Cow genome map
| Conread name: | rssp11_a9.y1 |
| Conread position: | 1-171 |
| Cow position: | chr5:17644676-17644842 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-177 |
| Cow position: | chr5:50870528-50870349 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 25 |
| Conread position: | 1-192 |
| Cow position: | chr5:57271286-57271472 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 1-196 |
| Cow position: | chr5:35235730-35235923 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 187, 20 |
| Conread position: | 1-200 |
| Cow position: | chr5:8024216-8024410 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 187, 20 |
| Conread position: | 1-209 |
| Cow position: | chr5:56820283-56820487 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 187, 20 |
| Conread position: | 1-215 |
| Cow position: | chr5:17063111-17063327 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 1-216 |
| Cow position: | chr5:28324334-28324111 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 1-218 |
| Cow position: | chr5:65776403-65776622 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 126, 21 |
| Conread position: | 1-219 |
| Cow position: | chr5:56433783-56433564 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 1-224 |
| Cow position: | chr5:32963652-32963871 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 1-227 |
| Cow position: | chr5:2288569-2288806 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 1-233 |
| Cow position: | chr5:30487220-30486997 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-234 |
| Cow position: | chr5:3204816-3204583 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 1-244 |
| Cow position: | chr5:16509075-16508834 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 1-245 |
| Cow position: | chr5:23856183-23856426 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 1-245 |
| Cow position: | chr5:28224433-28224192 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 1-245 |
| Cow position: | chr5:45225845-45226092 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 19 |
| Conread position: | 1-245 |
| Cow position: | chr5:55176869-55176629 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 124, 20 |
| Conread position: | 1-245 |
| Cow position: | chr5:72564741-72564495 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 1-246 |
| Cow position: | chr5:3242497-3242729 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 215, 8 |
| Conread position: | 1-246 |
| Cow position: | chr5:21525150-21524900 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 1-246 |
| Cow position: | chr5:21944376-21944117 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 1-246 |
| Cow position: | chr5:42064182-42063939 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 1-246 |
| Cow position: | chr5:44583149-44583382 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 187, 19 |
| Conread position: | 1-246 |
| Cow position: | chr5:57327776-57327524 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 115, 22 |
| Conread position: | 1-246 |
| Cow position: | chr5:65887027-65887278 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 3-192 |
| Cow position: | chr5:40039793-40039978 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 5-218 |
| Cow position: | chr5:54064758-54064543 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 9-245 |
| Cow position: | chr5:47888735-47888978 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 9-245 |
| Cow position: | chr5:62107516-62107758 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 17-222 |
| Cow position: | chr5:12563039-12563246 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 19-246 |
| Cow position: | chr5:4506989-4507225 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 20-245 |
| Cow position: | chr5:41392701-41392482 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 21-233 |
| Cow position: | chr5:12322838-12323048 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 167, 58 |
| Conread position: | 22-174 |
| Cow position: | chr5:52040353-52040509 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 22-223 |
| Cow position: | chr5:34300878-34300684 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 166, 55 |
| Conread position: | 22-243 |
| Cow position: | chr5:9090058-9090285 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 22-246 |
| Cow position: | chr5:54404929-54405158 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 22-246 |
| Cow position: | chr5:55756463-55756705 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 62, 236 |
| Conread position: | 23-223 |
| Cow position: | chr5:24642765-24642963 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 165, 47 |
| Conread position: | 23-246 |
| Cow position: | chr5:15462676-15462461 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 61, 99 |
| Conread position: | 24-148 |
| Cow position: | chr5:71579135-71579010 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 24-179 |
| Cow position: | chr5:1678355-1678204 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 24-192 |
| Cow position: | chr5:44049661-44049495 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 24-232 |
| Cow position: | chr5:61600379-61600162 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 24-234 |
| Cow position: | chr5:28330373-28330584 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 24-236 |
| Cow position: | chr5:32140749-32140959 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 166, 15 |
| Conread position: | 24-237 |
| Cow position: | chr5:61656565-61656351 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 24-244 |
| Cow position: | chr5:20407707-20407925 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 24-244 |
| Cow position: | chr5:23140615-23140840 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 50, 84 |
| Conread position: | 24-245 |
| Cow position: | chr5:17999532-17999759 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 24-245 |
| Cow position: | chr5:55428522-55428293 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 98, 174 |
| Conread position: | 24-246 |
| Cow position: | chr5:13691608-13691840 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 24-246 |
| Cow position: | chr5:31469622-31469847 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 153 |
