Cow genome map

Conread name: rssp11_a9.y1

Conread position: 1-129
Cow position:
Alignm length: 129
Alignm identity: 103
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 1-177
Cow position:
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 1-197
Cow position:
Alignm length: 203
Alignm identity: 151
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 73, 7

Conread position: 1-197
Cow position:
Alignm length: 201
Alignm identity: 143
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 72, 22

Conread position: 1-197
Cow position:
Alignm length: 200
Alignm identity: 151
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 187, 22

Conread position: 1-202
Cow position:
Alignm length: 205
Alignm identity: 150
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 179, 20

Conread position: 1-205
Cow position:
Alignm length: 208
Alignm identity: 158
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 187, 8

Conread position: 1-227
Cow position:
Alignm length: 240
Alignm identity: 179
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 68, 19

Conread position: 1-233
Cow position:
Alignm length: 240
Alignm identity: 181
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 126, 22

Conread position: 1-237
Cow position:
Alignm length: 246
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 1-237
Cow position:
Alignm length: 242
Alignm identity: 181
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 68, 7

Conread position: 1-245
Cow position:
Alignm length: 249
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 126, 20

Conread position: 1-246
Cow position:
Alignm length: 255
Alignm identity: 185
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 73, 25

Conread position: 1-246
Cow position:
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 22

Conread position: 3-233
Cow position:
Alignm length: 238
Alignm identity: 177
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 123, 83

Conread position: 3-239
Cow position:
Alignm length: 243
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 18

Conread position: 9-211
Cow position:
Alignm length: 211
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 10-245
Cow position:
Alignm length: 240
Alignm identity: 179
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 61, 0

Conread position: 18-245
Cow position:
Alignm length: 233
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 27

Conread position: 19-222
Cow position:
Alignm length: 207
Alignm identity: 157
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 169, 44

Conread position: 19-245
Cow position:
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 19-246
Cow position:
Alignm length: 236
Alignm identity: 181
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 35, 0

Conread position: 21-165
Cow position:
Alignm length: 145
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 21-245
Cow position:
Alignm length: 228
Alignm identity: 173
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 167, 56

Conread position: 22-245
Cow position:
Alignm length: 227
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 41

Conread position: 23-244
Cow position:
Alignm length: 229
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 11

Conread position: 24-192
Cow position:
Alignm length: 171
Alignm identity: 138
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 55, 0

Conread position: 24-193
Cow position:
Alignm length: 170
Alignm identity: 132
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 24-217
Cow position:
Alignm length: 203
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 0

Conread position: 24-221
Cow position:
Alignm length: 210
Alignm identity: 159
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 47, 0

Conread position: 24-244
Cow position:
Alignm length: 224
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 53

Conread position: 24-245
Cow position:
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 24-245
Cow position:
Alignm length: 226
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 24-245
Cow position:
Alignm length: 228
Alignm identity: 157
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 90

Conread position: 24-245
Cow position:
Alignm length: 229
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 24-245
Cow position:
Alignm length: 235
Alignm identity: 168
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 103, 53

Conread position: 24-245
Cow position:
Alignm length: 225
Alignm identity: 165
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 165, 82

Conread position: 24-246
Cow position:
Alignm length: 228
Alignm identity: 169
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 50, 0

Conread position: 24-246
Cow position:
Alignm length: 227
Alignm identity: 173
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 93

Conread position: 24-246
Cow position:
Alignm length: 227
Alignm identity: 172
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 17, 30

Conread position: 25-245
Cow position:
Alignm length: 226
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 149

Conread position: 26-171
Cow position:
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 99, 51

Conread position: 26-184
Cow position:
Alignm length: 161
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 73

Conread position: 26-207
Cow position:
Alignm length: 185
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 161, 51

Conread position: 26-207
Cow position:
Alignm length: 187
Alignm identity: 142
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 45, 96

Conread position: 26-211
Cow position:
Alignm length: 189
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 164, 51

Conread position: 26-213
Cow position:
Alignm length: 195
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 19

Conread position: 26-219
Cow position:
Alignm length: 204
Alignm identity: 157
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 45, 0

Conread position: 26-219
Cow position:
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 162, 0

Conread position: 26-223
Cow position:
Alignm length: 202
Alignm identity: 155
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 43, 84

Conread position: 26-232
Cow position:
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 75

Conread position: 26-235
Cow position:
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 92, 51

Conread position: 26-240
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 81, 55

Conread position: 26-242
Cow position:
Alignm length: 224
Alignm identity: 166
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 94, 46

Conread position: 26-242
Cow position:
Alignm length: 224
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 51

Conread position: 26-245
Cow position:
Alignm length: 223
Alignm identity: 173
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 162, 53

