Cow genome map

Conread name: rssp11_a9.y1

Conread position: 1-171
Cow position: chr23:1742312-1742147 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-173
Cow position: chr23:18296764-18296595 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 70, 20

Conread position: 1-192
Cow position: chr23:27544784-27544601 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 67, 20

Conread position: 1-192
Cow position: chr23:35254283-35254469 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 138, 19

Conread position: 1-206
Cow position: chr23:18402333-18402534 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 187, 20

Conread position: 1-213
Cow position: chr23:26632761-26632545 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 124, 25

Conread position: 1-216
Cow position: chr23:809123-808904 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 8

Conread position: 1-218
Cow position: chr23:4608426-4608642 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 122, 20

Conread position: 1-219
Cow position: chr23:4562841-4562627 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 118, 20

Conread position: 1-243
Cow position: chr23:1647574-1647334 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 185, 20

Conread position: 1-243
Cow position: chr23:38208681-38208428 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 68, 20

Conread position: 1-244
Cow position: chr23:4528924-4529178 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 96, 30

Conread position: 1-244
Cow position: chr23:5162383-5162141 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 70, 20

Conread position: 1-245
Cow position: chr23:1337345-1337601 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 126, 20

Conread position: 1-245
Cow position: chr23:1923881-1924120 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-245
Cow position: chr23:4726743-4726515 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 184, 20

Conread position: 1-245
Cow position: chr23:10554053-10554298 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 17

Conread position: 1-245
Cow position: chr23:11129186-11128945 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 83, 19

Conread position: 1-245
Cow position: chr23:13520406-13520171 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 121, 22

Conread position: 1-245
Cow position: chr23:13599300-13599061 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 119, 22

Conread position: 1-245
Cow position: chr23:18367655-18367409 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 19

Conread position: 1-245
Cow position: chr23:38455226-38455472 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 190
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 117, 20

Conread position: 1-246
Cow position: chr23:9734370-9734131 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-246
Cow position: chr23:10014494-10014260 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 119, 22

Conread position: 1-246
Cow position: chr23:33601572-33601808 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 20

Conread position: 3-203
Cow position: chr23:16700085-16700284 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 73, 18

Conread position: 10-245
Cow position: chr23:5151930-5151692 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 117, 16

Conread position: 14-246
Cow position: chr23:479477-479239 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 81, 17

Conread position: 20-244
Cow position: chr23:26741516-26741736 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 94

Conread position: 21-199
Cow position: chr23:5723484-5723304 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 68, 0

Conread position: 23-245
Cow position: chr23:15702565-15702792 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 24-169
Cow position: chr23:30585725-30585870 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 51

Conread position: 24-192
Cow position: chr23:10868691-10868530 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 26

Conread position: 24-192
Cow position: chr23:11081012-11080850 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 24-219
Cow position: chr23:8006179-8005980 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 50, 189

Conread position: 24-228
Cow position: chr23:187114-186901 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 101, 55

Conread position: 24-232
Cow position: chr23:14838804-14839009 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 162, 56

Conread position: 24-237
Cow position: chr23:2316735-2316527 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 50, 107

Conread position: 24-240
Cow position: chr23:6720346-6720558 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 163, 62

Conread position: 24-240
Cow position: chr23:31601515-31601740 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 24-245
Cow position: chr23:28118163-28118388 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 0

Conread position: 24-245
Cow position: chr23:39309178-39309401 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 75, 79

Conread position: 24-246
Cow position: chr23:2179706-2179935 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 77

Conread position: 24-246
Cow position: chr23:5870243-5870475 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 51, 0

Conread position: 24-246
Cow position: chr23:18802335-18802561 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 50, 43

Conread position: 25-225
Cow position: chr23:19758688-19758889 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 65, 52

Conread position: 25-243
Cow position: chr23:4972716-4972501 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 54, 20

Conread position: 26-179
Cow position: chr23:1068378-1068531 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 65, 51

Conread position: 26-182
Cow position: chr23:24704216-24704058 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 0

Conread position: 26-183
Cow position: chr23:16690120-16690284 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 26-186
Cow position: chr23:1885237-1885401 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 26-196
Cow position: chr23:22530480-22530655 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 86, 54