| Conread position: | 24-246 |
| Cow position: | chr5:33414449-33414669 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 24-246 |
| Cow position: | chr5:42748117-42747897 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 85, 99 |
| Conread position: | 24-246 |
| Cow position: | chr5:47313436-47313209 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 50, 104 |
| Conread position: | 24-246 |
| Cow position: | chr5:63964206-63964445 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-166 |
| Cow position: | chr5:71723027-71722879 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-213 |
| Cow position: | chr5:64137213-64137020 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 25-246 |
| Cow position: | chr5:61576503-61576275 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 26-185 |
| Cow position: | chr5:56518252-56518410 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 26-192 |
| Cow position: | chr5:29212902-29212741 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-207 |
| Cow position: | chr5:5257335-5257522 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 26-211 |
| Cow position: | chr5:46122392-46122578 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 26-211 |
| Cow position: | chr5:56070814-56070624 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 26-213 |
| Cow position: | chr5:16938049-16938239 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 26-219 |
| Cow position: | chr5:2500226-2500418 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 26-219 |
| Cow position: | chr5:60520120-60519929 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 162, 51 |
| Conread position: | 26-220 |
| Cow position: | chr5:49685312-49685521 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 26-223 |
| Cow position: | chr5:40356907-40357112 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 26-224 |
| Cow position: | chr5:4617325-4617135 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 162, 19 |
| Conread position: | 26-227 |
| Cow position: | chr5:32956138-32956335 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 164, 51 |
| Conread position: | 26-227 |
| Cow position: | chr5:46322852-46323057 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 101, 62 |
| Conread position: | 26-230 |
| Cow position: | chr5:72150205-72150000 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 162, 51 |
| Conread position: | 26-233 |
| Cow position: | chr5:7140150-7140345 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 26-233 |
| Cow position: | chr5:59325877-59326079 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 26-233 |
| Cow position: | chr5:63917452-63917661 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 26-238 |
| Cow position: | chr5:43474805-43474591 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 51 |
| Conread position: | 26-239 |
| Cow position: | chr5:19278742-19278950 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 26-239 |
| Cow position: | chr5:50821740-50821531 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 162, 53 |
| Conread position: | 26-244 |
| Cow position: | chr5:21040015-21040235 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 26-244 |
| Cow position: | chr5:26647680-26647456 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 26-244 |
| Cow position: | chr5:46103982-46104202 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 162, 44 |
| Conread position: | 26-244 |
| Cow position: | chr5:60715400-60715618 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 162, 68 |
| Conread position: | 26-244 |
| Cow position: | chr5:61840150-61839926 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 26-245 |
| Cow position: | chr5:5111117-5111340 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 26-245 |
| Cow position: | chr5:26377711-26377927 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 50 |
| Conread position: | 26-245 |
| Cow position: | chr5:26990350-26990130 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 161, 51 |
| Conread position: | 26-245 |
| Cow position: | chr5:29903560-29903785 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 138 |
| Conread position: | 26-245 |
| Cow position: | chr5:44054077-44054298 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 105, 51 |
| Conread position: | 26-245 |
| Cow position: | chr5:49559127-49558899 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 26-245 |
| Cow position: | chr5:51309930-51309704 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 120, 106 |
| Conread position: | 26-245 |
| Cow position: | chr5:65752815-65752596 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 26-245 |
| Cow position: | chr5:70290439-70290222 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 162, 59 |
| Conread position: | 26-245 |
| Cow position: | chr5:72286954-72287182 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 26-246 |
| Cow position: | chr5:29828007-29827789 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 54 |
| Conread position: | 26-246 |
| Cow position: | chr5:65941292-65941517 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 53 |
| Conread position: | 27-217 |
| Cow position: | chr5:75436930-75437132 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 27-223 |
| Cow position: | chr5:42744745-42744556 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 27-224 |
| Cow position: | chr5:54311292-54311091 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 140 |
| Conread position: | 27-224 |
| Cow position: | chr5:58144644-58144848 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 27-233 |
| Cow position: | chr5:65601420-65601209 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 27-239 |
| Cow position: | chr5:50729457-50729238 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 27-241 |
| Cow position: | chr5:26094205-26094428 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 178 |
| Conread position: | 27-244 |
| Cow position: | chr5:44752354-44752574 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 160, 50 |
| Conread position: | 27-246 |
| Cow position: | chr5:14550624-14550850 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 27-246 |
| Cow position: | chr5:37190138-37190357 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 93, 68 |
