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Cow genome map

           
Conread name:
           
rssp11_a9.y1
        

               
Conread position:
               
1-182
               

               
Cow position:
               
chr3:11711891-11711707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr3:57624394-57624219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr3:5044873-5045060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr3:13301918-13302126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr3:73395051-73394843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:42588287-42588070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:57764157-57763943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:63860962-63861181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr3:75158289-75158085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
189, 20
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr3:77365368-77365575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
154, 22
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr3:73764265-73764477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr3:38691477-38691692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:56447-56659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 20
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:5097136-5096913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:58540597-58540820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:6689932-6689691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:61361336-61361114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:35975177-35975413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
184, 8
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr3:48296639-48296402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
191, 8
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:65969091-65968845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:71497214-71497456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 8
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:82461108-82460873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
187, 20
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr3:29813174-29812929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr3:66609913-66610149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 24
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:2506546-2506791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:22872117-22872364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:39328325-39328100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
190, 20
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:49218384-49218619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:53113103-53112856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:55970436-55970195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:59515033-59514802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
187, 19
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:72391015-72390771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr3:79292759-79292523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 20
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:2025115-2024871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:15052022-15052255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
209, 20
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:15954157-15954390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
187, 8
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:46901127-46900882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
135, 20
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:53592764-53593012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:61678624-61678378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:61857433-61857183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:67929331-67929579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr3:29334583-29334751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr3:55971154-55970961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr3:56704616-56704823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
185, 18
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr3:49679059-49678809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr3:43233436-43233244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
8-246
               

               
Cow position:
               
chr3:8147744-8147975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
174, 17
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr3:1133166-1133404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 225
               

               
Conread position:
               
14-218
               

               
Cow position:
               
chr3:23876916-23876713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
174, 95
               

               
Conread position:
               
18-219
               

               
Cow position:
               
chr3:83369234-83369036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
170, 35
               

               
Conread position:
               
18-246
               

               
Cow position:
               
chr3:2674945-2674716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 75
               

               
Conread position:
               
20-244
               

               
Cow position:
               
chr3:14263309-14263084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 212
               

               
Conread position:
               
21-244
               

               
Cow position:
               
chr3:50614551-50614334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
164, 56
               

               
Conread position:
               
22-245
               

               
Cow position:
               
chr3:59271453-59271247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
22-246
               

               
Cow position:
               
chr3:11026834-11026613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
22-246
               

               
Cow position:
               
chr3:30179994-30179771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
166, 79
               

               
Conread position:
               
22-246
               

               
Cow position:
               
chr3:55085264-55085503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
23-213
               

               
Cow position:
               
chr3:18607285-18607088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
24-153
               

               
Cow position:
               
chr3:25944995-25944860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
24-174
               

               
Cow position:
               
chr3:34937754-34937602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
24-181
               

               
Cow position:
               
chr3:30055535-30055691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
24-192
               

               
Cow position:
               
chr3:4087253-4087422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 90
               

               
Conread position:
               
24-203
               

               
Cow position:
               
chr3:51578410-51578591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 53
               

               
Conread position:
               
24-215
               

               
Cow position:
               
chr3:66900826-66901024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 5
               

               
Conread position:
               
24-221
               

               
Cow position:
               
chr3:364301-364507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
24-222
               

               
Cow position:
               
chr3:29596302-29596106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
24-223
               

               
Cow position:
               
chr3:17957376-17957177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr3:18855006-18854802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
24-229
               

               
Cow position:
               
chr3:52863273-52863477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
84, 120
               

               
Conread position:
               
24-238
               

               
Cow position:
               
chr3:11640344-11640129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
24-243
               

               
Cow position:
               
chr3:25690703-25690479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
50, 188
               

               
Conread position:
               
24-243
               

               
Cow position:
               
chr3:33698640-33698411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
24-244
               

               
Cow position:
               
chr3:12323985-12323757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
24-244
               

               
Cow position:
               
chr3:31298242-31298468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 210
               

               
Conread position:
               
24-244
               

               
Cow position:
               
chr3:49461019-49461248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr3:14626246-14626462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
170, 96
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr3:20129856-20129629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr3:31056088-31056314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr3:31419613-31419384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
51, 93
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr3:42423422-42423643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
101, 70
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr3:53384373-53384595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 30
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:4457162-4457389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:8717163-8716934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:31206786-31206559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:49650297-49650067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:54903486-54903260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 183
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:55117054-55117282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
51, 211
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:57754566-57754793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 184
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:79220765-79220536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:79591971-79592201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 218
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr3:79902417-79902190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
25-164
               