Conread position: 26-215
Cow position: chr23:15056708-15056898 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 162, 53

Conread position: 26-231
Cow position: chr23:20194982-20195189 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 103, 71

Conread position: 26-243
Cow position: chr23:7596397-7596613 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 44, 81

Conread position: 26-244
Cow position: chr23:7845227-7845003 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 42, 56

Conread position: 26-245
Cow position: chr23:3247519-3247304 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 174
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 162, 44

Conread position: 26-245
Cow position: chr23:8698376-8698159 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 23

Conread position: 26-245
Cow position: chr23:14191487-14191265 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 101, 53

Conread position: 26-245
Cow position: chr23:21336552-21336776 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 45, 97

Conread position: 26-245
Cow position: chr23:24509636-24509416 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 111, 53

Conread position: 26-245
Cow position: chr23:27403279-27403059 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 94, 135

Conread position: 26-245
Cow position: chr23:37065777-37065553 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 178
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 207

Conread position: 26-246
Cow position: chr23:360981-361199 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 162, 51

Conread position: 26-246
Cow position: chr23:7402636-7402418 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 44

Conread position: 27-179
Cow position: chr23:2501920-2502067 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 27-184
Cow position: chr23:5706927-5706777 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 27-206
Cow position: chr23:2055639-2055454 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 78, 50

Conread position: 27-213
Cow position: chr23:38854803-38854989 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 161, 50

Conread position: 27-219
Cow position: chr23:5617511-5617318 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 51, 0

Conread position: 27-245
Cow position: chr23:6158287-6158493 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 27-245
Cow position: chr23:32961432-32961663 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 44, 0

Conread position: 27-246
Cow position: chr23:40778200-40777975 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 91, 0

Conread position: 30-170
Cow position: chr23:1776699-1776840 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 47

Conread position: 30-206
Cow position: chr23:41348714-41348896 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 87, 0

Conread position: 30-219
Cow position: chr23:8293435-8293240 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 97, 55

Conread position: 30-219
Cow position: chr23:27997066-27996872 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 77, 18

Conread position: 30-222
Cow position: chr23:26949130-26948926 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 30-223
Cow position: chr23:39775659-39775466 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 158, 12

Conread position: 30-233
Cow position: chr23:14739378-14739175 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 47

Conread position: 30-244
Cow position: chr23:28053206-28052991 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 155, 18

Conread position: 30-245
Cow position: chr23:1398104-1398321 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 171

Conread position: 30-246
Cow position: chr23:1883324-1883105 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 66, 47

Conread position: 31-192
Cow position: chr23:7485007-7484848 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 40, 77

Conread position: 31-238
Cow position: chr23:34882947-34883165 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 31-243
Cow position: chr23:24867235-24867017 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 98, 46

Conread position: 31-245
Cow position: chr23:1536255-1536035 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 40, 71

Conread position: 31-246
Cow position: chr23:29471193-29471403 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 10, 67

Conread position: 33-245
Cow position: chr23:1760463-1760254 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 40

Conread position: 34-245
Cow position: chr23:15181084-15180866 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 175

Conread position: 34-246
Cow position: chr23:37992917-37992708 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 44, 80

Conread position: 35-163
Cow position: chr23:29786422-29786555 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 35-194
Cow position: chr23:4523050-4523212 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 80, 0

Conread position: 35-245
Cow position: chr23:41472540-41472328 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 85, 158

Conread position: 41-174
Cow position: chr23:40648806-40648941 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 87, 35

Conread position: 41-223
Cow position: chr23:29742303-29742119 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 79, 32

Conread position: 41-224
Cow position: chr23:13555512-13555694 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 25

Conread position: 41-243
Cow position: chr23:25669164-25669355 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 146, 36

Conread position: 53-212
Cow position: chr23:19979035-19979202 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 79, 0

Conread position: 59-192
Cow position: chr23:10876329-10876198 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 68-213
Cow position: chr23:39302612-39302460 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 72-245
Cow position: chr23:26003953-26003777 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 116, 0

Conread position: 78-245
Cow position: chr23:3168132-3167956 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.