Cow genome map
| Conread name: | rsto206_k11.y1 |
| Conread position: | 56-293 |
| Cow position: | chr29:26540327-26540566 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 59-275 |
| Cow position: | chr29:19125538-19125314 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 61-306 |
| Cow position: | chr29:25737210-25737452 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 61-313 |
| Cow position: | chr29:9709900-9709648 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 62-299 |
| Cow position: | chr29:10058336-10058567 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 62-318 |
| Cow position: | chr29:43544400-43544656 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 238, 97 |
| Conread position: | 65-298 |
| Cow position: | chr29:4423248-4423471 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 227, 71 |
| Conread position: | 65-302 |
| Cow position: | chr29:40791501-40791275 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 65-309 |
| Cow position: | chr29:29923372-29923614 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 68-299 |
| Cow position: | chr29:20770544-20770315 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 68-306 |
| Cow position: | chr29:4492634-4492396 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 85 |
| Conread position: | 68-306 |
| Cow position: | chr29:41112690-41112919 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 68-309 |
| Cow position: | chr29:36357328-36357088 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 163 |
| Conread position: | 68-310 |
| Cow position: | chr29:41531053-41530802 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 7, 131 |
| Conread position: | 69-257 |
| Cow position: | chr29:40350882-40351065 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 69-302 |
| Cow position: | chr29:21196452-21196685 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 69-307 |
| Cow position: | chr29:40117763-40117533 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 70-280 |
| Cow position: | chr29:36781111-36781317 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 70-282 |
| Cow position: | chr29:501399-501184 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 70-305 |
| Cow position: | chr29:17297337-17297098 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 70-305 |
| Cow position: | chr29:19762462-19762233 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 70-305 |
| Cow position: | chr29:31944065-31943828 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 70-305 |
| Cow position: | chr29:36952113-36952332 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 70-306 |
| Cow position: | chr29:4874691-4874924 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 70-306 |
| Cow position: | chr29:26275800-26275569 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 70-307 |
| Cow position: | chr29:22734909-22735145 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 70-307 |
| Cow position: | chr29:36531065-36530827 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 70-311 |
| Cow position: | chr29:5063342-5063101 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 71-261 |
| Cow position: | chr29:32215902-32215713 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 71-281 |
| Cow position: | chr29:29308384-29308586 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 71-282 |
| Cow position: | chr29:9378833-9378622 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 71-293 |
| Cow position: | chr29:5408944-5409167 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 113 |
| Conread position: | 71-304 |
| Cow position: | chr29:19949503-19949272 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 8, 90 |
| Conread position: | 71-304 |
| Cow position: | chr29:22613619-22613393 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 71-307 |
| Cow position: | chr29:23155433-23155187 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 194 |
| Conread position: | 71-317 |
| Cow position: | chr29:22690425-22690173 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 8, 117 |
| Conread position: | 72-263 |
| Cow position: | chr29:25288724-25288919 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 63, 142 |
| Conread position: | 77-315 |
| Cow position: | chr29:31674821-31674586 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 79-299 |
| Cow position: | chr29:17804718-17804502 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 216, 65 |
| Conread position: | 79-303 |
| Cow position: | chr29:30548961-30548740 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 79-308 |
| Cow position: | chr29:34358791-34359018 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 80-246 |
| Cow position: | chr29:17282248-17282089 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 80-277 |
| Cow position: | chr29:22729752-22729558 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 80-291 |
| Cow position: | chr29:39111137-39111335 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 80-298 |
| Cow position: | chr29:15947356-15947136 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 80-307 |
| Cow position: | chr29:30681516-30681751 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 72, 164 |
| Conread position: | 80-307 |
| Cow position: | chr29:31929173-31928950 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 80-308 |
| Cow position: | chr29:28196833-28197045 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 80-314 |
| Cow position: | chr29:1615114-1614883 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 80-316 |
| Cow position: | chr29:12680345-12680106 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 93 |
| Conread position: | 80-316 |
| Cow position: | chr29:34773562-34773786 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 80-333 |
| Cow position: | chr29:26779063-26778818 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 158, 57 |
| Conread position: | 81-299 |
| Cow position: | chr29:44991239-44991455 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 81-304 |
| Cow position: | chr29:35501479-35501689 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 83-278 |
| Cow position: | chr29:19363892-19363700 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 83-290 |
| Cow position: | chr29:7290953-7290753 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 83-291 |
| Cow position: | chr29:21666270-21666063 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 83-299 |
| Cow position: | chr29:39038085-39038301 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 83-300 |
| Cow position: | chr29:32197878-32197664 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 83-305 |
| Cow position: | chr29:7624349-7624141 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 83-305 |
| Cow position: | chr29:29324236-29324458 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 130 |
| Conread position: | 83-306 |
| Cow position: | chr29:4479983-4480210 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 83-306 |
| Cow position: | chr29:44139061-44139284 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 212, 76 |
| Conread position: | 83-309 |
| Cow position: | chr29:22028777-22028996 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 182, 54 |
| Conread position: | 83-310 |
| Cow position: | chr29:29769170-29769396 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 135, 69 |
| Conread position: | 83-317 |
| Cow position: | chr29:4070804-4070580 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 84-298 |
| Cow position: | chr29:17110136-17109929 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 85-271 |
| Cow position: | chr29:43088488-43088307 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 86-292 |
| Cow position: | chr29:22723777-22723576 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 86-299 |
| Cow position: | chr29:23825031-23825242 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 86-303 |
| Cow position: | chr29:1007999-1007786 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 88-315 |
| Cow position: | chr29:24046177-24045950 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 109 |
| Conread position: | 123-304 |
| Cow position: | chr29:1557073-1556895 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 137-305 |
| Cow position: | chr29:38978659-38978494 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 140-292 |
| Cow position: | chr29:8926334-8926486 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-304 |
| Cow position: | chr29:28840281-28840119 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 140-308 |
| Cow position: | chr29:23243751-23243918 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 143-306 |
| Cow position: | chr29:36217236-36217076 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 184-306 |
| Cow position: | chr29:27329976-27329854 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-303 |
| Cow position: | chr29:40634060-40634177 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 36 |
Show alignments to all cow chromosomes.