Cow genome map

Conread name: rssp11_a9.y1

Conread position: 1-136
Cow position: chr25:15440825-15440958 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 28

Conread position: 1-191
Cow position: chr25:6255985-6256172 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 78, 9

Conread position: 1-212
Cow position: chr25:16001573-16001779 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 187, 7

Conread position: 1-215
Cow position: chr25:35333110-35332912 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 155, 22

Conread position: 1-222
Cow position: chr25:18075625-18075401 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 74, 20

Conread position: 1-223
Cow position: chr25:20008085-20007871 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 182, 9

Conread position: 1-236
Cow position: chr25:22297067-22297296 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 186, 8

Conread position: 1-241
Cow position: chr25:6424636-6424872 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 126, 20

Conread position: 1-244
Cow position: chr25:9957088-9957324 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 192
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 187, 8

Conread position: 1-245
Cow position: chr25:12204421-12204179 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 20

Conread position: 1-245
Cow position: chr25:18564441-18564204 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 181, 20

Conread position: 1-245
Cow position: chr25:21245652-21245897 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 20

Conread position: 1-245
Cow position: chr25:25754045-25754286 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 105, 8

Conread position: 1-245
Cow position: chr25:26112219-26111991 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 1-245
Cow position: chr25:26654861-26654616 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 190
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 116, 20

Conread position: 1-245
Cow position: chr25:36779448-36779205 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 130, 20

Conread position: 3-245
Cow position: chr25:14791703-14791465 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 127, 18

Conread position: 9-220
Cow position: chr25:26058534-26058319 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 135, 25

Conread position: 14-223
Cow position: chr25:24405793-24406009 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 64

Conread position: 14-246
Cow position: chr25:18491018-18490780 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 98

Conread position: 20-192
Cow position: chr25:21289283-21289105 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 54, 0

Conread position: 22-245
Cow position: chr25:19129787-19129575 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 24-192
Cow position: chr25:24008242-24008412 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 50, 0

Conread position: 24-217
Cow position: chr25:17566520-17566324 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 50, 98

Conread position: 24-244
Cow position: chr25:16064822-16064607 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 164, 81

Conread position: 24-245
Cow position: chr25:17658540-17658324 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 23

Conread position: 24-245
Cow position: chr25:33959321-33959551 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 141

Conread position: 24-246
Cow position: chr25:6464099-6464321 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 80

Conread position: 24-246
Cow position: chr25:18294382-18294606 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 98

Conread position: 24-246
Cow position: chr25:20060094-20060320 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 44, 157

Conread position: 25-219
Cow position: chr25:6886041-6886242 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 25-246
Cow position: chr25:6474165-6474392 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 102, 43

Conread position: 25-246
Cow position: chr25:27622020-27621790 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 45, 149

Conread position: 26-152
Cow position: chr25:12755560-12755686 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 107

Conread position: 26-184
Cow position: chr25:10218117-10218278 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 26-186
Cow position: chr25:36033368-36033207 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 101, 51

Conread position: 26-207
Cow position: chr25:4002731-4002543 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 26-212
Cow position: chr25:7581494-7581685 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 101, 53

Conread position: 26-212
Cow position: chr25:16400332-16400507 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 162, 25

Conread position: 26-219
Cow position: chr25:28188016-28188215 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 154
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 51, 0

Conread position: 26-223
Cow position: chr25:11131511-11131316 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 26-223
Cow position: chr25:20785655-20785852 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 29, 19

Conread position: 26-223
Cow position: chr25:24167971-24168167 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 94, 51

Conread position: 26-224
Cow position: chr25:22203754-22203960 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 94, 0

Conread position: 26-227
Cow position: chr25:14513041-14512843 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 162, 51

Conread position: 26-233
Cow position: chr25:1838168-1837961 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 162, 94

Conread position: 26-237
Cow position: chr25:14224873-14225078 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 162, 16

Conread position: 26-240
Cow position: chr25:8347439-8347223 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 77

Conread position: 26-244
Cow position: chr25:3145775-3145556 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 94, 139

Conread position: 26-244
Cow position: chr25:10365820-10366042 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 100, 186

Conread position: 26-244
Cow position: chr25:21894956-21895177 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 42

Conread position: 26-244
Cow position: chr25:27868733-27868520 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 79, 0

Conread position: 26-244
Cow position: chr25:31732803-31733026 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 72, 44

Conread position: 26-245
Cow position: chr25:1735383-1735601 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 178
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 44

Conread position: 26-245
Cow position: chr25:7216760-7216537 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 13

Conread position: 26-245
Cow position: chr25:8120711-8120486 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 101, 0

Conread position: 26-245
Cow position: chr25:26087451-26087224 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 27-208
Cow position: chr25:36026938-36026753 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 88, 0

Conread position: 27-224
Cow position: chr25:21266939-21266736 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 132, 40

Conread position: 27-244
Cow position: chr25:16921862-16922082 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 98, 21

Conread position: 27-245
Cow position: chr25:12239218-12239428 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 28, 50

Conread position: 27-245
Cow position: chr25:33839309-33839097 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 44, 69

Conread position: 27-246
Cow position: chr25:2046629-2046843 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 160, 78

Conread position: 30-245
Cow position: chr25:12097768-12097552 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 90, 46

Conread position: 30-245
Cow position: chr25:13569244-13569458 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 41, 69

Conread position: 31-192
Cow position: chr25:61586-61423 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 43, 159

Conread position: 31-245
Cow position: chr25:12234834-12235047 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 163, 31

Conread position: 31-245
Cow position: chr25:36762032-36761815 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 14

Conread position: 31-246
Cow position: chr25:35340256-35340043 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 156, 47

Conread position: 33-192
Cow position: chr25:11666578-11666421 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 41, 81

Conread position: 34-221
Cow position: chr25:35612381-35612568 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 143, 43

Conread position: 34-246
Cow position: chr25:2110999-2110791 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 154, 43

Conread position: 35-245
Cow position: chr25:10407492-10407709 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 35-246
Cow position: chr25:448423-448637 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 153, 0

Conread position: 39-215
Cow position: chr25:40407553-40407730 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 31, 91

Conread position: 39-244
Cow position: chr25:17354294-17354089 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 149, 69

Conread position: 41-165
Cow position: chr25:26270018-26270142 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 41-192
Cow position: chr25:20020077-20020222 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 41-245
Cow position: chr25:10138012-10137816 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 147, 36

Conread position: 51-215
Cow position: chr25:24452262-24452429 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 127

Conread position: 55-245
Cow position: chr25:41387616-41387800 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 56-245
Cow position: chr25:11956730-11956536 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 59-245
Cow position: chr25:1096476-1096286 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 66, 0

Conread position: 71-245
Cow position: chr25:18262537-18262716 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 150

Conread position: 86-245
Cow position: chr25:14117980-14117818 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 102, 0

Show alignments to all cow chromosomes.