Cow genome map
| Conread name: | rssp31_l9.y1 |
| Conread position: | 213-416 |
| Cow position: | chr13:28131461-28131672 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 215-415 |
| Cow position: | chr13:22084727-22084936 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 48, 131 |
| Conread position: | 215-416 |
| Cow position: | chr13:17485548-17485754 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 215-416 |
| Cow position: | chr13:32080833-32081042 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 216-367 |
| Cow position: | chr13:47577550-47577707 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 216-392 |
| Cow position: | chr13:47301583-47301765 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-396 |
| Cow position: | chr13:30243285-30243471 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-401 |
| Cow position: | chr13:34345262-34345451 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 216-402 |
| Cow position: | chr13:15921499-15921310 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-402 |
| Cow position: | chr13:28699778-28699970 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-402 |
| Cow position: | chr13:53157431-53157239 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-403 |
| Cow position: | chr13:32922352-32922163 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 216-406 |
| Cow position: | chr13:1442357-1442546 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 216-406 |
| Cow position: | chr13:1461574-1461380 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 216-406 |
| Cow position: | chr13:12618081-12618273 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 216-409 |
| Cow position: | chr13:58718514-58718707 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 101 |
| Conread position: | 216-411 |
| Cow position: | chr13:19843428-19843631 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-414 |
| Cow position: | chr13:17318418-17318214 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 216-416 |
| Cow position: | chr13:504292-504500 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:681009-681217 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 216-416 |
| Cow position: | chr13:838449-838241 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:2725849-2725641 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:2805324-2805116 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:3021527-3021319 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:3314585-3314790 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:3657392-3657184 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 58, 102 |
| Conread position: | 216-416 |
| Cow position: | chr13:5498844-5498635 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:6719206-6718998 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:8781866-8782074 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:9537199-9537407 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:13902814-13903022 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 48, 104 |
| Conread position: | 216-416 |
| Cow position: | chr13:15280245-15280453 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:16807555-16807756 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 216-416 |
| Cow position: | chr13:17496041-17496253 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:18097664-18097456 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:18330167-18329959 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:19394164-19393958 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:19566679-19566887 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 216-416 |
| Cow position: | chr13:21134692-21134897 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 216-416 |
| Cow position: | chr13:21837339-21837131 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 216-416 |
| Cow position: | chr13:26204501-26204293 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:30469160-30468952 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:33161899-33162107 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:33333423-33333216 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:34051580-34051785 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 192 |
| Conread position: | 216-416 |
| Cow position: | chr13:34190205-34190409 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 162 |
| Conread position: | 216-416 |
| Cow position: | chr13:35760500-35760708 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:39911363-39911571 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:42087170-42086964 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:43974993-43974786 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 216-416 |
| Cow position: | chr13:44324003-44323799 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 216-416 |
| Cow position: | chr13:45933709-45933917 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:46427679-46427886 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 92 |
| Conread position: | 216-416 |
| Cow position: | chr13:49805984-49805781 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 108 |
| Conread position: | 216-416 |
| Cow position: | chr13:49976628-49976836 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:50190113-50189906 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 216-416 |
| Cow position: | chr13:52860277-52860070 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 142 |
| Conread position: | 216-416 |
| Cow position: | chr13:53051794-53052002 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 216-416 |
| Cow position: | chr13:60466056-60465848 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 217-402 |
| Cow position: | chr13:33522999-33522808 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 217-412 |
| Cow position: | chr13:38013695-38013493 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 217-415 |
| Cow position: | chr13:53575114-53574914 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 132 |
| Conread position: | 217-416 |
| Cow position: | chr13:1591197-1590988 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 217-416 |
| Cow position: | chr13:4663582-4663787 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 218-414 |
| Cow position: | chr13:47357624-47357432 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 220-414 |
| Cow position: | chr13:34298542-34298744 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 220-414 |
| Cow position: | chr13:52085335-52085136 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 220-414 |
| Cow position: | chr13:60646624-60646422 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 220-416 |
| Cow position: | chr13:7609107-7609310 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 220-416 |
| Cow position: | chr13:13332992-13332787 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 220-416 |
| Cow position: | chr13:32734225-32734021 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 98 |
| Conread position: | 221-416 |
| Cow position: | chr13:38897277-38897485 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 224-353 |
| Cow position: | chr13:47006659-47006795 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 227-374 |
| Cow position: | chr13:21108135-21107987 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 86 |
Show alignments to all cow chromosomes.