Cow genome map
| Conread name: | rssp11_a9.y1 |
| Conread position: | 1-158 |
| Cow position: | chr26:22354384-22354231 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 1-187 |
| Cow position: | chr26:9604533-9604350 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 1-194 |
| Cow position: | chr26:5307111-5306913 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 1-213 |
| Cow position: | chr26:10767941-10768140 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 186, 20 |
| Conread position: | 1-218 |
| Cow position: | chr26:3181975-3182194 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 1-219 |
| Cow position: | chr26:8811100-8810886 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 187, 8 |
| Conread position: | 1-242 |
| Cow position: | chr26:30806535-30806781 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 1-243 |
| Cow position: | chr26:11134725-11134966 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 1-245 |
| Cow position: | chr26:11263612-11263365 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 14-244 |
| Cow position: | chr26:21418491-21418724 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 174, 92 |
| Conread position: | 14-245 |
| Cow position: | chr26:26888172-26888405 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 25 |
| Conread position: | 19-233 |
| Cow position: | chr26:34847698-34847483 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 169, 60 |
| Conread position: | 21-246 |
| Cow position: | chr26:7642620-7642850 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 22-245 |
| Cow position: | chr26:6447648-6447879 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 22-246 |
| Cow position: | chr26:31701775-31701542 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 24-171 |
| Cow position: | chr26:24629694-24629550 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 24-184 |
| Cow position: | chr26:23001087-23001253 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 24-197 |
| Cow position: | chr26:19774350-19774527 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 24-206 |
| Cow position: | chr26:1587544-1587371 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 24-211 |
| Cow position: | chr26:30034455-30034643 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 24-237 |
| Cow position: | chr26:31856656-31856445 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 24-245 |
| Cow position: | chr26:13270722-13270950 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 24-245 |
| Cow position: | chr26:25393982-25393760 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 114, 53 |
| Conread position: | 24-246 |
| Cow position: | chr26:6188245-6188023 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 47 |
| Conread position: | 24-246 |
| Cow position: | chr26:27163401-27163168 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 24-246 |
| Cow position: | chr26:29576339-29576117 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 25-233 |
| Cow position: | chr26:20059469-20059264 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 26-154 |
| Cow position: | chr26:34060283-34060155 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 96, 108 |
| Conread position: | 26-157 |
| Cow position: | chr26:27761699-27761830 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-192 |
| Cow position: | chr26:5988777-5988937 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 26-196 |
| Cow position: | chr26:15200564-15200739 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 26-207 |
| Cow position: | chr26:6794100-6793906 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 26-208 |
| Cow position: | chr26:17057632-17057448 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 26-223 |
| Cow position: | chr26:27594581-27594393 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 26-224 |
| Cow position: | chr26:9104330-9104532 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 26-233 |
| Cow position: | chr26:12155168-12155371 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 26-236 |
| Cow position: | chr26:32553629-32553418 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 162, 59 |
| Conread position: | 26-243 |
| Cow position: | chr26:33567096-33567311 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 26-244 |
| Cow position: | chr26:23592174-23591953 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 26-244 |
| Cow position: | chr26:32013577-32013359 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 26-245 |
| Cow position: | chr26:16796281-16796502 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 59 |
| Conread position: | 26-245 |
| Cow position: | chr26:23926037-23926249 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 162, 51 |
| Conread position: | 26-245 |
| Cow position: | chr26:32776558-32776778 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 26-245 |
| Cow position: | chr26:34108712-34108499 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 26-246 |
| Cow position: | chr26:16549934-16549710 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 27-164 |
| Cow position: | chr26:6252800-6252659 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 27-184 |
| Cow position: | chr26:25526195-25526038 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 27-203 |
| Cow position: | chr26:21243050-21242874 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 27-212 |
| Cow position: | chr26:6793891-6793702 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 27-212 |
| Cow position: | chr26:9850151-9850332 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 27-212 |
| Cow position: | chr26:9853661-9853842 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 27-235 |
| Cow position: | chr26:20260528-20260327 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 27-242 |
| Cow position: | chr26:25737422-25737202 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 27-245 |
| Cow position: | chr26:27491553-27491774 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 27-245 |
| Cow position: | chr26:32683067-32682842 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 27-246 |
| Cow position: | chr26:12807567-12807787 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 27-246 |
| Cow position: | chr26:28442058-28442278 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 27-246 |
| Cow position: | chr26:31890042-31889818 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 93, 207 |
| Conread position: | 29-246 |
| Cow position: | chr26:11370876-11370659 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 157, 22 |
| Conread position: | 31-193 |
| Cow position: | chr26:26200788-26200626 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 31-193 |
| Cow position: | chr26:33857248-33857415 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 31-237 |
| Cow position: | chr26:7525524-7525732 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 157, 46 |
| Conread position: | 31-246 |
| Cow position: | chr26:2531236-2531447 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 161, 78 |
| Conread position: | 31-246 |
| Cow position: | chr26:14174247-14174023 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 31-246 |
| Cow position: | chr26:20256786-20256572 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 135, 75 |
| Conread position: | 34-212 |
| Cow position: | chr26:31062142-31061961 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 34-245 |
| Cow position: | chr26:4585265-4585482 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 35-215 |
| Cow position: | chr26:33160560-33160739 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 113, 42 |
| Conread position: | 35-224 |
| Cow position: | chr26:2399079-2399275 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 35-246 |
| Cow position: | chr26:4363244-4363032 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 35-246 |
| Cow position: | chr26:27063729-27063943 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 36-196 |
| Cow position: | chr26:28243678-28243842 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 40-245 |
| Cow position: | chr26:26670811-26671014 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 146, 128 |
| Conread position: | 41-224 |
| Cow position: | chr26:23097243-23097429 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 41-243 |
| Cow position: | chr26:34738210-34738413 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 88, 188 |
| Conread position: | 48-245 |
| Cow position: | chr26:22191420-22191219 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 51-239 |
| Cow position: | chr26:30751938-30752130 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 54-230 |
| Cow position: | chr26:18877931-18877754 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 24, 160 |
Show alignments to all cow chromosomes.