Cow genome map

Conread name: rssp11_a9.y1

Conread position: 1-159
Cow position: chr18:219255-219100 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 19

Conread position: 1-190
Cow position: chr18:37382172-37382361 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 127, 20

Conread position: 1-197
Cow position: chr18:2592247-2592446 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 112, 20

Conread position: 1-206
Cow position: chr18:51656123-51656335 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 73, 20

Conread position: 1-219
Cow position: chr18:56159382-56159170 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 184, 19

Conread position: 1-223
Cow position: chr18:46048680-46048466 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 8, 0

Conread position: 1-225
Cow position: chr18:3115384-3115159 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 1-238
Cow position: chr18:2099428-2099667 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 187, 29

Conread position: 1-245
Cow position: chr18:47314368-47314619 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 108, 20

Conread position: 1-246
Cow position: chr18:32121141-32121383 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 68, 22

Conread position: 1-246
Cow position: chr18:33272854-33272626 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 187, 20

Conread position: 1-246
Cow position: chr18:51405985-51406217 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 32, 22

Conread position: 2-245
Cow position: chr18:20174209-20174451 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 69, 19

Conread position: 3-192
Cow position: chr18:21768550-21768362 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 117, 18

Conread position: 9-186
Cow position: chr18:56192676-56192849 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 118, 14

Conread position: 10-244
Cow position: chr18:49665242-49665477 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 178, 60

Conread position: 14-246
Cow position: chr18:39662691-39662455 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 174, 95

Conread position: 15-233
Cow position: chr18:15880947-15881166 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 174, 55

Conread position: 20-225
Cow position: chr18:39875353-39875561 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 168, 57

Conread position: 20-246
Cow position: chr18:18627416-18627649 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 100, 0

Conread position: 21-219
Cow position: chr18:6609953-6610153 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 92

Conread position: 22-243
Cow position: chr18:55701748-55701965 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 53, 32

Conread position: 24-171
Cow position: chr18:35908526-35908379 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 112

Conread position: 24-193
Cow position: chr18:24945906-24946078 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 7

Conread position: 24-223
Cow position: chr18:4316213-4316008 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 108, 0

Conread position: 24-227
Cow position: chr18:4858001-4858212 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 182

Conread position: 24-242
Cow position: chr18:23447179-23447401 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 164, 0

Conread position: 24-245
Cow position: chr18:7956045-7955827 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 101, 56

Conread position: 24-246
Cow position: chr18:20864892-20864665 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 203

Conread position: 24-246
Cow position: chr18:52637619-52637856 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 50, 0

Conread position: 26-166
Cow position: chr18:28823067-28823208 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 26-184
Cow position: chr18:35582201-35582359 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 80, 51

Conread position: 26-192
Cow position: chr18:5711767-5711932 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 86, 0

Conread position: 26-212
Cow position: chr18:25282653-25282843 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 122, 53

Conread position: 26-215
Cow position: chr18:11166880-11166688 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 162, 0

Conread position: 26-217
Cow position: chr18:16847592-16847405 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 120, 80

Conread position: 26-219
Cow position: chr18:22214381-22214191 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 13, 20

Conread position: 26-223
Cow position: chr18:39115239-39115443 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 101, 0

Conread position: 26-233
Cow position: chr18:20126205-20125994 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 53

Conread position: 26-236
Cow position: chr18:4624529-4624741 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 85

Conread position: 26-243
Cow position: chr18:3098418-3098631 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 83

Conread position: 26-243
Cow position: chr18:11867240-11867034 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 170
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 44, 0

Conread position: 26-243
Cow position: chr18:35058239-35058021 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 162, 80

Conread position: 26-245
Cow position: chr18:4182289-4182508 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 99, 41

Conread position: 26-245
Cow position: chr18:12117942-12118166 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 92, 41

Conread position: 26-245
Cow position: chr18:31672610-31672824 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 45, 78

Conread position: 26-245
Cow position: chr18:33606531-33606309 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 96

Conread position: 26-245
Cow position: chr18:36458833-36458613 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 81

Conread position: 26-245
Cow position: chr18:56168019-56168238 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 51