Conread position: 26-245
Cow position:
Alignm length: 223
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 161, 70

Conread position: 26-245
Cow position:
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 153, 94

Conread position: 26-245
Cow position:
Alignm length: 225
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 51

Conread position: 26-245
Cow position:
Alignm length: 233
Alignm identity: 173
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 46, 170

Conread position: 26-245
Cow position:
Alignm length: 222
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 161, 41

Conread position: 26-245
Cow position:
Alignm length: 224
Alignm identity: 173
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 162, 81

Conread position: 26-245
Cow position:
Alignm length: 228
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 26-246
Cow position:
Alignm length: 230
Alignm identity: 168
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 89, 53

Conread position: 27-185
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 27-199
Cow position:
Alignm length: 177
Alignm identity: 131
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 114, 12

Conread position: 27-206
Cow position:
Alignm length: 180
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 27-216
Cow position:
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 79

Conread position: 27-224
Cow position:
Alignm length: 203
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 27-234
Cow position:
Alignm length: 212
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 95, 50

Conread position: 27-237
Cow position:
Alignm length: 218
Alignm identity: 163
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 32, 53

Conread position: 27-245
Cow position:
Alignm length: 228
Alignm identity: 170
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 49, 22

Conread position: 27-245
Cow position:
Alignm length: 224
Alignm identity: 170
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 93, 209

Conread position: 27-246
Cow position:
Alignm length: 230
Alignm identity: 172
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 41, 207

Conread position: 27-246
Cow position:
Alignm length: 224
Alignm identity: 166
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 76, 48

Conread position: 29-246
Cow position:
Alignm length: 225
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 56, 0

Conread position: 30-184
Cow position:
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 52

Conread position: 30-224
Cow position:
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 30-233
Cow position:
Alignm length: 211
Alignm identity: 168
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 43, 53

Conread position: 30-243
Cow position:
Alignm length: 216
Alignm identity: 165
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 92, 47

Conread position: 30-245
Cow position:
Alignm length: 220
Alignm identity: 160
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 45, 77

Conread position: 30-245
Cow position:
Alignm length: 223
Alignm identity: 174
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 88, 35

Conread position: 31-215
Cow position:
Alignm length: 195
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 0

Conread position: 31-221
Cow position:
Alignm length: 195
Alignm identity: 151
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 157, 65

Conread position: 31-223
Cow position:
Alignm length: 205
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 80

Conread position: 31-232
Cow position:
Alignm length: 206
Alignm identity: 145
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 16, 24

Conread position: 31-244
Cow position:
Alignm length: 218
Alignm identity: 163
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 77, 137

Conread position: 31-245
Cow position:
Alignm length: 219
Alignm identity: 159
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 76, 186

Conread position: 31-245
Cow position:
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 91

Conread position: 32-245
Cow position:
Alignm length: 224
Alignm identity: 167
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 88, 37

Conread position: 34-224
Cow position:
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 86, 12

Conread position: 35-219
Cow position:
Alignm length: 192
Alignm identity: 153
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 90, 42

Conread position: 35-245
Cow position:
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 144, 0

Conread position: 35-245
Cow position:
Alignm length: 216
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 123

Conread position: 35-245
Cow position:
Alignm length: 214
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 128, 85

Conread position: 36-246
Cow position:
Alignm length: 214
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 143, 70

Conread position: 40-245
Cow position:
Alignm length: 214
Alignm identity: 161
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 37, 61

Conread position: 40-246
Cow position:
Alignm length: 210
Alignm identity: 156
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 154, 37

Conread position: 41-190
Cow position:
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 86, 135

Conread position: 41-245
Cow position:
Alignm length: 207
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 60

Conread position: 42-246
Cow position:
Alignm length: 208
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 146, 175

Conread position: 46-213
Cow position:
Alignm length: 170
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 142, 60

Conread position: 50-215
Cow position:
Alignm length: 169
Alignm identity: 122
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 138, 29

Conread position: 50-245
Cow position:
Alignm length: 204
Alignm identity: 159
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 5, 28

Conread position: 51-186
Cow position:
Alignm length: 136
Alignm identity: 112
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 51-246
Cow position:
Alignm length: 197
Alignm identity: 150
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 139, 66

Conread position: 52-213
Cow position:
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 16

Conread position: 59-174
Cow position:
Alignm length: 116
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 62-246
Cow position:
Alignm length: 189
Alignm identity: 144
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 0

Conread position: 71-246
Cow position:
Alignm length: 176
Alignm identity: 139
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 15, 0

Conread position: 78-245
Cow position:
Alignm length: 172
Alignm identity: 126
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 65, 70

Show alignments to all cow chromosomes.