               
Cow position:
               
chr3:53836775-53836913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
25-227
               

               
Cow position:
               
chr3:79148359-79148570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
25-233
               

               
Cow position:
               
chr3:48852051-48852266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
25-236
               

               
Cow position:
               
chr3:19198585-19198378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
163, 41
               

               
Conread position:
               
25-242
               

               
Cow position:
               
chr3:59691808-59691595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
163, 52
               

               
Conread position:
               
26-135
               

               
Cow position:
               
chr3:3638096-3637988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
26-174
               

               
Cow position:
               
chr3:4861596-4861451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
26-176
               

               
Cow position:
               
chr3:83201615-83201768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
26-182
               

               
Cow position:
               
chr3:23444984-23445136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
26-182
               

               
Cow position:
               
chr3:55835916-55836075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
26-185
               

               
Cow position:
               
chr3:74878680-74878838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
26-192
               

               
Cow position:
               
chr3:71238065-71237901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
26-199
               

               
Cow position:
               
chr3:73590090-73590264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
162, 44
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr3:54946037-54945851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
26-211
               

               
Cow position:
               
chr3:42367589-42367767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
162, 128
               

               
Conread position:
               
26-212
               

               
Cow position:
               
chr3:13577278-13577459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr3:15158951-15158751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr3:39171574-39171774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr3:78894414-78894604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr3:80581573-80581381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
162, 75
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr3:82359952-82359757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
173, 24
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr3:14601803-14602004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
111, 106
               

               
Conread position:
               
26-229
               

               
Cow position:
               
chr3:84000522-84000319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
162, 183
               

               
Conread position:
               
26-230
               

               
Cow position:
               
chr3:8393260-8393049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
26-233
               

               
Cow position:
               
chr3:62826710-62826923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
101, 51
               

               
Conread position:
               
26-236
               

               
Cow position:
               
chr3:53221923-53221716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
26-239
               

               
Cow position:
               
chr3:71430298-71430517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
94, 194
               

               
Conread position:
               
26-242
               

               
Cow position:
               
chr3:65236934-65236710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
26-244
               

               
Cow position:
               
chr3:67161851-67161621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr3:12712009-12712235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr3:18067044-18066822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
100, 51
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr3:18393479-18393696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
188, 44
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr3:19708195-19708409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
159, 94
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr3:31047042-31047254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr3:51012623-51012845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr3:72019026-72018811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
26-246
               

               
Cow position:
               
chr3:55189848-55190060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
26-246
               

               
Cow position:
               
chr3:72676001-72675774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 51
               

               
Conread position:
               
27-169
               

               
Cow position:
               
chr3:55106529-55106676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
27-176
               

               
Cow position:
               
chr3:39661542-39661690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
27-203
               

               
Cow position:
               
chr3:35283186-35283367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
27-212
               

               
Cow position:
               
chr3:49731733-49731916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
27-216
               

               
Cow position:
               
chr3:5416311-5416514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 87
               

               
Conread position:
               
27-217
               

               
Cow position:
               
chr3:68583094-68583286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr3:3738395-3738200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr3:31309446-31309645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
161, 186
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr3:33252969-33253169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr3:51609729-51609525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr3:65413372-65413566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
27-238
               

               
Cow position:
               
chr3:2216273-2216055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
27-241
               

               
Cow position:
               
chr3:77227230-77227010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
27-242
               

               
Cow position:
               
chr3:27286140-27285916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
27-244
               

               
Cow position:
               
chr3:46350578-46350341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
27-244
               

               
Cow position:
               
chr3:59649163-59648952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
153, 93
               

               
Conread position:
               
27-246
               

               
Cow position:
               
chr3:3164587-3164806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
42, 51
               

               
Conread position:
               
27-246
               

               
Cow position:
               
chr3:23277634-23277855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 78
               

               
Conread position:
               
27-246
               

               
Cow position:
               
chr3:49455146-49454919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
27-246
               

               
Cow position:
               
chr3:68648073-68647847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
29-238
               

               
Cow position:
               
chr3:18763804-18763589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
30-214
               

               
Cow position:
               
chr3:81277794-81277985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 49
               

               
Conread position:
               
30-215
               

               
Cow position:
               
chr3:17895751-17895572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
158, 40
               

               
Conread position:
               