Conread position: 26-246
Cow position: chr18:13172616-13172847 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 26-246
Cow position: chr18:19646078-19645856 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 27, 20

Conread position: 26-246
Cow position: chr18:55552872-55552643 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 27-177
Cow position: chr18:21205261-21205116 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 27-223
Cow position: chr18:20271121-20271319 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 154
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 161, 54

Conread position: 27-234
Cow position: chr18:26998780-26998554 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 27-243
Cow position: chr18:17005156-17004931 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 52, 0

Conread position: 27-244
Cow position: chr18:2774702-2774907 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 27-244
Cow position: chr18:26286809-26286595 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 113, 50

Conread position: 27-246
Cow position: chr18:5189789-5190001 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 52, 89

Conread position: 27-246
Cow position: chr18:11618377-11618160 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 52

Conread position: 27-246
Cow position: chr18:21528305-21528083 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 83

Conread position: 27-246
Cow position: chr18:39001903-39002117 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 161, 82

Conread position: 29-245
Cow position: chr18:33793604-33793383 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 41, 93

Conread position: 30-223
Cow position: chr18:4648845-4649034 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 41, 81

Conread position: 30-233
Cow position: chr18:54646375-54646179 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 156, 45

Conread position: 30-239
Cow position: chr18:27388449-27388239 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 66

Conread position: 30-245
Cow position: chr18:6290683-6290463 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 174
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 88, 49

Conread position: 30-245
Cow position: chr18:9365812-9365591 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 49

Conread position: 30-246
Cow position: chr18:28794174-28794388 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 75

Conread position: 31-184
Cow position: chr18:48453589-48453436 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 97, 38

Conread position: 31-215
Cow position: chr18:267920-268102 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 152, 77

Conread position: 31-241
Cow position: chr18:37002528-37002314 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 89, 46

Conread position: 31-244
Cow position: chr18:7951010-7950793 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 81, 39

Conread position: 31-245
Cow position: chr18:37023658-37023877 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 49

Conread position: 31-245
Cow position: chr18:48407688-48407468 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 99, 49

Conread position: 31-246
Cow position: chr18:24342516-24342303 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 141, 66

Conread position: 33-215
Cow position: chr18:52632508-52632696 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 79, 43

Conread position: 34-219
Cow position: chr18:1144291-1144488 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 37, 152

Conread position: 34-240
Cow position: chr18:1733301-1733507 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 37, 95

Conread position: 34-245
Cow position: chr18:11322495-11322268 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 37, 0

Conread position: 35-242
Cow position: chr18:19362394-19362604 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 172

Conread position: 35-244
Cow position: chr18:20998725-20998934 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 94, 47

Conread position: 36-245
Cow position: chr18:45395896-45395672 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 67

Conread position: 39-178
Cow position: chr18:4495999-4496139 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 39-223
Cow position: chr18:42747483-42747297 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 92

Conread position: 39-245
Cow position: chr18:51178857-51179066 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 11, 0

Conread position: 39-246
Cow position: chr18:29371756-29371545 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 149, 133

Conread position: 41-192
Cow position: chr18:19761586-19761433 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 41-219
Cow position: chr18:48290551-48290733 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 41-236
Cow position: chr18:4625787-4625589 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 33, 151

Conread position: 41-245
Cow position: chr18:2608843-2609054 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 74, 7

Conread position: 41-245
Cow position: chr18:41270981-41270766 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 172
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 173

Conread position: 41-246
Cow position: chr18:10575993-10575790 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 38, 0

Conread position: 41-246
Cow position: chr18:56172131-56172342 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 84, 67

Conread position: 47-245
Cow position: chr18:22237078-22237276 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 132, 68

Conread position: 48-245
Cow position: chr18:35295444-35295241 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 61, 0

Conread position: 51-192
Cow position: chr18:52402641-52402784 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 58-246
Cow position: chr18:2849386-2849583 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 59-245
Cow position: chr18:29264586-29264772 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 131

Conread position: 62-246
Cow position: chr18:2270636-2270825 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 65, 17

Show alignments to all cow chromosomes.