032-30662221 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 1-207 |
| Cow position: | chr12:22047387-22047180 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 1-215 |
| Cow position: | chr12:40270177-40270383 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 1-216 |
| Cow position: | chr12:34007220-34007001 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 1-221 |
| Cow position: | chr12:6410819-6411031 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 187, 20 |
| Conread position: | 1-221 |
| Cow position: | chr12:27562914-27563136 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 1-224 |
| Cow position: | chr12:28650870-28650651 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 1-233 |
| Cow position: | chr12:42254582-42254343 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 1-235 |
| Cow position: | chr12:29995545-29995779 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 105, 8 |
| Conread position: | 1-242 |
| Cow position: | chr12:8868962-8869206 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 1-245 |
| Cow position: | chr12:6226735-6226958 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-245 |
| Cow position: | chr12:42966914-42966674 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 1-246 |
| Cow position: | chr12:34385598-34385842 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 22 |
| Conread position: | 1-246 |
| Cow position: | chr12:40158323-40158564 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 108, 22 |
| Conread position: | 1-246 |
| Cow position: | chr12:46143739-46143494 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 2-224 |
| Cow position: | chr12:8943306-8943526 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 19 |
| Conread position: | 9-246 |
| Cow position: | chr12:30578545-30578787 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 12-223 |
| Cow position: | chr12:21922339-21922131 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 80, 31 |
| Conread position: | 14-245 |
| Cow position: | chr12:41979392-41979626 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 20-243 |
| Cow position: | chr12:3579184-3578955 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 21-208 |
| Cow position: | chr12:4134570-4134375 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 22-224 |
| Cow position: | chr12:46635046-46635251 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 22-243 |
| Cow position: | chr12:3039404-3039189 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 172, 62 |
| Conread position: | 24-210 |
| Cow position: | chr12:11109662-11109478 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 24-219 |
| Cow position: | chr12:42160650-42160854 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 50, 174 |
| Conread position: | 24-223 |
| Cow position: | chr12:25456015-25455809 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 24-226 |
| Cow position: | chr12:3076720-3076931 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 24-235 |
| Cow position: | chr12:941533-941313 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 103, 190 |
| Conread position: | 24-246 |
| Cow position: | chr12:16359775-16359546 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 24-246 |
| Cow position: | chr12:18076430-18076208 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 24-246 |
| Cow position: | chr12:19154719-19154936 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 24-246 |
| Cow position: | chr12:19508669-19508897 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 213 |
| Conread position: | 26-155 |
| Cow position: | chr12:38511944-38512076 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 26-157 |
| Cow position: | chr12:15163044-15162914 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 26-174 |
| Cow position: | chr12:23797997-23797850 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 26-181 |
| Cow position: | chr12:46673335-46673489 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 26-183 |
| Cow position: | chr12:18766084-18766243 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 44 |
| Conread position: | 26-183 |
| Cow position: | chr12:29161919-29162073 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 26-209 |
| Cow position: | chr12:32169435-32169245 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 94, 186 |
| Conread position: | 26-215 |
| Cow position: | chr12:3510461-3510268 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 101, 43 |
| Conread position: | 26-219 |
| Cow position: | chr12:44517842-44518040 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 157, 19 |
| Conread position: | 26-221 |
| Cow position: | chr12:41083963-41083763 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 26-229 |
| Cow position: | chr12:30805748-30805543 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 157, 51 |
| Conread position: | 26-233 |
| Cow position: | chr12:30745609-30745398 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 26-244 |
| Cow position: | chr12:40910395-40910616 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 26-245 |
| Cow position: | chr12:5800929-5800711 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 26-245 |
| Cow position: | chr12:22260930-22261141 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 156, 51 |
| Conread position: | 26-245 |
| Cow position: | chr12:31328183-31328405 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 180 |
| Conread position: | 26-246 |
| Cow position: | chr12:6698676-6698450 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 123 |
| Conread position: | 26-246 |
| Cow position: | chr12:19869363-19869144 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 164, 51 |
| Conread position: | 26-246 |
| Cow position: | chr12:28011005-28011227 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 53 |
| Conread position: | 27-205 |
| Cow position: | chr12:23154569-23154753 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 27-208 |
| Cow position: | chr12:15358226-15358038 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 27-212 |
| Cow position: | chr12:32391742-32391551 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 27-233 |
| Cow position: | chr12:26782781-26782566 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 27-245 |
| Cow position: | chr12:30919310-30919108 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 199, 43 |
| Conread position: | 27-246 |
| Cow position: | chr12:3568838-3568622 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 30-209 |
| Cow position: | chr12:31841332-31841150 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 95, 160 |
| Conread position: | 30-211 |
| Cow position: | chr12:41473981-41473802 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 158, 47 |
| Conread position: | 30-214 |
| Cow position: | chr12:41091426-41091233 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 30-236 |
| Cow position: | chr12:42181248-42181459 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 47 |
| Conread position: | 30-245 |
| Cow position: | chr12:29484001-29484215 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 31-195 |
| Cow position: | chr12:12331613-12331774 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 31-236 |
| Cow position: | chr12:4021488-4021703 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 31-244 |
| Cow position: | chr12:35310785-35310999 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 157, 38 |
| Conread position: | 31-245 |
| Cow position: | chr12:19420040-19420259 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 31-246 |
| Cow position: | chr12:7977932-7977722 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 157, 95 |
| Conread position: | 31-246 |
| Cow position: | chr12:9465565-9465788 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 33-205 |
| Cow position: | chr12:12178809-12178634 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 33-224 |
| Cow position: | chr12:36954487-36954681 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 34-243 |
| Cow position: | chr12:47929103-47928886 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 35-221 |
| Cow position: | chr12:4866707-4866513 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 35-242 |
| Cow position: | chr12:7881831-7882044 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 58, 201 |
| Conread position: | 35-246 |
| Cow position: | chr12:12976292-12976514 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 35-246 |
| Cow position: | chr12:36118862-36118643 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 36-246 |
| Cow position: | chr12:9482417-9482623 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 104, 32 |
| Conread position: | 41-192 |
| Cow position: | chr12:29780020-29780173 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 41-244 |
| Cow position: | chr12:37123390-37123187 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 147, 36 |
| Conread position: | 41-244 |
| Cow position: | chr12:44905528-44905311 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 41-245 |
| Cow position: | chr12:7960697-7960886 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 147, 60 |
| Conread position: | 43-224 |
| Cow position: | chr12:5707992-5707826 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 52-246 |
| Cow position: | chr12:42602368-42602564 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 62-246 |
| Cow position: | chr12:15173668-15173491 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 47 |
Show alignments to all cow chromosomes.