Cow genome map
| Conread name: | rssp31_l9.y1 |
| Conread position: | 215-397 |
| Cow position: | chr12:11101413-11101601 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 215-400 |
| Cow position: | chr12:42232475-42232666 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 215-416 |
| Cow position: | chr12:10931250-10931459 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-400 |
| Cow position: | chr12:40306465-40306655 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 216-402 |
| Cow position: | chr12:250152-249962 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 216-402 |
| Cow position: | chr12:8839420-8839612 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 216-402 |
| Cow position: | chr12:18585839-18586031 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-402 |
| Cow position: | chr12:21665302-21665494 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 216-402 |
| Cow position: | chr12:25266167-25265975 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-403 |
| Cow position: | chr12:27994267-27994460 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-406 |
| Cow position: | chr12:9988520-9988325 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 48, 157 |
| Conread position: | 216-406 |
| Cow position: | chr12:21497727-21497534 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 216-406 |
| Cow position: | chr12:29446976-29447169 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 216-414 |
| Cow position: | chr12:7885721-7885510 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 216-414 |
| Cow position: | chr12:15231201-15231403 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 146 |
| Conread position: | 216-416 |
| Cow position: | chr12:62041-61833 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:258896-259104 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:1007182-1007391 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:3717107-3716899 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:5107224-5107432 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:5110894-5110690 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:5713130-5713336 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:7674068-7674276 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:8841889-8841684 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:10075828-10076032 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 127 |
| Conread position: | 216-416 |
| Cow position: | chr12:12754990-12754783 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 174 |
| Conread position: | 216-416 |
| Cow position: | chr12:16302172-16301964 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:19198202-19198407 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 47, 125 |
| Conread position: | 216-416 |
| Cow position: | chr12:21452811-21452603 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:21888876-21888668 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:22748381-22748590 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 103 |
| Conread position: | 216-416 |
| Cow position: | chr12:22979725-22979519 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:23138162-23137954 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:27506483-27506275 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:27958359-27958151 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:30686908-30687116 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:31027653-31027446 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:31829283-31829075 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:32340090-32339882 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 216-416 |
| Cow position: | chr12:33925531-33925323 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:35547962-35547754 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 216-416 |
| Cow position: | chr12:36287846-36287641 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 216-416 |
| Cow position: | chr12:36445553-36445760 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 59, 188 |
| Conread position: | 216-416 |
| Cow position: | chr12:38893530-38893738 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 216-416 |
| Cow position: | chr12:46111951-46111743 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 220-410 |
| Cow position: | chr12:47803343-47803526 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 220-413 |
| Cow position: | chr12:2242817-2242618 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 220-414 |
| Cow position: | chr12:24205705-24205902 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 168 |
| Conread position: | 220-416 |
| Cow position: | chr12:15820902-15821096 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 220-416 |
| Cow position: | chr12:19155689-19155488 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 220-416 |
| Cow position: | chr12:32656719-32656923 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 221-397 |
| Cow position: | chr12:43602085-43601903 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 221-402 |
| Cow position: | chr12:24447697-24447515 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 129 |
| Conread position: | 221-406 |
| Cow position: | chr12:19496203-19496015 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 221-414 |
| Cow position: | chr12:24557751-24557948 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 138 |
| Conread position: | 221-416 |
| Cow position: | chr12:18936000-18936203 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 222-416 |
| Cow position: | chr12:12178064-12177867 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 224-416 |
| Cow position: | chr12:3094440-3094248 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 163 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 229-414 |
| Cow position: | chr12:34176734-34176927 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 232-411 |
| Cow position: | chr12:17981585-17981763 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 281-416 |
| Cow position: | chr12:39283280-39283142 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.