| Conread position: | 27-246 |
| Cow position: | chr5:38853323-38853095 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 29-245 |
| Cow position: | chr5:59443293-59443514 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 29-246 |
| Cow position: | chr5:58519444-58519663 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 30-203 |
| Cow position: | chr5:16025503-16025682 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 98, 49 |
| Conread position: | 30-203 |
| Cow position: | chr5:56028573-56028751 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 30-213 |
| Cow position: | chr5:7723626-7723441 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 30-215 |
| Cow position: | chr5:4032038-4032222 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 30-215 |
| Cow position: | chr5:43992276-43992092 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 30-217 |
| Cow position: | chr5:36855159-36854977 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 30-219 |
| Cow position: | chr5:11668231-11668415 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 158, 69 |
| Conread position: | 30-222 |
| Cow position: | chr5:32975597-32975791 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 30-242 |
| Cow position: | chr5:37366855-37366630 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 30-245 |
| Cow position: | chr5:57935155-57935376 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 30-246 |
| Cow position: | chr5:50723003-50722786 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 89, 127 |
| Conread position: | 31-138 |
| Cow position: | chr5:35247157-35247264 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 31-192 |
| Cow position: | chr5:2309603-2309771 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 31-192 |
| Cow position: | chr5:71494773-71494609 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 31-212 |
| Cow position: | chr5:3771801-3771616 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 31-219 |
| Cow position: | chr5:20128009-20127817 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 31-219 |
| Cow position: | chr5:30638905-30639087 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 31-245 |
| Cow position: | chr5:28927636-28927860 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 31-245 |
| Cow position: | chr5:37654240-37654017 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 31-245 |
| Cow position: | chr5:45845739-45845956 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 96, 46 |
| Conread position: | 31-245 |
| Cow position: | chr5:53855651-53855441 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 92 |
| Conread position: | 31-245 |
| Cow position: | chr5:64844167-64844380 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 33-224 |
| Cow position: | chr5:44994087-44994279 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 155, 47 |
| Conread position: | 33-245 |
| Cow position: | chr5:6130304-6130093 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 33-246 |
| Cow position: | chr5:42667435-42667656 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 46, 92 |
| Conread position: | 33-246 |
| Cow position: | chr5:54875728-54875941 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 34-159 |
| Cow position: | chr5:45025967-45026092 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-208 |
| Cow position: | chr5:18090673-18090501 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 153, 96 |
| Conread position: | 35-211 |
| Cow position: | chr5:54530932-54530753 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 35-245 |
| Cow position: | chr5:33792570-33792366 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 41-216 |
| Cow position: | chr5:20779443-20779614 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 38 |
| Conread position: | 41-237 |
| Cow position: | chr5:26370642-26370452 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 41-245 |
| Cow position: | chr5:10261289-10261505 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 41-246 |
| Cow position: | chr5:6503934-6504134 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 34, 157 |
| Conread position: | 45-245 |
| Cow position: | chr5:43923208-43923412 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 86, 54 |
| Conread position: | 46-245 |
| Cow position: | chr5:14629965-14630171 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 47-244 |
| Cow position: | chr5:22072027-22071824 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 48-242 |
| Cow position: | chr5:41981333-41981141 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 92, 58 |
| Conread position: | 51-194 |
| Cow position: | chr5:57737043-57736906 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 51-246 |
| Cow position: | chr5:34528495-34528300 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 54-219 |
| Cow position: | chr5:61455689-61455517 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 54-243 |
| Cow position: | chr5:58998-59187 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 134, 168 |
| Conread position: | 54-245 |
| Cow position: | chr5:55068641-55068458 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 136, 83 |
| Conread position: | 55-186 |
| Cow position: | chr5:9390468-9390334 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 58-246 |
| Cow position: | chr5:53825440-53825260 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 59-219 |
| Cow position: | chr5:14904150-14904304 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 61-245 |
| Cow position: | chr5:60948143-60947955 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 62-244 |
| Cow position: | chr5:23666337-23666524 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 71-219 |
| Cow position: | chr5:50263688-50263836 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-245 |
| Cow position: | chr5:40269816-40269990 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 78-245 |
| Cow position: | chr5:4166569-4166407 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 116, 42 |
| Conread position: | 79-246 |
| Cow position: | chr5:15479019-15478844 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 80-209 |
| Cow position: | chr5:1766439-1766572 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.