30-223
               

               
Cow position:
               
chr3:44861398-44861598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
30-231
               

               
Cow position:
               
chr3:11020026-11019820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
71, 117
               

               
Conread position:
               
30-244
               

               
Cow position:
               
chr3:31501256-31501042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
90, 49
               

               
Conread position:
               
30-245
               

               
Cow position:
               
chr3:14717715-14717502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
30-245
               

               
Cow position:
               
chr3:36656864-36657082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr3:11987233-11987018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
158, 76
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr3:57577604-57577386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr3:62623744-62623946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
31-191
               

               
Cow position:
               
chr3:48578738-48578586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
31-192
               

               
Cow position:
               
chr3:30009002-30009166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
31-212
               

               
Cow position:
               
chr3:82056205-82056396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
31-213
               

               
Cow position:
               
chr3:49482803-49482984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
31-213
               

               
Cow position:
               
chr3:53046753-53046937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
31-223
               

               
Cow position:
               
chr3:23945003-23944807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
31-229
               

               
Cow position:
               
chr3:5374238-5374041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
31-244
               

               
Cow position:
               
chr3:78201175-78200956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
31-245
               

               
Cow position:
               
chr3:14864947-14864728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 192
               

               
Conread position:
               
31-245
               

               
Cow position:
               
chr3:26904020-26903805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
152, 192
               

               
Conread position:
               
31-245
               

               
Cow position:
               
chr3:26920813-26920583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
62, 163
               

               
Conread position:
               
31-245
               

               
Cow position:
               
chr3:47284743-47284528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
31-245
               

               
Cow position:
               
chr3:79884578-79884798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
31-246
               

               
Cow position:
               
chr3:80053635-80053847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
33-209
               

               
Cow position:
               
chr3:5899723-5899550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
155, 44
               

               
Conread position:
               
33-219
               

               
Cow position:
               
chr3:73443185-73443373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
155, 47
               

               
Conread position:
               
33-236
               

               
Cow position:
               
chr3:62999095-62999304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 176
               

               
Conread position:
               
33-237
               

               
Cow position:
               
chr3:44534858-44535064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 103
               

               
Conread position:
               
34-244
               

               
Cow position:
               
chr3:83490987-83490765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 96
               

               
Conread position:
               
35-212
               

               
Cow position:
               
chr3:42483801-42483621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
35-224
               

               
Cow position:
               
chr3:3985227-3985039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
153, 42
               

               
Conread position:
               
35-245
               

               
Cow position:
               
chr3:24939325-24939535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
155, 203
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr3:7408388-7408170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr3:16157585-16157372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr3:18459621-18459833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
152, 66
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr3:49230917-49230702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 172
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr3:64716924-64716710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr3:77188338-77188136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
36-245
               

               
Cow position:
               
chr3:65020235-65020020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
37-192
               

               
Cow position:
               
chr3:3556449-3556288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 148
               

               
Conread position:
               
37-206
               

               
Cow position:
               
chr3:79208098-79208276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
38-214
               

               
Cow position:
               
chr3:17456367-17456550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
39-205
               

               
Cow position:
               
chr3:45279363-45279185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
39-233
               

               
Cow position:
               
chr3:7678564-7678373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
149, 70
               

               
Conread position:
               
39-243
               

               
Cow position:
               
chr3:59392208-59392412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
39-245
               

               
Cow position:
               
chr3:210213-210010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
149, 62
               

               
Conread position:
               
39-246
               

               
Cow position:
               
chr3:14552774-14552565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 42
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr3:67829799-67829968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
41-240
               

               
Cow position:
               
chr3:58158569-58158771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
41-244
               

               
Cow position:
               
chr3:83921097-83920890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
79, 197
               

               
Conread position:
               
42-245
               

               
Cow position:
               
chr3:17865485-17865283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 78
               

               
Conread position:
               
53-245
               

               
Cow position:
               
chr3:72604237-72604038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
57-245
               

               
Cow position:
               
chr3:80818606-80818424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
61-244
               

               
Cow position:
               
chr3:51033221-51033034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
62-202
               

               
Cow position:
               
chr3:17451057-17451203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
62-245
               

               
Cow position:
               
chr3:2628191-2628006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
124, 17
               

               
Conread position:
               
72-216
               

               
Cow position:
               
chr3:60892496-60892350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 129
               

               
Conread position:
               
86-243
               

               
Cow position:
               
chr3:13350766-13350603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 130
               
Show alignments to all cow chromosomes.